FFCP PHASE1:Hg19::chr17:48277500..48277511,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1277|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=2197|TSSclassifier=S|UniProt=|association_with_transcript=40bp_to_ENST00000507689_5end|description=CAGE_peak_56_at_COL1A1_5end|id=chr17:48277500..48277511,-|ontology_enrichment_celltype=CL:0000055!2.60e-22!180;CL:0000183!3.29e-08!59;CL:0000057!8.52e-08!75;CL:0000680!1.45e-07!57;CL:0000056!1.45e-07!57;CL:0000355!1.45e-07!57;CL:0000393!2.60e-07!60;CL:0000211!2.60e-07!60;CL:0000187!2.89e-07!54|ontology_enrichment_celltype_v019=CL:0002603;4.22e-10;3!CL:0002575;4.82e-08;2!CL:0000349;8.27e-08;19!CL:0002195;1.46e-07;2!CL:0002571;1.46e-07;2!CL:0000128;1.86e-07;7!CL:0000126;1.86e-07;7!CL:0000127;1.86e-07;7|ontology_enrichment_celltype_v019_2=CL:0002603,3.51e-10,3;CL:0002575,4.45e-08,2;CL:0000349,9.98e-08,19;CL:0000128,1.52e-07,7;CL:0000126,1.52e-07,7;CL:0000127,1.52e-07,7;CL:0002453,1.52e-07,7;CL:0002195,1.90e-07,2;CL:0002571,1.90e-07,2|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002200!1.98e-09!11;UBERON:0006876!1.98e-09!11;UBERON:0001134!5.93e-08!61;UBERON:0002036!5.93e-08!61;UBERON:0003082!5.93e-08!61;UBERON:0002385!2.22e-07!63;UBERON:0001015!2.22e-07!63;UBERON:0000383!2.22e-07!63|ontology_enrichment_uberon_v019=UBERON:0003104;5.53e-08;7!UBERON:0009142;5.53e-08;7|ontology_enrichment_uberon_v019_2=|phase1_expression=0.908391896352783,0.428201047781966,2.11431606143957,0,0.446961094427288,0,0,0,0,0,0,0.218441372130172,2.11013582582763,0.123766352960047,0.331397375727916,0,0,0,0.487932798790507,1.35433163884467,1.42800483870977,4.07491137921514,0,0.136874425072884,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,1.34140171940727,0.767175371061182,0.361439152384566,2.50668955317945,1.15877215168659,0.795285947051099,1.94653948121054,0.567208902984407,1.10864698731282,0.702678285545008,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49091585508596,0.886413581652058,0.662045904066094,0.573673241497627,0.354668382198357,0,0,1.72667283892012,0.933633106199299,0.269421344139376,0,0.908144565869588,4.60940739583999,0.70296429550139,0,0,0,0,0,0,0,0.122834317311768,0.206651562351531,3.56400857184616,1.7308685049499,0,0.718618141816238,0,0,0,0,0.30648779579902,2.70428506031874,0.907457465280168,0,0.85422955527427,1.27159140695737,0,0,0.257640540045629,0.37223371266318,0.168776332241266,0,0.252433774244115,0.460249493211497,0.161646056818812,0,0.201504196455281,0,0,0,0,0,0,0,0,0,0,0,0.643240938192885,0,0.464367928031979,0,0.236613600079688,0.168584690078102,0,0.110293972732394,0,0.237270619111097,0.404493924480493,0.588664395376038,0.38474715694639,0,1.40241773803446,2.057870056657,0,0,0,0,0,0.122988438543114,0.343135620597051,0.109750285408626,0,0,0.0925884451585296,0.977424915930974,0,0,0.115930404975077,2.58299127318808,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224262168690721,0.87192013766656,0.2933531432838,0.646358578788889,0,0,0.531876233169741,1.04007436911366,0,0,0,2.14466990487221,4.88359444852299,0,0.325736184293735,2.13235169245527,0,0.904318131178758,1.74306691720059,0.199945982364114,0,0,0,4.31324739884849,14.9320516584348,0,0.289562613335158,0.205476322550383,0,0,0,0,0,0.254094624222463,0,0.773288812777695,0.167516265334349,0,0,0,0,0.49076596687656,0,0,0.831883446123229,0.892144943985809,0.315404830067869,0,2.70851489754947,6.82222512167955,0,0.664225598535437,0.737476674166813,0.0868836144680828,4.30762546418029,3.77457766191941,0,0,0,0.606255142892519,3.32870879020994,3.62868351995616,0.992431231275107,1.2276957863045,0.841980283299221,1.53766979106841,0.511707249066704,1.12597744800525,0,0,0.177561725313127,0.0821271560138091,0,0,0,0,0,1.03333003348146,0.364182336013434,0.131124414959424,0,0,0,1.46139224653261,0,0,0,0,0,0.541892875087706,0,0,0,0,0,0,0,0,0.325378394664303,0.103041011647722,0.27470839445503,0.082509499920588,0,0,0,0.580024309752732,0.154048617114644,0.15350367472613,0,0.322260734604821,0,0,3.38321735457602,0,0,0,0.2023155617111,0.464845549297286,0.31481234683064,0,0.308033580176089,0.532306030317022,0,0.18532421910392,0.572499546967965,2.60510858551767,1.2655176988749,0.762520775695299,0.255897791311334,1.28381696410176,0,0,0.179872457583315,0.54907405947211,0.942499218765491,0.606547444719948,0,0.421258456238981,0.48763373908959,0,0,0.136499911407986,0.424216295861138,0,1.10273068709225,0,0,0,0,0.811641507850816,0,0.281695602532241,0,0.982490410131212,0.7133421029625,0,0.211107635297664,0,0.75894634753143,0.699869440489966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,2.658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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1277 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2197 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=40bp_to_ENST00000507689_5end | |||
|description=CAGE_peak_56_at_COL1A1_5end | |||
|id=chr17:48277500..48277511,- | |||
|ontology_enrichment_celltype=CL:0000055!2.60e-22!180;CL:0000183!3.29e-08!59;CL:0000057!8.52e-08!75;CL:0000680!1.45e-07!57;CL:0000056!1.45e-07!57;CL:0000355!1.45e-07!57;CL:0000393!2.60e-07!60;CL:0000211!2.60e-07!60;CL:0000187!2.89e-07!54 | |||
|ontology_enrichment_celltype_v019=CL:0002603;4.22e-10;3!CL:0002575;4.82e-08;2!CL:0000349;8.27e-08;19!CL:0002195;1.46e-07;2!CL:0002571;1.46e-07;2!CL:0000128;1.86e-07;7!CL:0000126;1.86e-07;7!CL:0000127;1.86e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002603,3.51e-10,3;CL:0002575,4.45e-08,2;CL:0000349,9.98e-08,19;CL:0000128,1.52e-07,7;CL:0000126,1.52e-07,7;CL:0000127,1.52e-07,7;CL:0002453,1.52e-07,7;CL:0002195,1.90e-07,2;CL:0002571,1.90e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002200!1.98e-09!11;UBERON:0006876!1.98e-09!11;UBERON:0001134!5.93e-08!61;UBERON:0002036!5.93e-08!61;UBERON:0003082!5.93e-08!61;UBERON:0002385!2.22e-07!63;UBERON:0001015!2.22e-07!63;UBERON:0000383!2.22e-07!63 | |||
|ontology_enrichment_uberon_v019=UBERON:0003104;5.53e-08;7!UBERON:0009142;5.53e-08;7 | |||
|ontology_enrichment_uberon_v019_2= | |||
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| |||
|short_description=p56@COL1A1 | |||
}} |
Revision as of 14:29, 11 September 2013
Short description: | p56@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_56_at_COL1A1_5end |
Coexpression cluster: | NA |
Association with transcript: | 40bp_to_ENST00000507689_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebellum | 3.51e-10 | 3 |
central nervous system pericyte | 4.45e-08 | 2 |
extraembryonic cell | 9.98e-08 | 19 |
oligodendrocyte | 1.52e-07 | 7 |
macroglial cell | 1.52e-07 | 7 |
astrocyte | 1.52e-07 | 7 |
oligodendrocyte precursor cell | 1.52e-07 | 7 |
hepatic stem cell | 1.90e-07 | 2 |
hepatic mesenchymal stem cell | 1.90e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.