FFCP PHASE1:Hg19::chr18:59139537..59139552,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C1801|description=CAGE_peak_at_chr18:59139537..59139552,+|id=chr18:59139537..59139552,+|ontology_enrichment_celltype=CL:0002605!7.42e-33!3;CL:0000047!1.53e-21!8;CL:0002319!9.68e-19!25;CL:0000540!1.46e-16!6;CL:0000031!1.46e-16!6;CL:0000404!1.46e-16!6;CL:0000133!5.07e-16!59;CL:0000128!1.85e-14!7;CL:0000126!1.85e-14!7;CL:0000127!1.85e-14!7;CL:0002453!1.85e-14!7;CL:0000221!3.67e-13!71;CL:0002322!2.17e-09!5|ontology_enrichment_celltype_v019=CL:0002605;7.81e-45;3!CL:0002319;4.52e-20;25!CL:0000128;6.48e-20;7!CL:0000126;6.48e-20;7!CL:0000127;6.48e-20;7!CL:0000047;1.07e-17;2!CL:0000306;1.12e-09;4!CL:0002222;1.12e-09;4!CL:0002224;1.12e-09;4!CL:0000243;8.23e-09;15!CL:0000125;8.23e-09;15!CL:0000095;5.54e-08;17!CL:0002322;7.01e-08;5!CL:0000540;8.97e-07;6!CL:0000404;8.97e-07;6|ontology_enrichment_celltype_v019_2=CL:0002605,7.81e-45,3;CL:0002319,4.75e-20,25;CL:0000128,6.48e-20,7;CL:0000126,6.48e-20,7;CL:0000127,6.48e-20,7;CL:0002453,6.48e-20,7;CL:0000047,2.38e-17,8;CL:0000133,5.87e-14,59;CL:0000221,1.37e-11,72;CL:0000306,1.12e-09,4;CL:0002222,1.12e-09,4;CL:0002224,1.12e-09,4;CL:0000243,8.23e-09,15;CL:0000125,8.23e-09,15;CL:0000030,8.23e-09,15;CL:0000339,8.23e-09,15;CL:0000095,5.54e-08,17;CL:0000123,5.54e-08,17;CL:0002322,6.55e-08,5;CL:0000333,1.14e-07,41;CL:0000540,8.97e-07,6;CL:0000031,8.97e-07,6;CL:0000404,8.97e-07,6|ontology_enrichment_development_v019=CL:0000339;8.23e-09;15!CL:0000133;1.36e-07;59!CL:0000031;8.97e-07;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.35e-13!82;UBERON:0005743!6.63e-13!86;UBERON:0000073!1.47e-11!94;UBERON:0001016!1.47e-11!94;UBERON:0003112!1.47e-11!1;UBERON:0000032!1.47e-11!1;UBERON:0005253!1.47e-11!1;UBERON:0003128!1.47e-11!1;UBERON:0002241!1.47e-11!1;UBERON:0001703!1.47e-11!1;UBERON:0004761!1.47e-11!1;UBERON:0009617!1.47e-11!1;UBERON:0002581!1.81e-11!1;UBERON:0000956!4.31e-10!25;UBERON:0000203!4.31e-10!25;UBERON:0003056!5.54e-10!61;UBERON:0001872!3.44e-09!5;UBERON:0002780!1.17e-08!41;UBERON:0001890!1.17e-08!41;UBERON:0006240!1.17e-08!41;UBERON:0003080!1.90e-08!42;UBERON:0004121!2.03e-08!169;UBERON:0000924!3.50e-08!173;UBERON:0006601!3.50e-08!173;UBERON:0001869!6.37e-08!32;UBERON:0002791!1.10e-07!33;UBERON:0002020!1.84e-07!34;UBERON:0003528!1.84e-07!34;UBERON:0001893!1.84e-07!34;UBERON:0000033!5.37e-07!123;UBERON:0003075!7.69e-07!86;UBERON:0007284!7.69e-07!86|ontology_enrichment_uberon_v019=UBERON:0010077;1.12e-09;4!UBERON:0005389;1.12e-09;4!UBERON:0000484;1.12e-09;4!UBERON:0000965;1.12e-09;4!UBERON:0001803;1.12e-09;4|ontology_enrichment_uberon_v019_2=UBERON:0010077,1.12e-09,4;UBERON:0005389,1.12e-09,4;UBERON:0000484,1.12e-09,4;UBERON:0002546,1.12e-09,4;UBERON:0000965,1.12e-09,4;UBERON:0001803,1.12e-09,4;UBERON:0003073,1.12e-09,4;UBERON:0005426,1.12e-09,4;UBERON:0001017,6.74e-07,81|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.57612388417951,0.684372125364421,5.14724822338691,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378139268656271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348581828608555,1.65857688024593,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.88326753830522,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01637849688985,0,0.773288812777695,1.17261385734044,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546974809018219,0,0,0,0,0.535701835878287,0,0,0,0,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C1801 | |||
|description=CAGE_peak_at_chr18:59139537..59139552,+ | |||
|id=chr18:59139537..59139552,+ | |||
|ontology_enrichment_celltype=CL:0002605!7.42e-33!3;CL:0000047!1.53e-21!8;CL:0002319!9.68e-19!25;CL:0000540!1.46e-16!6;CL:0000031!1.46e-16!6;CL:0000404!1.46e-16!6;CL:0000133!5.07e-16!59;CL:0000128!1.85e-14!7;CL:0000126!1.85e-14!7;CL:0000127!1.85e-14!7;CL:0002453!1.85e-14!7;CL:0000221!3.67e-13!71;CL:0002322!2.17e-09!5 | |||
|ontology_enrichment_celltype_v019=CL:0002605;7.81e-45;3!CL:0002319;4.52e-20;25!CL:0000128;6.48e-20;7!CL:0000126;6.48e-20;7!CL:0000127;6.48e-20;7!CL:0000047;1.07e-17;2!CL:0000306;1.12e-09;4!CL:0002222;1.12e-09;4!CL:0002224;1.12e-09;4!CL:0000243;8.23e-09;15!CL:0000125;8.23e-09;15!CL:0000095;5.54e-08;17!CL:0002322;7.01e-08;5!CL:0000540;8.97e-07;6!CL:0000404;8.97e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,7.81e-45,3;CL:0002319,4.75e-20,25;CL:0000128,6.48e-20,7;CL:0000126,6.48e-20,7;CL:0000127,6.48e-20,7;CL:0002453,6.48e-20,7;CL:0000047,2.38e-17,8;CL:0000133,5.87e-14,59;CL:0000221,1.37e-11,72;CL:0000306,1.12e-09,4;CL:0002222,1.12e-09,4;CL:0002224,1.12e-09,4;CL:0000243,8.23e-09,15;CL:0000125,8.23e-09,15;CL:0000030,8.23e-09,15;CL:0000339,8.23e-09,15;CL:0000095,5.54e-08,17;CL:0000123,5.54e-08,17;CL:0002322,6.55e-08,5;CL:0000333,1.14e-07,41;CL:0000540,8.97e-07,6;CL:0000031,8.97e-07,6;CL:0000404,8.97e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000339;8.23e-09;15!CL:0000133;1.36e-07;59!CL:0000031;8.97e-07;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.35e-13!82;UBERON:0005743!6.63e-13!86;UBERON:0000073!1.47e-11!94;UBERON:0001016!1.47e-11!94;UBERON:0003112!1.47e-11!1;UBERON:0000032!1.47e-11!1;UBERON:0005253!1.47e-11!1;UBERON:0003128!1.47e-11!1;UBERON:0002241!1.47e-11!1;UBERON:0001703!1.47e-11!1;UBERON:0004761!1.47e-11!1;UBERON:0009617!1.47e-11!1;UBERON:0002581!1.81e-11!1;UBERON:0000956!4.31e-10!25;UBERON:0000203!4.31e-10!25;UBERON:0003056!5.54e-10!61;UBERON:0001872!3.44e-09!5;UBERON:0002780!1.17e-08!41;UBERON:0001890!1.17e-08!41;UBERON:0006240!1.17e-08!41;UBERON:0003080!1.90e-08!42;UBERON:0004121!2.03e-08!169;UBERON:0000924!3.50e-08!173;UBERON:0006601!3.50e-08!173;UBERON:0001869!6.37e-08!32;UBERON:0002791!1.10e-07!33;UBERON:0002020!1.84e-07!34;UBERON:0003528!1.84e-07!34;UBERON:0001893!1.84e-07!34;UBERON:0000033!5.37e-07!123;UBERON:0003075!7.69e-07!86;UBERON:0007284!7.69e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0010077;1.12e-09;4!UBERON:0005389;1.12e-09;4!UBERON:0000484;1.12e-09;4!UBERON:0000965;1.12e-09;4!UBERON:0001803;1.12e-09;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010077,1.12e-09,4;UBERON:0005389,1.12e-09,4;UBERON:0000484,1.12e-09,4;UBERON:0002546,1.12e-09,4;UBERON:0000965,1.12e-09,4;UBERON:0001803,1.12e-09,4;UBERON:0003073,1.12e-09,4;UBERON:0005426,1.12e-09,4;UBERON:0001017,6.74e-07,81 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.57612388417951,0.684372125364421,5.14724822338691,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378139268656271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348581828608555,1.65857688024593,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.88326753830522,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01637849688985,0,0.773288812777695,1.17261385734044,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546974809018219,0,0,0,0,0.535701835878287,0,0,0,0,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436350690340377,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr18:59139537..59139552,+ | |||
}} |
Revision as of 17:56, 11 September 2013
Short description: | p@chr18:59139537..59139552, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr18:59139537..59139552, + |
Coexpression cluster: | C1801_Lens_Astrocyte_Neural_Neurons_H9_eye_parietal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 7.81e-45 | 3 |
neural cell | 4.75e-20 | 25 |
oligodendrocyte | 6.48e-20 | 7 |
macroglial cell | 6.48e-20 | 7 |
astrocyte | 6.48e-20 | 7 |
oligodendrocyte precursor cell | 6.48e-20 | 7 |
neuronal stem cell | 2.38e-17 | 8 |
neurectodermal cell | 5.87e-14 | 59 |
ectodermal cell | 1.37e-11 | 72 |
crystallin accumulating cell | 1.12e-09 | 4 |
vertebrate lens cell | 1.12e-09 | 4 |
lens epithelial cell | 1.12e-09 | 4 |
glial cell (sensu Vertebrata) | 8.23e-09 | 15 |
glial cell | 8.23e-09 | 15 |
glioblast | 8.23e-09 | 15 |
glioblast (sensu Vertebrata) | 8.23e-09 | 15 |
neuron associated cell | 5.54e-08 | 17 |
neuron associated cell (sensu Vertebrata) | 5.54e-08 | 17 |
embryonic stem cell | 6.55e-08 | 5 |
migratory neural crest cell | 1.14e-07 | 41 |
neuron | 8.97e-07 | 6 |
neuroblast | 8.97e-07 | 6 |
electrically signaling cell | 8.97e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
cuboidal epithelium | 1.12e-09 | 4 |
transparent eye structure | 1.12e-09 | 4 |
simple cuboidal epithelium | 1.12e-09 | 4 |
cranial placode | 1.12e-09 | 4 |
lens of camera-type eye | 1.12e-09 | 4 |
epithelium of lens | 1.12e-09 | 4 |
lens placode | 1.12e-09 | 4 |
lens vesicle | 1.12e-09 | 4 |
central nervous system | 6.74e-07 | 81 |
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