FFCP PHASE1:Hg19::chr1:247588121..247588150,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=114548|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=16400|TSSclassifier=W|UniProt=Q96P20|association_with_transcript=200bp_to_AF054176_5end|coexpression_cluster_id=C0|description=CAGE_peak_7_at_NLRP3_5end|id=chr1:247588121..247588150,+|ontology_enrichment_celltype=CL:0002057!1.66e-81!42;CL:0000860!1.21e-75!45;CL:0002194!6.38e-68!63;CL:0000576!6.38e-68!63;CL:0000040!6.38e-68!63;CL:0000559!6.38e-68!63;CL:0002009!1.20e-65!65;CL:0000839!1.58e-60!70;CL:0000557!1.38e-59!71;CL:0000766!6.31e-59!76;CL:0000763!2.14e-40!112;CL:0000049!2.14e-40!112;CL:0002087!2.48e-35!119;CL:0000738!3.63e-33!140;CL:0002031!2.67e-31!124;CL:0000037!2.19e-27!172;CL:0000566!2.19e-27!172;CL:0000988!1.81e-25!182;CL:0002032!3.94e-25!165;CL:0000837!3.94e-25!165;CL:0000134!6.99e-11!358;CL:0002320!1.61e-10!365;CL:0000219!3.02e-09!390;CL:0002393!1.25e-08!9;CL:0002397!1.25e-08!9;CL:0000048!1.01e-07!430;CL:0000723!1.66e-07!436;CL:0000034!3.16e-07!444;CL:0000784!3.89e-07!3|ontology_enrichment_celltype_v019=CL:0000860;2.81e-29;33!CL:0002057;2.81e-29;33!CL:0002393;3.52e-25;6!CL:0002397;3.52e-25;6!CL:0000473;5.08e-23;39!CL:0000234;5.08e-23;39!CL:0000576;4.85e-22;48!CL:0000766;7.15e-17;69!CL:0002087;1.37e-11;104!CL:0000763;1.69e-09;100|ontology_enrichment_celltype_v019_2=CL:0000860,1.15e-46,42;CL:0002057,1.15e-46,42;CL:0000473,9.28e-41,48;CL:0000234,9.28e-41,48;CL:0002194,1.75e-32,59;CL:0000576,1.75e-32,59;CL:0000040,1.75e-32,59;CL:0000559,1.75e-32,59;CL:0002009,2.05e-31,61;CL:0000839,5.09e-29,66;CL:0000557,1.39e-28,67;CL:0000766,1.41e-26,72;CL:0000763,1.50e-17,108;CL:0000049,1.50e-17,108;CL:0002393,5.49e-17,9;CL:0002397,5.49e-17,9;CL:0002087,1.92e-16,115;CL:0002031,9.94e-16,120;CL:0000738,8.59e-14,136;CL:0002032,1.59e-11,161;CL:0000837,1.59e-11,161;CL:0000037,5.20e-11,168;CL:0000988,2.09e-10,177|ontology_enrichment_development_v019=CL:0002057;2.88e-30;42!UBERON:0005425;1.22e-17;1!UBERON:0003056;9.64e-07;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!3.54e-52!80;UBERON:0001474!4.35e-48!86;UBERON:0002390!3.90e-45!102;UBERON:0003061!3.90e-45!102;UBERON:0002193!1.73e-40!112;UBERON:0004765!5.74e-40!101;UBERON:0001434!5.74e-40!101;UBERON:0002405!1.21e-36!115;UBERON:0002204!1.86e-21!167;UBERON:0003081!1.60e-17!216;UBERON:0002384!5.01e-10!375;UBERON:0000926!4.48e-07!448;UBERON:0004120!4.48e-07!448;UBERON:0006603!4.48e-07!448|ontology_enrichment_uberon_v019=UBERON:0000941;1.22e-17;1!UBERON:0001785;1.22e-17;1!UBERON:0002464;1.22e-17;1!UBERON:0004904;1.22e-17;1!UBERON:0001021;1.22e-17;1!UBERON:0003714;1.71e-09;2!UBERON:0005162;1.71e-09;2!UBERON:0000122;1.71e-09;2|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.68e-25,76;UBERON:0001474,2.73e-23,82;UBERON:0004765,3.55e-21,90;UBERON:0002405,1.78e-20,93;UBERON:0002390,2.10e-19,98;UBERON:0003061,2.10e-19,98;UBERON:0001434,5.28e-19,100;UBERON:0000941,1.44e-17,1;UBERON:0001785,1.44e-17,1;UBERON:0002464,1.44e-17,1;UBERON:0004904,1.44e-17,1;UBERON:0001021,1.44e-17,1;UBERON:0003902,1.44e-17,1;UBERON:0005425,1.44e-17,1;UBERON:0002193,1.50e-17,108;UBERON:0002204,4.42e-11,167;UBERON:0003714,1.86e-09,2;UBERON:0005162,1.86e-09,2;UBERON:0000122,1.86e-09,2;UBERON:0003081,5.90e-09,203|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,1.10799081706375,2.20598892217156,1.51907609501096,0,0,0.257575567634187,0.145398238779565,0,0,0.464858073811369,0.822335776043652,0.309706370895104,0.28769239232215,0.256160706529101,0,2.06847408441971,3.22742341791913,0,0.752969358170419,0,0.224723484445085,7.34601341690166,1.60464513538047,7.03270838378945,0.329851300186716,0.398927315243264,0.426224750532694,2.61188314765726,0.56738522469114,1.86846674698672,0.75374599577023,0,0,3.02699751316684,0,0.632924774881769,0,0.212604299965044,0,0.112328631146495,0.300353785683013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.476981248610684,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647142602455851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0.223676107892416,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=114548 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=16400 | |||
|TSSclassifier=W | |||
|UniProt=Q96P20 | |||
|association_with_transcript=200bp_to_AF054176_5end | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_7_at_NLRP3_5end | |||
|id=chr1:247588121..247588150,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.66e-81!42;CL:0000860!1.21e-75!45;CL:0002194!6.38e-68!63;CL:0000576!6.38e-68!63;CL:0000040!6.38e-68!63;CL:0000559!6.38e-68!63;CL:0002009!1.20e-65!65;CL:0000839!1.58e-60!70;CL:0000557!1.38e-59!71;CL:0000766!6.31e-59!76;CL:0000763!2.14e-40!112;CL:0000049!2.14e-40!112;CL:0002087!2.48e-35!119;CL:0000738!3.63e-33!140;CL:0002031!2.67e-31!124;CL:0000037!2.19e-27!172;CL:0000566!2.19e-27!172;CL:0000988!1.81e-25!182;CL:0002032!3.94e-25!165;CL:0000837!3.94e-25!165;CL:0000134!6.99e-11!358;CL:0002320!1.61e-10!365;CL:0000219!3.02e-09!390;CL:0002393!1.25e-08!9;CL:0002397!1.25e-08!9;CL:0000048!1.01e-07!430;CL:0000723!1.66e-07!436;CL:0000034!3.16e-07!444;CL:0000784!3.89e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.81e-29;33!CL:0002057;2.81e-29;33!CL:0002393;3.52e-25;6!CL:0002397;3.52e-25;6!CL:0000473;5.08e-23;39!CL:0000234;5.08e-23;39!CL:0000576;4.85e-22;48!CL:0000766;7.15e-17;69!CL:0002087;1.37e-11;104!CL:0000763;1.69e-09;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.15e-46,42;CL:0002057,1.15e-46,42;CL:0000473,9.28e-41,48;CL:0000234,9.28e-41,48;CL:0002194,1.75e-32,59;CL:0000576,1.75e-32,59;CL:0000040,1.75e-32,59;CL:0000559,1.75e-32,59;CL:0002009,2.05e-31,61;CL:0000839,5.09e-29,66;CL:0000557,1.39e-28,67;CL:0000766,1.41e-26,72;CL:0000763,1.50e-17,108;CL:0000049,1.50e-17,108;CL:0002393,5.49e-17,9;CL:0002397,5.49e-17,9;CL:0002087,1.92e-16,115;CL:0002031,9.94e-16,120;CL:0000738,8.59e-14,136;CL:0002032,1.59e-11,161;CL:0000837,1.59e-11,161;CL:0000037,5.20e-11,168;CL:0000988,2.09e-10,177 | |||
|ontology_enrichment_development_v019=CL:0002057;2.88e-30;42!UBERON:0005425;1.22e-17;1!UBERON:0003056;9.64e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!3.54e-52!80;UBERON:0001474!4.35e-48!86;UBERON:0002390!3.90e-45!102;UBERON:0003061!3.90e-45!102;UBERON:0002193!1.73e-40!112;UBERON:0004765!5.74e-40!101;UBERON:0001434!5.74e-40!101;UBERON:0002405!1.21e-36!115;UBERON:0002204!1.86e-21!167;UBERON:0003081!1.60e-17!216;UBERON:0002384!5.01e-10!375;UBERON:0000926!4.48e-07!448;UBERON:0004120!4.48e-07!448;UBERON:0006603!4.48e-07!448 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;1.22e-17;1!UBERON:0001785;1.22e-17;1!UBERON:0002464;1.22e-17;1!UBERON:0004904;1.22e-17;1!UBERON:0001021;1.22e-17;1!UBERON:0003714;1.71e-09;2!UBERON:0005162;1.71e-09;2!UBERON:0000122;1.71e-09;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.68e-25,76;UBERON:0001474,2.73e-23,82;UBERON:0004765,3.55e-21,90;UBERON:0002405,1.78e-20,93;UBERON:0002390,2.10e-19,98;UBERON:0003061,2.10e-19,98;UBERON:0001434,5.28e-19,100;UBERON:0000941,1.44e-17,1;UBERON:0001785,1.44e-17,1;UBERON:0002464,1.44e-17,1;UBERON:0004904,1.44e-17,1;UBERON:0001021,1.44e-17,1;UBERON:0003902,1.44e-17,1;UBERON:0005425,1.44e-17,1;UBERON:0002193,1.50e-17,108;UBERON:0002204,4.42e-11,167;UBERON:0003714,1.86e-09,2;UBERON:0005162,1.86e-09,2;UBERON:0000122,1.86e-09,2;UBERON:0003081,5.90e-09,203 | |||
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|short_description=p7@NLRP3 | |||
}} |
Revision as of 04:47, 12 September 2013
Short description: | p7@NLRP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_NLRP3_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 200bp_to_AF054176_5end |
EntrezGene: | NLRP3 |
HGNC: | 16400 |
UniProt: | Q96P20 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.15e-46 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.15e-46 | 42 |
defensive cell | 9.28e-41 | 48 |
phagocyte | 9.28e-41 | 48 |
monopoietic cell | 1.75e-32 | 59 |
monocyte | 1.75e-32 | 59 |
monoblast | 1.75e-32 | 59 |
promonocyte | 1.75e-32 | 59 |
macrophage dendritic cell progenitor | 2.05e-31 | 61 |
myeloid lineage restricted progenitor cell | 5.09e-29 | 66 |
granulocyte monocyte progenitor cell | 1.39e-28 | 67 |
myeloid leukocyte | 1.41e-26 | 72 |
myeloid cell | 1.50e-17 | 108 |
common myeloid progenitor | 1.50e-17 | 108 |
intermediate monocyte | 5.49e-17 | 9 |
CD14-positive, CD16-positive monocyte | 5.49e-17 | 9 |
nongranular leukocyte | 1.92e-16 | 115 |
hematopoietic lineage restricted progenitor cell | 9.94e-16 | 120 |
leukocyte | 8.59e-14 | 136 |
hematopoietic oligopotent progenitor cell | 1.59e-11 | 161 |
hematopoietic multipotent progenitor cell | 1.59e-11 | 161 |
hematopoietic stem cell | 5.20e-11 | 168 |
hematopoietic cell | 2.09e-10 | 177 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.68e-25 | 76 |
bone element | 2.73e-23 | 82 |
skeletal element | 3.55e-21 | 90 |
immune system | 1.78e-20 | 93 |
hematopoietic system | 2.10e-19 | 98 |
blood island | 2.10e-19 | 98 |
skeletal system | 5.28e-19 | 100 |
cranial nerve II | 1.44e-17 | 1 |
cranial nerve | 1.44e-17 | 1 |
nerve trunk | 1.44e-17 | 1 |
nerve connecting eye with brain | 1.44e-17 | 1 |
nerve | 1.44e-17 | 1 |
retinal neural layer | 1.44e-17 | 1 |
presumptive neural retina | 1.44e-17 | 1 |
hemolymphoid system | 1.50e-17 | 108 |
musculoskeletal system | 4.42e-11 | 167 |
neural tissue | 1.86e-09 | 2 |
multi cell component structure | 1.86e-09 | 2 |
neuron projection bundle | 1.86e-09 | 2 |
lateral plate mesoderm | 5.90e-09 | 203 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.