FFCP PHASE1:Hg19::chr1:162600683..162600706,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4921|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=2731|TSSclassifier=N|UniProt=Q5T245|association_with_transcript=-456bp_to_ENST00000446985_5end|description=CAGE_peak_8_at_DDR2_5end|id=chr1:162600683..162600706,+|ontology_enrichment_celltype=CL:0000055!1.99e-28!180;CL:0000057!4.33e-25!75;CL:0002620!9.36e-14!23;CL:0000680!3.00e-13!57;CL:0000056!3.00e-13!57;CL:0000355!3.00e-13!57;CL:0000048!4.03e-13!430;CL:0000723!2.51e-12!436;CL:0000187!5.01e-12!54;CL:0000034!2.57e-11!444;CL:0000192!5.06e-11!42;CL:0000514!5.06e-11!42;CL:0000183!5.06e-10!59;CL:0000393!1.14e-09!60;CL:0000211!1.14e-09!60;CL:0000359!1.82e-08!32;CL:0002334!5.83e-08!12;CL:0000222!3.66e-07!119;CL:0000136!4.49e-07!15|ontology_enrichment_celltype_v019=CL:0002620;1.14e-19;23!CL:0000134;3.49e-12;55!CL:0000048;8.82e-12;58!CL:0000723;7.47e-10;61!CL:0000569;1.81e-09;4!CL:0002570;2.25e-09;8!CL:0000034;1.11e-07;69!CL:0002320;4.98e-07;188|ontology_enrichment_celltype_v019_2=CL:0002620,8.26e-20,23;CL:0000057,2.91e-17,76;CL:0002320,1.03e-12,361;CL:0000134,1.34e-12,354;CL:0000048,1.99e-12,427;CL:0000723,5.29e-12,433;CL:0000034,1.86e-11,441;CL:0000219,1.19e-10,386;CL:0002570,1.40e-09,8;CL:0000569,1.44e-09,4;CL:0000011,1.44e-09,4|ontology_enrichment_development_v019=CL:0000011;1.81e-09;4|ontology_enrichment_disease=DOID:2394!1.64e-08!14|ontology_enrichment_disease_v019=DOID:17;5.25e-12;5!DOID:450;5.25e-12;5!DOID:66;5.25e-12;5!DOID:423;5.25e-12;5!DOID:0080000;5.25e-12;5!DOID:11722;5.25e-12;5!DOID:2394;3.54e-09;14!DOID:0060084;2.35e-08;3!DOID:127;2.35e-08;3|ontology_enrichment_disease_v019_2=DOID:17,3.93e-12,5;DOID:450,3.93e-12,5;DOID:66,3.93e-12,5;DOID:423,3.93e-12,5;DOID:0080000,3.93e-12,5;DOID:11722,3.93e-12,5;DOID:2394,2.49e-09,14;DOID:0060084,1.66e-08,3;DOID:127,1.66e-08,3|ontology_enrichment_uberon=UBERON:0004290!1.05e-13!70;UBERON:0000914!1.90e-13!83;UBERON:0002329!1.90e-13!83;UBERON:0003077!1.90e-13!83;UBERON:0003059!1.90e-13!83;UBERON:0007282!1.90e-13!83;UBERON:0009618!1.90e-13!83;UBERON:0007285!1.90e-13!83;UBERON:0002385!3.27e-13!63;UBERON:0001015!3.27e-13!63;UBERON:0000383!3.27e-13!63;UBERON:0001134!2.49e-12!61;UBERON:0002036!2.49e-12!61;UBERON:0003082!2.49e-12!61;UBERON:0002199!3.29e-11!45;UBERON:0002416!3.29e-11!45;UBERON:0000486!3.73e-11!82;UBERON:0002097!2.86e-09!40;UBERON:0004872!6.32e-09!84;UBERON:0003102!6.77e-09!95;UBERON:0001637!5.02e-08!42;UBERON:0003509!5.02e-08!42;UBERON:0004572!5.02e-08!42;UBERON:0005256!5.49e-08!143;UBERON:0001981!1.13e-07!60;UBERON:0007500!1.13e-07!60;UBERON:0004537!1.13e-07!60;UBERON:0006965!1.13e-07!60;UBERON:0001135!2.54e-07!15;UBERON:0002384!4.17e-07!375|ontology_enrichment_uberon_v019=UBERON:0002199;3.18e-11;46!UBERON:0002416;3.18e-11;46!UBERON:0002097;1.97e-10;41!UBERON:0001013;5.44e-09;14!UBERON:0003102;3.29e-08;50!UBERON:0002384;3.49e-07;198|ontology_enrichment_uberon_v019_2=UBERON:0002199,5.12e-17,46;UBERON:0002416,5.12e-17,46;UBERON:0002097,3.02e-14,41;UBERON:0002384,2.97e-13,371;UBERON:0001013,5.06e-09,14;UBERON:0003102,4.48e-07,99|phase1_expression=0.908391896352783,0.428201047781966,2.53717927372748,0,0.893922188854576,0,0,6.31719873426831,1.04474251279935,0,0,0,0,0,0,0.672325146451775,0.602694528023977,0.730310090387373,0.487932798790507,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0,0,0,0,0,0,0,0.221533894583621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,1.00267582127178,0.434539556882471,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0.550236083880135,0.417989933073621,0,0,0,0,0,0,0,0,0.17859945656816,0,0.112611480483322,0,0,0,0,0,0,0.993943903390637,0.886413581652058,4.237093786023,1.14734648299525,1.06400514659507,1.12135520028461,0,0.49333509683432,0.933633106199299,0.404132016209064,0.163461903113459,0,0,0.234321431833797,0,0,0.298897361103602,0.352303495931295,0.323745888736263,0.421352420106746,0.816616685019573,0,0.206651562351531,0,0.989067717114227,0,0.718618141816238,0.336672227908132,0.250237039743928,0.831192346452549,0,1.22595118319608,0.300476117813194,0.453728732640084,2.69084453533293,2.13557388818567,2.96704661623387,2.40072876867522,1.33968288009971,0.772921620136887,1.30281799432113,6.58227695740938,1.26668106709558,1.26216887122057,3.77404584433427,2.42469085228218,3.55009592516614,2.21654616100809,1.52604533079439,0,0,0,0,0,0,0,0,0,3.12899064659632,0.643240938192885,0,1.39310378409594,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,1.26755034821831,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0.821860859650752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2933531432838,1.80980402060889,0,0,2.12750493267896,1.04007436911366,0,0,0,0.142977993658148,0,0,1.30294473717494,0,0,2.41151501647669,2.61460037580088,1.89948683245908,0,0,0,0.718874566474748,1.14861935834114,0,2.02693829334611,0.205476322550383,0.179060963239896,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4921 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2731 | |||
|TSSclassifier=N | |||
|UniProt=Q5T245 | |||
|association_with_transcript=-456bp_to_ENST00000446985_5end | |||
|description=CAGE_peak_8_at_DDR2_5end | |||
|id=chr1:162600683..162600706,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.99e-28!180;CL:0000057!4.33e-25!75;CL:0002620!9.36e-14!23;CL:0000680!3.00e-13!57;CL:0000056!3.00e-13!57;CL:0000355!3.00e-13!57;CL:0000048!4.03e-13!430;CL:0000723!2.51e-12!436;CL:0000187!5.01e-12!54;CL:0000034!2.57e-11!444;CL:0000192!5.06e-11!42;CL:0000514!5.06e-11!42;CL:0000183!5.06e-10!59;CL:0000393!1.14e-09!60;CL:0000211!1.14e-09!60;CL:0000359!1.82e-08!32;CL:0002334!5.83e-08!12;CL:0000222!3.66e-07!119;CL:0000136!4.49e-07!15 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.14e-19;23!CL:0000134;3.49e-12;55!CL:0000048;8.82e-12;58!CL:0000723;7.47e-10;61!CL:0000569;1.81e-09;4!CL:0002570;2.25e-09;8!CL:0000034;1.11e-07;69!CL:0002320;4.98e-07;188 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,8.26e-20,23;CL:0000057,2.91e-17,76;CL:0002320,1.03e-12,361;CL:0000134,1.34e-12,354;CL:0000048,1.99e-12,427;CL:0000723,5.29e-12,433;CL:0000034,1.86e-11,441;CL:0000219,1.19e-10,386;CL:0002570,1.40e-09,8;CL:0000569,1.44e-09,4;CL:0000011,1.44e-09,4 | |||
|ontology_enrichment_development_v019=CL:0000011;1.81e-09;4 | |||
|ontology_enrichment_disease=DOID:2394!1.64e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:17;5.25e-12;5!DOID:450;5.25e-12;5!DOID:66;5.25e-12;5!DOID:423;5.25e-12;5!DOID:0080000;5.25e-12;5!DOID:11722;5.25e-12;5!DOID:2394;3.54e-09;14!DOID:0060084;2.35e-08;3!DOID:127;2.35e-08;3 | |||
|ontology_enrichment_disease_v019_2=DOID:17,3.93e-12,5;DOID:450,3.93e-12,5;DOID:66,3.93e-12,5;DOID:423,3.93e-12,5;DOID:0080000,3.93e-12,5;DOID:11722,3.93e-12,5;DOID:2394,2.49e-09,14;DOID:0060084,1.66e-08,3;DOID:127,1.66e-08,3 | |||
|ontology_enrichment_uberon=UBERON:0004290!1.05e-13!70;UBERON:0000914!1.90e-13!83;UBERON:0002329!1.90e-13!83;UBERON:0003077!1.90e-13!83;UBERON:0003059!1.90e-13!83;UBERON:0007282!1.90e-13!83;UBERON:0009618!1.90e-13!83;UBERON:0007285!1.90e-13!83;UBERON:0002385!3.27e-13!63;UBERON:0001015!3.27e-13!63;UBERON:0000383!3.27e-13!63;UBERON:0001134!2.49e-12!61;UBERON:0002036!2.49e-12!61;UBERON:0003082!2.49e-12!61;UBERON:0002199!3.29e-11!45;UBERON:0002416!3.29e-11!45;UBERON:0000486!3.73e-11!82;UBERON:0002097!2.86e-09!40;UBERON:0004872!6.32e-09!84;UBERON:0003102!6.77e-09!95;UBERON:0001637!5.02e-08!42;UBERON:0003509!5.02e-08!42;UBERON:0004572!5.02e-08!42;UBERON:0005256!5.49e-08!143;UBERON:0001981!1.13e-07!60;UBERON:0007500!1.13e-07!60;UBERON:0004537!1.13e-07!60;UBERON:0006965!1.13e-07!60;UBERON:0001135!2.54e-07!15;UBERON:0002384!4.17e-07!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0002199;3.18e-11;46!UBERON:0002416;3.18e-11;46!UBERON:0002097;1.97e-10;41!UBERON:0001013;5.44e-09;14!UBERON:0003102;3.29e-08;50!UBERON:0002384;3.49e-07;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,5.12e-17,46;UBERON:0002416,5.12e-17,46;UBERON:0002097,3.02e-14,41;UBERON:0002384,2.97e-13,371;UBERON:0001013,5.06e-09,14;UBERON:0003102,4.48e-07,99 | |||
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| |||
|short_description=p8@DDR2 | |||
}} |
Revision as of 01:26, 12 September 2013
Short description: | p8@DDR2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_DDR2_5end |
Coexpression cluster: | NA |
Association with transcript: | -456bp_to_ENST00000446985_5end |
EntrezGene: | DDR2 |
HGNC: | 2731 |
UniProt: | Q5T245 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 8.26e-20 | 23 |
fibroblast | 2.91e-17 | 76 |
connective tissue cell | 1.03e-12 | 361 |
mesenchymal cell | 1.34e-12 | 354 |
multi fate stem cell | 1.99e-12 | 427 |
somatic stem cell | 5.29e-12 | 433 |
stem cell | 1.86e-11 | 441 |
motile cell | 1.19e-10 | 386 |
mesenchymal stem cell of adipose | 1.40e-09 | 8 |
cardiac mesenchymal cell | 1.44e-09 | 4 |
migratory trunk neural crest cell | 1.44e-09 | 4 |
Ontology term | p-value | n |
---|---|---|
integument | 5.12e-17 | 46 |
integumental system | 5.12e-17 | 46 |
skin of body | 3.02e-14 | 41 |
connective tissue | 2.97e-13 | 371 |
adipose tissue | 5.06e-09 | 14 |
surface structure | 4.48e-07 | 99 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 3.93e-12 | 5 |
myotonic disease | 3.93e-12 | 5 |
muscle tissue disease | 3.93e-12 | 5 |
myopathy | 3.93e-12 | 5 |
muscular disease | 3.93e-12 | 5 |
myotonic dystrophy | 3.93e-12 | 5 |
ovarian cancer | 2.49e-09 | 14 |
cell type benign neoplasm | 1.66e-08 | 3 |
leiomyoma | 1.66e-08 | 3 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.