FFCP PHASE1:Hg19::chr1:161059325..161059361,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=81607|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=19688|TSSclassifier=S|UniProt=|association_with_transcript=-10bp_to_ENST00000460234_5end|coexpression_cluster_id=C1369|description=CAGE_peak_1_at_PVRL4_5end|id=chr1:161059325..161059361,-|ontology_enrichment_celltype=CL:0002076!2.12e-20!43;CL:0000066!4.16e-19!254;CL:0000223!3.17e-14!59;CL:0002368!7.66e-11!13;CL:0002251!4.57e-10!21;CL:0002202!1.75e-07!9;CL:0002632!1.75e-07!9|ontology_enrichment_celltype_v019=CL:0002076;1.20e-16;42!CL:0002368;1.23e-12;13!CL:0002251;6.57e-10;20!CL:0002202;1.19e-08;9!CL:0002632;1.19e-08;9!CL:1000507;1.24e-07;10!CL:1000494;1.24e-07;10!CL:0000622;8.69e-07;5|ontology_enrichment_celltype_v019_2=CL:0002076,1.51e-22,42;CL:0000066,3.51e-18,253;CL:0000223,3.02e-16,58;CL:0002368,1.09e-12,13;CL:0002251,5.51e-10,20;CL:0002202,1.06e-08,9;CL:0002632,1.06e-08,9;CL:1000507,1.36e-07,10;CL:1000494,1.36e-07,10;CL:0000622,8.52e-07,5|ontology_enrichment_development_v019=CL:0000223;5.64e-09;58|ontology_enrichment_disease=DOID:1749!1.07e-11!14;DOID:305!7.42e-10!106;DOID:299!3.33e-07!25|ontology_enrichment_disease_v019=DOID:1749;6.37e-12;14!DOID:299;9.97e-08;25|ontology_enrichment_disease_v019_2=DOID:1749,5.71e-12,14;DOID:305,1.04e-09,106;DOID:299,9.47e-08,25|ontology_enrichment_uberon=UBERON:0004119!7.77e-24!169;UBERON:0000925!7.77e-24!169;UBERON:0006595!7.77e-24!169;UBERON:0001007!3.05e-17!155;UBERON:0001555!3.05e-17!155;UBERON:0007026!3.05e-17!155;UBERON:0000464!4.91e-17!104;UBERON:0001004!9.26e-17!72;UBERON:0004921!3.64e-15!129;UBERON:0004185!3.64e-15!129;UBERON:0000077!7.18e-15!130;UBERON:0000466!3.57e-14!126;UBERON:0000161!1.18e-12!35;UBERON:0000166!1.33e-11!21;UBERON:0000065!2.17e-10!53;UBERON:0001041!2.22e-10!98;UBERON:0002553!2.40e-09!70;UBERON:0005178!6.01e-09!34;UBERON:0002224!6.01e-09!34;UBERON:0000062!7.37e-09!511;UBERON:0001008!1.00e-08!45;UBERON:0005181!1.58e-08!35;UBERON:0000165!1.60e-08!28;UBERON:0000930!1.60e-08!28;UBERON:0005177!2.46e-08!107;UBERON:0006554!5.05e-08!44;UBERON:0000058!6.28e-08!26;UBERON:0005153!7.41e-08!37;UBERON:0000915!7.55e-08!52;UBERON:0003124!9.69e-08!7;UBERON:0005911!1.05e-07!82;UBERON:0001044!1.39e-07!6;UBERON:0003293!1.39e-07!6;UBERON:0003294!1.39e-07!6;UBERON:0010047!1.39e-07!6;UBERON:0000167!1.39e-07!6;UBERON:0000468!1.59e-07!659;UBERON:0005156!2.43e-07!59;UBERON:0000990!2.43e-07!59;UBERON:0005631!2.78e-07!14;UBERON:0000158!2.78e-07!14;UBERON:0004175!4.24e-07!25;UBERON:0003133!4.54e-07!48;UBERON:0009569!4.98e-07!113;UBERON:0007196!5.33e-07!14;UBERON:0001558!5.33e-07!14;UBERON:0003064!9.60e-07!37|ontology_enrichment_uberon_v019=UBERON:0000161;6.39e-10;19!UBERON:0000166;6.39e-10;19!UBERON:0000165;2.56e-09;28!UBERON:0006554;5.42e-09;30!UBERON:0001008;5.42e-09;30!UBERON:0001041;1.01e-08;14!UBERON:0001044;1.02e-08;6!UBERON:0003293;1.02e-08;6!UBERON:0003294;1.02e-08;6!UBERON:0010047;1.02e-08;6!UBERON:0003408;1.02e-08;6!UBERON:0000167;1.02e-08;6!UBERON:0005178;3.03e-08;34!UBERON:0002224;3.03e-08;34!UBERON:0000974;4.47e-08;6!UBERON:0004211;1.24e-07;10!UBERON:0009773;1.24e-07;10!UBERON:0001231;1.24e-07;10!UBERON:0004810;1.24e-07;10!UBERON:0007196;1.41e-07;15!UBERON:0001558;1.41e-07;15!UBERON:0000365;2.43e-07;5!UBERON:0001004;3.17e-07;65!UBERON:0005181;3.83e-07;35!UBERON:0002294;6.46e-07;7!UBERON:0001173;6.46e-07;7|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.70e-18,160;UBERON:0000925,1.70e-18,160;UBERON:0006595,1.70e-18,160;UBERON:0001004,1.49e-15,74;UBERON:0000161,1.09e-13,36;UBERON:0001007,2.36e-13,145;UBERON:0001555,2.36e-13,145;UBERON:0007026,2.36e-13,145;UBERON:0001008,2.97e-12,48;UBERON:0004921,6.06e-12,118;UBERON:0000166,1.26e-11,22;UBERON:0006554,2.30e-11,47;UBERON:0005177,8.26e-10,101;UBERON:0000065,1.95e-09,54;UBERON:0001041,2.23e-09,87;UBERON:0005178,4.36e-09,34;UBERON:0002224,4.36e-09,34;UBERON:0000165,6.87e-09,29;UBERON:0000930,6.87e-09,29;UBERON:0001044,1.01e-08,6;UBERON:0003293,1.01e-08,6;UBERON:0003294,1.01e-08,6;UBERON:0010047,1.01e-08,6;UBERON:0000167,1.01e-08,6;UBERON:0005181,1.09e-08,35;UBERON:0000915,1.38e-08,52;UBERON:0009569,4.29e-08,112;UBERON:0007196,1.31e-07,15;UBERON:0001558,1.31e-07,15;UBERON:0004810,1.36e-07,10;UBERON:0000365,2.36e-07,5;UBERON:0003102,4.54e-07,99;UBERON:0000153,7.48e-07,62;UBERON:0007811,7.48e-07,62;UBERON:0005911,8.12e-07,82|phase1_expression=0,0,0,0,0,0,0,0,0,2.45733936501509,4.88460817580699,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464448369948228,4.59710612239464,6.32532429434325,8.13458822366933,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.23779651843358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,1.44076983047484,20.4005361443824,24.1009887809879,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.4964204506991,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.696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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=81607 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19688 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-10bp_to_ENST00000460234_5end | |||
|coexpression_cluster_id=C1369 | |||
|description=CAGE_peak_1_at_PVRL4_5end | |||
|id=chr1:161059325..161059361,- | |||
|ontology_enrichment_celltype=CL:0002076!2.12e-20!43;CL:0000066!4.16e-19!254;CL:0000223!3.17e-14!59;CL:0002368!7.66e-11!13;CL:0002251!4.57e-10!21;CL:0002202!1.75e-07!9;CL:0002632!1.75e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.20e-16;42!CL:0002368;1.23e-12;13!CL:0002251;6.57e-10;20!CL:0002202;1.19e-08;9!CL:0002632;1.19e-08;9!CL:1000507;1.24e-07;10!CL:1000494;1.24e-07;10!CL:0000622;8.69e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.51e-22,42;CL:0000066,3.51e-18,253;CL:0000223,3.02e-16,58;CL:0002368,1.09e-12,13;CL:0002251,5.51e-10,20;CL:0002202,1.06e-08,9;CL:0002632,1.06e-08,9;CL:1000507,1.36e-07,10;CL:1000494,1.36e-07,10;CL:0000622,8.52e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000223;5.64e-09;58 | |||
|ontology_enrichment_disease=DOID:1749!1.07e-11!14;DOID:305!7.42e-10!106;DOID:299!3.33e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:1749;6.37e-12;14!DOID:299;9.97e-08;25 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,5.71e-12,14;DOID:305,1.04e-09,106;DOID:299,9.47e-08,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!7.77e-24!169;UBERON:0000925!7.77e-24!169;UBERON:0006595!7.77e-24!169;UBERON:0001007!3.05e-17!155;UBERON:0001555!3.05e-17!155;UBERON:0007026!3.05e-17!155;UBERON:0000464!4.91e-17!104;UBERON:0001004!9.26e-17!72;UBERON:0004921!3.64e-15!129;UBERON:0004185!3.64e-15!129;UBERON:0000077!7.18e-15!130;UBERON:0000466!3.57e-14!126;UBERON:0000161!1.18e-12!35;UBERON:0000166!1.33e-11!21;UBERON:0000065!2.17e-10!53;UBERON:0001041!2.22e-10!98;UBERON:0002553!2.40e-09!70;UBERON:0005178!6.01e-09!34;UBERON:0002224!6.01e-09!34;UBERON:0000062!7.37e-09!511;UBERON:0001008!1.00e-08!45;UBERON:0005181!1.58e-08!35;UBERON:0000165!1.60e-08!28;UBERON:0000930!1.60e-08!28;UBERON:0005177!2.46e-08!107;UBERON:0006554!5.05e-08!44;UBERON:0000058!6.28e-08!26;UBERON:0005153!7.41e-08!37;UBERON:0000915!7.55e-08!52;UBERON:0003124!9.69e-08!7;UBERON:0005911!1.05e-07!82;UBERON:0001044!1.39e-07!6;UBERON:0003293!1.39e-07!6;UBERON:0003294!1.39e-07!6;UBERON:0010047!1.39e-07!6;UBERON:0000167!1.39e-07!6;UBERON:0000468!1.59e-07!659;UBERON:0005156!2.43e-07!59;UBERON:0000990!2.43e-07!59;UBERON:0005631!2.78e-07!14;UBERON:0000158!2.78e-07!14;UBERON:0004175!4.24e-07!25;UBERON:0003133!4.54e-07!48;UBERON:0009569!4.98e-07!113;UBERON:0007196!5.33e-07!14;UBERON:0001558!5.33e-07!14;UBERON:0003064!9.60e-07!37 | |||
|ontology_enrichment_uberon_v019=UBERON:0000161;6.39e-10;19!UBERON:0000166;6.39e-10;19!UBERON:0000165;2.56e-09;28!UBERON:0006554;5.42e-09;30!UBERON:0001008;5.42e-09;30!UBERON:0001041;1.01e-08;14!UBERON:0001044;1.02e-08;6!UBERON:0003293;1.02e-08;6!UBERON:0003294;1.02e-08;6!UBERON:0010047;1.02e-08;6!UBERON:0003408;1.02e-08;6!UBERON:0000167;1.02e-08;6!UBERON:0005178;3.03e-08;34!UBERON:0002224;3.03e-08;34!UBERON:0000974;4.47e-08;6!UBERON:0004211;1.24e-07;10!UBERON:0009773;1.24e-07;10!UBERON:0001231;1.24e-07;10!UBERON:0004810;1.24e-07;10!UBERON:0007196;1.41e-07;15!UBERON:0001558;1.41e-07;15!UBERON:0000365;2.43e-07;5!UBERON:0001004;3.17e-07;65!UBERON:0005181;3.83e-07;35!UBERON:0002294;6.46e-07;7!UBERON:0001173;6.46e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.70e-18,160;UBERON:0000925,1.70e-18,160;UBERON:0006595,1.70e-18,160;UBERON:0001004,1.49e-15,74;UBERON:0000161,1.09e-13,36;UBERON:0001007,2.36e-13,145;UBERON:0001555,2.36e-13,145;UBERON:0007026,2.36e-13,145;UBERON:0001008,2.97e-12,48;UBERON:0004921,6.06e-12,118;UBERON:0000166,1.26e-11,22;UBERON:0006554,2.30e-11,47;UBERON:0005177,8.26e-10,101;UBERON:0000065,1.95e-09,54;UBERON:0001041,2.23e-09,87;UBERON:0005178,4.36e-09,34;UBERON:0002224,4.36e-09,34;UBERON:0000165,6.87e-09,29;UBERON:0000930,6.87e-09,29;UBERON:0001044,1.01e-08,6;UBERON:0003293,1.01e-08,6;UBERON:0003294,1.01e-08,6;UBERON:0010047,1.01e-08,6;UBERON:0000167,1.01e-08,6;UBERON:0005181,1.09e-08,35;UBERON:0000915,1.38e-08,52;UBERON:0009569,4.29e-08,112;UBERON:0007196,1.31e-07,15;UBERON:0001558,1.31e-07,15;UBERON:0004810,1.36e-07,10;UBERON:0000365,2.36e-07,5;UBERON:0003102,4.54e-07,99;UBERON:0000153,7.48e-07,62;UBERON:0007811,7.48e-07,62;UBERON:0005911,8.12e-07,82 | |||
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|short_description=p1@PVRL4 | |||
}} |
Revision as of 01:20, 12 September 2013
Short description: | p1@PVRL4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_PVRL4_5end |
Coexpression cluster: | C1369_amniotic_immature_skin_salivary_chorionic_tongue_esophagus |
Association with transcript: | -10bp_to_ENST00000460234_5end |
EntrezGene: | PVRL4 |
HGNC: | 19688 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.51e-22 | 42 |
epithelial cell | 3.51e-18 | 253 |
endodermal cell | 3.02e-16 | 58 |
respiratory epithelial cell | 1.09e-12 | 13 |
epithelial cell of alimentary canal | 5.51e-10 | 20 |
epithelial cell of tracheobronchial tree | 1.06e-08 | 9 |
epithelial cell of lower respiratory tract | 1.06e-08 | 9 |
kidney tubule cell | 1.36e-07 | 10 |
nephron tubule epithelial cell | 1.36e-07 | 10 |
acinar cell | 8.52e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.70e-18 | 160 |
endoderm | 1.70e-18 | 160 |
presumptive endoderm | 1.70e-18 | 160 |
respiratory system | 1.49e-15 | 74 |
orifice | 1.09e-13 | 36 |
digestive system | 2.36e-13 | 145 |
digestive tract | 2.36e-13 | 145 |
primitive gut | 2.36e-13 | 145 |
renal system | 2.97e-12 | 48 |
subdivision of digestive tract | 6.06e-12 | 118 |
oral opening | 1.26e-11 | 22 |
urinary system structure | 2.30e-11 | 47 |
trunk region element | 8.26e-10 | 101 |
respiratory tract | 1.95e-09 | 54 |
foregut | 2.23e-09 | 87 |
thoracic cavity element | 4.36e-09 | 34 |
thoracic cavity | 4.36e-09 | 34 |
mouth | 6.87e-09 | 29 |
stomodeum | 6.87e-09 | 29 |
saliva-secreting gland | 1.01e-08 | 6 |
gland of oral region | 1.01e-08 | 6 |
gland of foregut | 1.01e-08 | 6 |
oral gland | 1.01e-08 | 6 |
oral cavity | 1.01e-08 | 6 |
thoracic segment organ | 1.09e-08 | 35 |
thoracic segment of trunk | 1.38e-08 | 52 |
subdivision of trunk | 4.29e-08 | 112 |
tracheobronchial tree | 1.31e-07 | 15 |
lower respiratory tract | 1.31e-07 | 15 |
nephron tubule epithelium | 1.36e-07 | 10 |
urothelium | 2.36e-07 | 5 |
surface structure | 4.54e-07 | 99 |
anterior region of body | 7.48e-07 | 62 |
craniocervical region | 7.48e-07 | 62 |
endo-epithelium | 8.12e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 5.71e-12 | 14 |
carcinoma | 1.04e-09 | 106 |
adenocarcinoma | 9.47e-08 | 25 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.