FFCP PHASE1:Hg19::chr1:3689307..3689321,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=388588|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=|TSSclassifier=S|UniProt=B2RUZ4|association_with_transcript=-30bp_to_ENST00000444870,NM_001163724,uc001akw.3_5end|description=CAGE_peak_3_at_LOC388588_5end|id=chr1:3689307..3689321,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005177!4.16e-07!107|ontology_enrichment_uberon_v019=UBERON:0005904;6.12e-10;4!UBERON:0006947;5.74e-08;3!UBERON:0004054;5.74e-08;3|ontology_enrichment_uberon_v019_2=UBERON:0005904,1.05e-10,4;UBERON:0006947,1.61e-08,3;UBERON:0004054,1.61e-08,3;UBERON:0004876,5.62e-08,11;UBERON:0000058,1.78e-07,19;UBERON:0000080,4.25e-07,9;UBERON:0002120,4.25e-07,9;UBERON:0004875,4.25e-07,9;UBERON:0005721,4.25e-07,9;UBERON:0005754,4.25e-07,9;UBERON:0007297,4.25e-07,9|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,2.79120467188971,0,1.31883489114227,0.618831764800233,0.331397375727916,0,0,0,0.487932798790507,0.123121058076788,0.408001382488506,0,0,0.410623275218653,0.125542639594803,0.0764134057479513,0,0,0,0,0.309632246632152,0,0.90361775633475,1.10926203050036,0,0,0.293600439334847,0,0.200544447470142,0.217010870715852,0.895661896959697,0,0.515151135268373,0.145398238779565,0,0,0.232429036905685,0,0,0,0,0.47296445977717,0,0,0,0.564727018627814,0.272906150057846,0,0,0,0,0.329851300186716,0,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0,0,0.16072558669708,0.285012743741249,0,0,0,1.09227722252426,0,0,0,0.574752439954483,0.661044872784862,0,0,0,0.764546456250458,1.32171328579026,0,1.58030450865046,0,0.786021525498329,0.205601498999509,0,0.32592226663359,0.473447805734733,0,0.334231370655521,0,0,0.270803863765016,0.128091319725675,0.130059347559878,0.164437904603676,0,0,0.14828656316206,0.535081656179426,0,0,0,1.03088233644789,0.506039384039006,0,1.30216690771284,0.950452044448374,0.301150238155546,0.127986611154418,0,0,0,0.201606743224732,0.267440195783507,0,0,1.34140171940727,0.639312809217652,0,0,0,0,0,0.378139268656271,0.221729397462564,0.614843499851882,1.17881167947941,0.728590576585084,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0.275118041940067,0,0,0,0,0,0,0.976248230192678,0.367663080345869,0.81014194788176,0.0892997282840798,0,0.112611480483322,0,0.949265659568129,0.183201743930407,0,0,0.872188104285069,0.496971951695318,0,0,0,0,0,1.06748995729705,0.24666754841716,0.311211035399766,0.134710672069688,0,0.151357427644931,0,0,0,0,0,0,0,0,0.204154171254893,0.491337269247072,0.103325781175765,0,0,0,0,0.168336113954066,0,0,0,0.612975591598039,0.45071417671979,0,0.179389635688862,0.427114777637135,0.211931901159562,0,0.103052529238439,0,0,0,0.0974370051611986,0,0.276149695926898,0.969876340912871,0,0.10075209822764,0,0,0.545492241181669,0.286804595389004,0.121973706129595,0.265059536642971,0.232387885739037,0.310983165046111,0.504641701751257,0.72995471815166,0,1.28648187638577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,1.47008711385542,2.53510069643662,1.96565443335525,1.18157981336281,0,0.491953754172454,0.343135620597051,0.219500570817251,0,0.100528972411631,0.462942225792648,0,0,0,0.579652024875384,0,0,0,0,0,0,0,0,0.148631162288728,0.93733833986777,0,0.425325291727159,0,0,0.383382679165211,0,1.14462964217194,0.414656231081544,0.432359860250884,0.75745460055828,0.444485260045183,0.381988425558278,2.34434894420094,0,0.102827492703324,1.50171528921959,0.285826432630578,0.224262168690721,0,0,0.258543431515556,0,0,0,0,0.257207374262142,0,1.0656887160644,0.285955987316295,1.62786481617433,0,0,0.355391948742546,0.791951872933429,0.602878754119172,0,0.499864955910285,0,0,0,0,0,0,0,0,0,0,0,0.215627574859517,0.513372145118994,0.254094624222463,0,0,0,1.27587750330633,0.749007023947182,0,0.414415513436035,0.736148950314839,0.500170521059677,0.271265023699736,0.207970861530807,0.356857977594324,0,0.117141414992713,1.50473049863859,9.09630016223939,0,0,0,0,0.391602314925481,0.686286847621712,0.206768026122887,0.431428401637234,0.106727557803444,0.606255142892519,0,0.907170879989041,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0,0.120859449591622,0.802025881213139,0.184161977871793,0,0,0.524497659837696,0.451199612907412,0.539107359730903,1.56869953835371,0,0.211103257785751,0,0,0.215915916102139,1.54227252690289,0.270946437543853,5.01689773854853,0,0,0.671624264166535,5.48149691614836,11.2417243940707,1.02580050046556,1.96808787419823,0,1.13345112812495,0,0,0,0,1.6068392984416,0,0,0.15350367472613,0,0.429680979473094,0,0,0.178064071293475,0.330569830721956,0.384380134730212,0.255225424989168,0.10115778085555,0,0,0,0,0,0,0.18532421910392,0,0,0.316379424718726,0.38126038784765,0,0.855877976067841,0,0,0.179872457583315,0.274537029736055,0.353437207037059,0,0,0.842516912477962,1.95053495635836,0.243713489631284,0,0.136499911407986,0.282810863907425,0,0,0,0,0,1.96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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=388588 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC= | |||
|TSSclassifier=S | |||
|UniProt=B2RUZ4 | |||
|association_with_transcript=-30bp_to_ENST00000444870,NM_001163724,uc001akw.3_5end | |||
|description=CAGE_peak_3_at_LOC388588_5end | |||
|id=chr1:3689307..3689321,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005177!4.16e-07!107 | |||
|ontology_enrichment_uberon_v019=UBERON:0005904;6.12e-10;4!UBERON:0006947;5.74e-08;3!UBERON:0004054;5.74e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005904,1.05e-10,4;UBERON:0006947,1.61e-08,3;UBERON:0004054,1.61e-08,3;UBERON:0004876,5.62e-08,11;UBERON:0000058,1.78e-07,19;UBERON:0000080,4.25e-07,9;UBERON:0002120,4.25e-07,9;UBERON:0004875,4.25e-07,9;UBERON:0005721,4.25e-07,9;UBERON:0005754,4.25e-07,9;UBERON:0007297,4.25e-07,9 | |||
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| |||
|short_description=p3@LOC388588 | |||
}} |
Revision as of 05:32, 12 September 2013
Short description: | p3@LOC388588 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_LOC388588_5end |
Coexpression cluster: | NA |
Association with transcript: | -30bp_to_ENST00000444870, NM_001163724, uc001akw.3_5end |
EntrezGene: | LOC388588 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
duct of male reproductive system | 1.05e-10 | 4 |
male genital duct | 1.61e-08 | 3 |
internal male genitalia | 1.61e-08 | 3 |
urogenital ridge | 5.62e-08 | 11 |
duct | 1.78e-07 | 19 |
mesonephros | 4.25e-07 | 9 |
pronephros | 4.25e-07 | 9 |
nephrogenic cord | 4.25e-07 | 9 |
pronephric mesoderm | 4.25e-07 | 9 |
rostral part of nephrogenic cord | 4.25e-07 | 9 |
presumptive pronephric mesoderm | 4.25e-07 | 9 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.