FFCP PHASE1:Hg19::chr19:54461858..54461872,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C2502|description=CAGE_peak_at_chr19:54461858..54461872,+|id=chr19:54461858..54461872,+|ontology_enrichment_celltype=CL:0000047!2.01e-14!8;CL:0000540!1.91e-13!6;CL:0000031!1.91e-13!6;CL:0000404!1.91e-13!6;CL:0002322!5.66e-10!5|ontology_enrichment_celltype_v019=CL:0000047;1.57e-09;2|ontology_enrichment_celltype_v019_2=CL:0000047,2.89e-09,8|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:171!1.12e-07!10|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001893!1.18e-63!34;UBERON:0001869!3.78e-63!32;UBERON:0002791!9.04e-61!33;UBERON:0001017!7.53e-60!82;UBERON:0002020!3.45e-59!34;UBERON:0003528!3.45e-59!34;UBERON:0005743!1.21e-56!86;UBERON:0002780!7.06e-56!41;UBERON:0001890!7.06e-56!41;UBERON:0006240!7.06e-56!41;UBERON:0000073!1.15e-55!94;UBERON:0001016!1.15e-55!94;UBERON:0002619!4.40e-55!22;UBERON:0001950!9.37e-55!20;UBERON:0001049!1.40e-54!57;UBERON:0005068!1.40e-54!57;UBERON:0006241!1.40e-54!57;UBERON:0007135!1.40e-54!57;UBERON:0003080!2.13e-54!42;UBERON:0000956!4.41e-48!25;UBERON:0000203!4.41e-48!25;UBERON:0002346!5.35e-46!90;UBERON:0002616!7.03e-46!59;UBERON:0000955!6.17e-43!69;UBERON:0006238!6.17e-43!69;UBERON:0003075!1.51e-40!86;UBERON:0007284!1.51e-40!86;UBERON:0003056!2.30e-35!61;UBERON:0000924!8.34e-34!173;UBERON:0006601!8.34e-34!173;UBERON:0004121!9.36e-30!169;UBERON:0007023!4.35e-26!115;UBERON:0000033!1.19e-23!123;UBERON:0000153!3.74e-22!129;UBERON:0007811!3.74e-22!129;UBERON:0001871!3.27e-20!7;UBERON:0000200!5.51e-20!6;UBERON:0002420!4.41e-17!9;UBERON:0007245!4.41e-17!9;UBERON:0010009!4.41e-17!9;UBERON:0010011!4.41e-17!9;UBERON:0000454!4.41e-17!9;UBERON:0001872!5.12e-17!5;UBERON:0000369!1.16e-13!4;UBERON:0002435!1.16e-13!4;UBERON:0000204!1.16e-13!4;UBERON:0010082!1.16e-13!4;UBERON:0000025!5.46e-13!194;UBERON:0002308!1.38e-12!9;UBERON:0000125!1.38e-12!9;UBERON:0002021!1.00e-11!5;UBERON:0009663!1.73e-11!7;UBERON:0002771!3.93e-11!3;UBERON:0000349!5.42e-11!5;UBERON:0005383!9.34e-11!3;UBERON:0005382!9.34e-11!3;UBERON:0004111!8.45e-09!241;UBERON:0001873!7.02e-08!2;UBERON:0010122!7.02e-08!2;UBERON:0001870!8.31e-08!2;UBERON:0001876!9.19e-08!2;UBERON:0000064!7.04e-07!219|ontology_enrichment_uberon_v019=UBERON:0001950;6.28e-38;20!UBERON:0002619;1.29e-34;22!UBERON:0002771;1.38e-33;2!UBERON:0000956;1.33e-30;25!UBERON:0000203;1.33e-30;25!UBERON:0002021;2.86e-30;5!UBERON:0001869;1.04e-19;32!UBERON:0003528;1.80e-19;34!UBERON:0002020;1.80e-19;34!UBERON:0002791;8.84e-19;32!UBERON:0001893;3.56e-18;34!UBERON:0001872;2.94e-14;5!UBERON:0000200;6.70e-12;6!UBERON:0002780;6.97e-12;41!UBERON:0001890;6.97e-12;41!UBERON:0001871;2.46e-10;6!UBERON:0000073;3.24e-09;53!UBERON:0002616;3.24e-09;53!UBERON:0001016;2.42e-07;83!UBERON:0001017;2.46e-07;75!UBERON:0002114;9.11e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0001950,7.43e-38,20;UBERON:0002619,1.50e-34,22;UBERON:0002771,2.70e-33,2;UBERON:0000956,1.53e-30,25;UBERON:0000203,1.53e-30,25;UBERON:0002021,3.86e-30,5;UBERON:0002791,5.11e-24,32;UBERON:0001869,5.11e-24,32;UBERON:0003528,1.25e-22,34;UBERON:0002020,1.25e-22,34;UBERON:0001893,1.25e-22,34;UBERON:0002780,8.18e-19,41;UBERON:0001890,8.18e-19,41;UBERON:0003080,8.18e-19,41;UBERON:0006240,8.18e-19,41;UBERON:0001017,2.10e-15,81;UBERON:0000073,1.46e-14,53;UBERON:0002616,1.46e-14,53;UBERON:0001872,2.25e-14,5;UBERON:0001016,7.84e-14,89;UBERON:0001049,8.92e-14,56;UBERON:0005068,8.92e-14,56;UBERON:0006241,8.92e-14,56;UBERON:0007135,8.92e-14,56;UBERON:0003056,1.23e-12,61;UBERON:0000200,8.35e-12,6;UBERON:0002346,1.36e-11,86;UBERON:0000955,3.80e-11,68;UBERON:0006238,3.80e-11,68;UBERON:0001871,2.97e-10,6;UBERON:0003075,2.46e-09,82;UBERON:0007284,2.46e-09,82;UBERON:0004121,1.11e-08,171;UBERON:0000924,1.11e-08,171;UBERON:0006601,1.11e-08,171;UBERON:0010371,2.77e-07,104;UBERON:0002114,8.62e-07,2|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0.662648841607426,0.116193942869518,0.10366105501537,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52456774533478,0,0,0.335032530668698,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C2502 | |||
|description=CAGE_peak_at_chr19:54461858..54461872,+ | |||
|id=chr19:54461858..54461872,+ | |||
|ontology_enrichment_celltype=CL:0000047!2.01e-14!8;CL:0000540!1.91e-13!6;CL:0000031!1.91e-13!6;CL:0000404!1.91e-13!6;CL:0002322!5.66e-10!5 | |||
|ontology_enrichment_celltype_v019=CL:0000047;1.57e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,2.89e-09,8 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:171!1.12e-07!10 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001893!1.18e-63!34;UBERON:0001869!3.78e-63!32;UBERON:0002791!9.04e-61!33;UBERON:0001017!7.53e-60!82;UBERON:0002020!3.45e-59!34;UBERON:0003528!3.45e-59!34;UBERON:0005743!1.21e-56!86;UBERON:0002780!7.06e-56!41;UBERON:0001890!7.06e-56!41;UBERON:0006240!7.06e-56!41;UBERON:0000073!1.15e-55!94;UBERON:0001016!1.15e-55!94;UBERON:0002619!4.40e-55!22;UBERON:0001950!9.37e-55!20;UBERON:0001049!1.40e-54!57;UBERON:0005068!1.40e-54!57;UBERON:0006241!1.40e-54!57;UBERON:0007135!1.40e-54!57;UBERON:0003080!2.13e-54!42;UBERON:0000956!4.41e-48!25;UBERON:0000203!4.41e-48!25;UBERON:0002346!5.35e-46!90;UBERON:0002616!7.03e-46!59;UBERON:0000955!6.17e-43!69;UBERON:0006238!6.17e-43!69;UBERON:0003075!1.51e-40!86;UBERON:0007284!1.51e-40!86;UBERON:0003056!2.30e-35!61;UBERON:0000924!8.34e-34!173;UBERON:0006601!8.34e-34!173;UBERON:0004121!9.36e-30!169;UBERON:0007023!4.35e-26!115;UBERON:0000033!1.19e-23!123;UBERON:0000153!3.74e-22!129;UBERON:0007811!3.74e-22!129;UBERON:0001871!3.27e-20!7;UBERON:0000200!5.51e-20!6;UBERON:0002420!4.41e-17!9;UBERON:0007245!4.41e-17!9;UBERON:0010009!4.41e-17!9;UBERON:0010011!4.41e-17!9;UBERON:0000454!4.41e-17!9;UBERON:0001872!5.12e-17!5;UBERON:0000369!1.16e-13!4;UBERON:0002435!1.16e-13!4;UBERON:0000204!1.16e-13!4;UBERON:0010082!1.16e-13!4;UBERON:0000025!5.46e-13!194;UBERON:0002308!1.38e-12!9;UBERON:0000125!1.38e-12!9;UBERON:0002021!1.00e-11!5;UBERON:0009663!1.73e-11!7;UBERON:0002771!3.93e-11!3;UBERON:0000349!5.42e-11!5;UBERON:0005383!9.34e-11!3;UBERON:0005382!9.34e-11!3;UBERON:0004111!8.45e-09!241;UBERON:0001873!7.02e-08!2;UBERON:0010122!7.02e-08!2;UBERON:0001870!8.31e-08!2;UBERON:0001876!9.19e-08!2;UBERON:0000064!7.04e-07!219 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;6.28e-38;20!UBERON:0002619;1.29e-34;22!UBERON:0002771;1.38e-33;2!UBERON:0000956;1.33e-30;25!UBERON:0000203;1.33e-30;25!UBERON:0002021;2.86e-30;5!UBERON:0001869;1.04e-19;32!UBERON:0003528;1.80e-19;34!UBERON:0002020;1.80e-19;34!UBERON:0002791;8.84e-19;32!UBERON:0001893;3.56e-18;34!UBERON:0001872;2.94e-14;5!UBERON:0000200;6.70e-12;6!UBERON:0002780;6.97e-12;41!UBERON:0001890;6.97e-12;41!UBERON:0001871;2.46e-10;6!UBERON:0000073;3.24e-09;53!UBERON:0002616;3.24e-09;53!UBERON:0001016;2.42e-07;83!UBERON:0001017;2.46e-07;75!UBERON:0002114;9.11e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,7.43e-38,20;UBERON:0002619,1.50e-34,22;UBERON:0002771,2.70e-33,2;UBERON:0000956,1.53e-30,25;UBERON:0000203,1.53e-30,25;UBERON:0002021,3.86e-30,5;UBERON:0002791,5.11e-24,32;UBERON:0001869,5.11e-24,32;UBERON:0003528,1.25e-22,34;UBERON:0002020,1.25e-22,34;UBERON:0001893,1.25e-22,34;UBERON:0002780,8.18e-19,41;UBERON:0001890,8.18e-19,41;UBERON:0003080,8.18e-19,41;UBERON:0006240,8.18e-19,41;UBERON:0001017,2.10e-15,81;UBERON:0000073,1.46e-14,53;UBERON:0002616,1.46e-14,53;UBERON:0001872,2.25e-14,5;UBERON:0001016,7.84e-14,89;UBERON:0001049,8.92e-14,56;UBERON:0005068,8.92e-14,56;UBERON:0006241,8.92e-14,56;UBERON:0007135,8.92e-14,56;UBERON:0003056,1.23e-12,61;UBERON:0000200,8.35e-12,6;UBERON:0002346,1.36e-11,86;UBERON:0000955,3.80e-11,68;UBERON:0006238,3.80e-11,68;UBERON:0001871,2.97e-10,6;UBERON:0003075,2.46e-09,82;UBERON:0007284,2.46e-09,82;UBERON:0004121,1.11e-08,171;UBERON:0000924,1.11e-08,171;UBERON:0006601,1.11e-08,171;UBERON:0010371,2.77e-07,104;UBERON:0002114,8.62e-07,2 | |||
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|short_description=p@chr19:54461858..54461872,+ | |||
}} |
Revision as of 22:16, 11 September 2013
Short description: | p@chr19:54461858..54461872, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:54461858..54461872, + |
Coexpression cluster: | C2502_parietal_small_medial_occipital_temporal_pineal_Neurons |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 2.89e-09 | 8 |
Ontology term | p-value | n |
---|---|---|
neocortex | 7.43e-38 | 20 |
regional part of cerebral cortex | 1.50e-34 | 22 |
middle temporal gyrus | 2.70e-33 | 2 |
cerebral cortex | 1.53e-30 | 25 |
pallium | 1.53e-30 | 25 |
occipital lobe | 3.86e-30 | 5 |
regional part of telencephalon | 5.11e-24 | 32 |
cerebral hemisphere | 5.11e-24 | 32 |
brain grey matter | 1.25e-22 | 34 |
gray matter | 1.25e-22 | 34 |
telencephalon | 1.25e-22 | 34 |
regional part of forebrain | 8.18e-19 | 41 |
forebrain | 8.18e-19 | 41 |
anterior neural tube | 8.18e-19 | 41 |
future forebrain | 8.18e-19 | 41 |
central nervous system | 2.10e-15 | 81 |
regional part of nervous system | 1.46e-14 | 53 |
regional part of brain | 1.46e-14 | 53 |
parietal lobe | 2.25e-14 | 5 |
nervous system | 7.84e-14 | 89 |
neural tube | 8.92e-14 | 56 |
neural rod | 8.92e-14 | 56 |
future spinal cord | 8.92e-14 | 56 |
neural keel | 8.92e-14 | 56 |
pre-chordal neural plate | 1.23e-12 | 61 |
gyrus | 8.35e-12 | 6 |
neurectoderm | 1.36e-11 | 86 |
brain | 3.80e-11 | 68 |
future brain | 3.80e-11 | 68 |
temporal lobe | 2.97e-10 | 6 |
neural plate | 2.46e-09 | 82 |
presumptive neural plate | 2.46e-09 | 82 |
ectoderm-derived structure | 1.11e-08 | 171 |
ectoderm | 1.11e-08 | 171 |
presumptive ectoderm | 1.11e-08 | 171 |
ecto-epithelium | 2.77e-07 | 104 |
duodenum | 8.62e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.