FFCP PHASE1:Hg19::chr19:45254481..45254495,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=602|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=998|TSSclassifier=S|UniProt=|association_with_transcript=-82bp_to_ENST00000444487_5end|coexpression_cluster_id=C107|description=CAGE_peak_13_at_BCL3_5end|id=chr19:45254481..45254495,+|ontology_enrichment_celltype=CL:0002057!2.34e-19!42;CL:0000860!7.27e-19!45;CL:0000766!4.98e-14!76;CL:0002009!2.71e-12!65;CL:0000557!4.57e-12!71;CL:0002194!1.81e-11!63;CL:0000576!1.81e-11!63;CL:0000040!1.81e-11!63;CL:0000559!1.81e-11!63;CL:0000738!2.41e-11!140;CL:0000839!8.02e-11!70;CL:0000763!1.07e-08!112;CL:0000049!1.07e-08!112;CL:0002031!5.53e-08!124;CL:0002087!8.06e-08!119;CL:0002032!5.83e-07!165;CL:0000837!5.83e-07!165;CL:0000037!9.46e-07!172;CL:0000566!9.46e-07!172|ontology_enrichment_celltype_v019=CL:0000860;1.88e-53;33!CL:0002057;1.88e-53;33!CL:0000473;2.63e-37;39!CL:0000234;2.63e-37;39!CL:0000576;1.69e-27;48!CL:0000766;1.90e-17;69!CL:0000775;1.84e-09;3!CL:0000763;6.89e-09;100!CL:0002087;3.85e-08;104!CL:0000738;7.01e-08;136|ontology_enrichment_celltype_v019_2=CL:0000860,1.99e-50,42;CL:0002057,1.99e-50,42;CL:0000473,5.37e-43,48;CL:0000234,5.37e-43,48;CL:0000766,4.83e-36,72;CL:0002194,1.29e-32,59;CL:0000576,1.29e-32,59;CL:0000040,1.29e-32,59;CL:0000559,1.29e-32,59;CL:0002009,2.79e-31,61;CL:0000839,2.82e-30,66;CL:0000557,1.07e-29,67;CL:0000738,1.77e-24,136;CL:0000763,7.34e-24,108;CL:0000049,7.34e-24,108;CL:0002087,5.87e-20,115;CL:0002031,1.10e-18,120;CL:0002032,8.07e-18,161;CL:0000837,8.07e-18,161;CL:0000037,1.17e-17,168;CL:0000988,3.41e-16,177;CL:0000775,1.58e-09,3;CL:0000048,4.32e-07,427;CL:0000723,8.25e-07,433|ontology_enrichment_development_v019=CL:0002057;5.66e-39;42!CL:0000049;2.35e-08;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!1.06e-11!112;UBERON:0002371!2.28e-11!80;UBERON:0002390!2.56e-11!102;UBERON:0003061!2.56e-11!102;UBERON:0002204!9.10e-11!167;UBERON:0002405!1.77e-10!115;UBERON:0001474!4.21e-10!86;UBERON:0004765!1.22e-09!101;UBERON:0001434!1.22e-09!101;UBERON:0003081!1.57e-08!216;UBERON:0000926!5.47e-07!448;UBERON:0004120!5.47e-07!448;UBERON:0006603!5.47e-07!448|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.51e-25,76;UBERON:0001474,1.01e-22,82;UBERON:0002390,4.57e-22,98;UBERON:0003061,4.57e-22,98;UBERON:0004765,2.19e-21,90;UBERON:0001434,8.57e-20,100;UBERON:0002193,3.55e-19,108;UBERON:0002405,4.79e-19,93;UBERON:0002204,7.19e-19,167;UBERON:0003081,1.04e-12,203;UBERON:0000926,1.53e-07,315;UBERON:0004120,1.53e-07,315;UBERON:0006603,1.53e-07,315|phase1_expression=0,0.428201047781966,0.140954404095971,0,0,0,0,0,0.261185628199839,0,0,0.218441372130172,0,0.37129905888014,0.331397375727916,1.34465029290355,1.80808358407193,2.19093027116212,0.487932798790507,0.123121058076788,0.204000691244253,0.626909442956176,0,0.547497700291537,0.251085279189606,0.687720651731561,0.0821005894499457,0.314843125254717,0.393364276848904,0.767658796194425,0.154816123316076,1.83884244895785,0,0.369754010166788,0,0.142169232487422,0,0.553995408531877,5.61524452916397,1.30206522429511,0.223915474239924,0.32389366601898,0,3.48955773070955,2.64513160582167,3.39617685662943,5.57829688573643,2.05583944010913,1.23882548358041,8.05538698502021,5.63553554364021,1.41889337933151,1.03423704220986,5.80936215225443,1.35426486594342,6.96496656307637,3.82068610080984,1.34834090667051,4.28517449319264,0.962787081228281,4.47535988059329,11.8746468067218,4.3882004676759,7.2458207590558,3.48251086354301,5.6738522469114,1.24564449799115,5.7787193009051,3.12889751052121,1.08594422352558,3.02699751316684,1.84138817993782,0.949387162322653,0,0.850417199860174,0,0.44931452458598,0.901061357049038,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0.569212969109448,1.17447437874188,0,0,0,0,0,0.786021525498329,0.411202997999018,0.167186495390678,0,0,0,0.111410456885174,0,0.221533894583621,0,0.384273959177026,0.520237390239513,0.493313713811028,0.552700035571697,0,0,0.535081656179426,0,0,0,0,0.253019692019503,0,0,0,0.150575119077773,0.127986611154418,0,0,0,0,1.33720097891754,0.434473211648397,2.43806866313962,0.670700859703636,0.12786256184353,0.722878304769133,0,0.579386075843295,0,0,0.0945348171640679,0.443458794925128,0.087834785693126,0.0654895377488563,0,0,0,0,0.132957960518865,0.476981248610684,0,0.371457501329565,0.198762407366705,0,0,0.56530794192401,0,0,0.208994966536811,0.258416759169329,0.35576626268671,0,0,0.760272105718513,0.24406205754817,0.367663080345869,1.62028389576352,0.357198913136319,0.22452937262617,0,0,0.949265659568129,0,1.31780417436063,0,0,0,0.506522046658319,0,0,1.41867352879343,0,0,0.74000264525148,0.311211035399766,0.404132016209064,0.326923806226917,0.302714855289863,0,0,0.312160076830321,0,0,0.117434498643765,0,0,0,0.245668634623536,0.103325781175765,0,0.247266929278557,0.910161361938026,0.718618141816238,0,0.375355559615893,0,0.438977620880838,0,0.600952235626387,0,0,0.213557388818567,0.211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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=602 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=998 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-82bp_to_ENST00000444487_5end | |||
|coexpression_cluster_id=C107 | |||
|description=CAGE_peak_13_at_BCL3_5end | |||
|id=chr19:45254481..45254495,+ | |||
|ontology_enrichment_celltype=CL:0002057!2.34e-19!42;CL:0000860!7.27e-19!45;CL:0000766!4.98e-14!76;CL:0002009!2.71e-12!65;CL:0000557!4.57e-12!71;CL:0002194!1.81e-11!63;CL:0000576!1.81e-11!63;CL:0000040!1.81e-11!63;CL:0000559!1.81e-11!63;CL:0000738!2.41e-11!140;CL:0000839!8.02e-11!70;CL:0000763!1.07e-08!112;CL:0000049!1.07e-08!112;CL:0002031!5.53e-08!124;CL:0002087!8.06e-08!119;CL:0002032!5.83e-07!165;CL:0000837!5.83e-07!165;CL:0000037!9.46e-07!172;CL:0000566!9.46e-07!172 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.88e-53;33!CL:0002057;1.88e-53;33!CL:0000473;2.63e-37;39!CL:0000234;2.63e-37;39!CL:0000576;1.69e-27;48!CL:0000766;1.90e-17;69!CL:0000775;1.84e-09;3!CL:0000763;6.89e-09;100!CL:0002087;3.85e-08;104!CL:0000738;7.01e-08;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.99e-50,42;CL:0002057,1.99e-50,42;CL:0000473,5.37e-43,48;CL:0000234,5.37e-43,48;CL:0000766,4.83e-36,72;CL:0002194,1.29e-32,59;CL:0000576,1.29e-32,59;CL:0000040,1.29e-32,59;CL:0000559,1.29e-32,59;CL:0002009,2.79e-31,61;CL:0000839,2.82e-30,66;CL:0000557,1.07e-29,67;CL:0000738,1.77e-24,136;CL:0000763,7.34e-24,108;CL:0000049,7.34e-24,108;CL:0002087,5.87e-20,115;CL:0002031,1.10e-18,120;CL:0002032,8.07e-18,161;CL:0000837,8.07e-18,161;CL:0000037,1.17e-17,168;CL:0000988,3.41e-16,177;CL:0000775,1.58e-09,3;CL:0000048,4.32e-07,427;CL:0000723,8.25e-07,433 | |||
|ontology_enrichment_development_v019=CL:0002057;5.66e-39;42!CL:0000049;2.35e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.06e-11!112;UBERON:0002371!2.28e-11!80;UBERON:0002390!2.56e-11!102;UBERON:0003061!2.56e-11!102;UBERON:0002204!9.10e-11!167;UBERON:0002405!1.77e-10!115;UBERON:0001474!4.21e-10!86;UBERON:0004765!1.22e-09!101;UBERON:0001434!1.22e-09!101;UBERON:0003081!1.57e-08!216;UBERON:0000926!5.47e-07!448;UBERON:0004120!5.47e-07!448;UBERON:0006603!5.47e-07!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.51e-25,76;UBERON:0001474,1.01e-22,82;UBERON:0002390,4.57e-22,98;UBERON:0003061,4.57e-22,98;UBERON:0004765,2.19e-21,90;UBERON:0001434,8.57e-20,100;UBERON:0002193,3.55e-19,108;UBERON:0002405,4.79e-19,93;UBERON:0002204,7.19e-19,167;UBERON:0003081,1.04e-12,203;UBERON:0000926,1.53e-07,315;UBERON:0004120,1.53e-07,315;UBERON:0006603,1.53e-07,315 | |||
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| |||
|short_description=p13@BCL3 | |||
}} |
Revision as of 21:07, 11 September 2013
Short description: | p13@BCL3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_13_at_BCL3_5end |
Coexpression cluster: | C107_Neutrophils_CD14_Eosinophils_Monocytederived_Whole_Peripheral_blood |
Association with transcript: | -82bp_to_ENST00000444487_5end |
EntrezGene: | BCL3 |
HGNC: | 998 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.99e-50 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.99e-50 | 42 |
defensive cell | 5.37e-43 | 48 |
phagocyte | 5.37e-43 | 48 |
myeloid leukocyte | 4.83e-36 | 72 |
monopoietic cell | 1.29e-32 | 59 |
monocyte | 1.29e-32 | 59 |
monoblast | 1.29e-32 | 59 |
promonocyte | 1.29e-32 | 59 |
macrophage dendritic cell progenitor | 2.79e-31 | 61 |
myeloid lineage restricted progenitor cell | 2.82e-30 | 66 |
granulocyte monocyte progenitor cell | 1.07e-29 | 67 |
leukocyte | 1.77e-24 | 136 |
myeloid cell | 7.34e-24 | 108 |
common myeloid progenitor | 7.34e-24 | 108 |
nongranular leukocyte | 5.87e-20 | 115 |
hematopoietic lineage restricted progenitor cell | 1.10e-18 | 120 |
hematopoietic oligopotent progenitor cell | 8.07e-18 | 161 |
hematopoietic multipotent progenitor cell | 8.07e-18 | 161 |
hematopoietic stem cell | 1.17e-17 | 168 |
hematopoietic cell | 3.41e-16 | 177 |
neutrophil | 1.58e-09 | 3 |
multi fate stem cell | 4.32e-07 | 427 |
somatic stem cell | 8.25e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.51e-25 | 76 |
bone element | 1.01e-22 | 82 |
hematopoietic system | 4.57e-22 | 98 |
blood island | 4.57e-22 | 98 |
skeletal element | 2.19e-21 | 90 |
skeletal system | 8.57e-20 | 100 |
hemolymphoid system | 3.55e-19 | 108 |
immune system | 4.79e-19 | 93 |
musculoskeletal system | 7.19e-19 | 167 |
lateral plate mesoderm | 1.04e-12 | 203 |
mesoderm | 1.53e-07 | 315 |
mesoderm-derived structure | 1.53e-07 | 315 |
presumptive mesoderm | 1.53e-07 | 315 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.