FFCP PHASE1:Hg19::chr17:46626844..46626857,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=|TSSclassifier=N|UniProt=|association_with_transcript=-389bp_to_ENST00000465846_5end|coexpression_cluster_id=C45|description=CAGE_peak_1_at_ENST00000465846_5end|id=chr17:46626844..46626857,+|ontology_enrichment_celltype=CL:0002322!1.22e-07!5;CL:0000188!1.41e-07!9|ontology_enrichment_celltype_v019=CL:0000039;2.39e-19;7!CL:0000586;2.39e-19;7!CL:0002553;9.83e-10;1!CL:0000167;3.25e-09;1!CL:0000164;3.25e-09;1!CL:0000502;3.25e-09;1!CL:0000172;3.25e-09;1!CL:0000228;3.25e-09;1!CL:0002372;3.25e-09;1!CL:0000173;3.25e-09;1!CL:0002322;2.32e-07;5!CL:0002559;3.23e-07;5|ontology_enrichment_celltype_v019_2=CL:0000039,2.19e-19,7;CL:0000586,2.19e-19,7;CL:0002553,1.03e-09,1;CL:0000167,1.84e-09,1;CL:0000164,1.84e-09,1;CL:0000502,1.84e-09,1;CL:0000172,1.84e-09,1;CL:0000173,1.84e-09,1;CL:0002351,1.84e-09,1;CL:0000228,1.99e-09,1;CL:0002372,1.99e-09,1;CL:0002322,1.95e-07,5;CL:0002559,3.04e-07,5|ontology_enrichment_development_v019=UBERON:0009117;1.32e-13;10!UBERON:0005564;1.32e-13;10!UBERON:0009143;1.37e-09;1!CL:0002351;3.25e-09;1!UBERON:0005754;3.25e-09;1!UBERON:0003918;9.70e-08;10!UBERON:0007687;9.70e-08;10|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3095;3.07e-09;22!DOID:2994;3.07e-09;22!DOID:4430;3.25e-09;1|ontology_enrichment_disease_v019_2=DOID:4430,1.84e-09,1;DOID:3095,2.62e-09,22;DOID:2994,2.62e-09,22|ontology_enrichment_uberon=UBERON:0003135!4.74e-13!11;UBERON:0000473!1.27e-10!8;UBERON:0005177!1.44e-09!107;UBERON:0000464!2.10e-08!104;UBERON:0006947!6.24e-08!3;UBERON:0004054!6.24e-08!3;UBERON:0009569!8.34e-08!113;UBERON:0000466!8.97e-08!126;UBERON:0000489!1.62e-07!32;UBERON:0003076!1.82e-07!15;UBERON:0003057!1.82e-07!15;UBERON:0002100!3.06e-07!216;UBERON:0002240!3.75e-07!3;UBERON:0005178!4.97e-07!34;UBERON:0002224!4.97e-07!34;UBERON:0005181!9.42e-07!35|ontology_enrichment_uberon_v019=UBERON:0003135;2.54e-26;11!UBERON:0000473;1.14e-25;8!UBERON:0003101;6.08e-13;22!UBERON:0000079;6.08e-13;22!UBERON:0006947;1.87e-11;3!UBERON:0004054;1.87e-11;3!UBERON:0000991;1.09e-09;21!UBERON:0001000;3.25e-09;1!UBERON:0000998;3.25e-09;1!UBERON:0006868;3.25e-09;1!UBERON:0005352;3.25e-09;1!UBERON:0005904;8.20e-09;4!UBERON:0000058;1.24e-07;10!UBERON:0002073;3.23e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0003135,2.78e-26,11;UBERON:0000473,1.08e-25,8;UBERON:0003101,6.36e-13,22;UBERON:0000079,6.36e-13,22;UBERON:0006947,2.31e-11,3;UBERON:0004054,2.31e-11,3;UBERON:0000991,1.07e-09,21;UBERON:0009196,1.07e-09,21;UBERON:0009117,1.07e-09,21;UBERON:0005564,1.07e-09,21;UBERON:0004176,3.02e-09,22;UBERON:0000998,3.53e-09,1;UBERON:0006868,3.53e-09,1;UBERON:0001000,4.15e-09,1;UBERON:0005352,4.15e-09,1;UBERON:0005904,9.62e-09,4;UBERON:0003133,1.45e-07,48;UBERON:0002073,3.04e-07,5;UBERON:0005086,3.04e-07,5|phase1_expression=0.181678379270557,0,0.281908808191942,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0.626909442956176,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294605907474837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352303495931295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265059536642971,1.39432731443422,2.38420426535352,0.252320850875628,0,0,1.28648187638577,0,1.39310378409594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,1.42636905040718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0.300946099727719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128139149255701,0,0,0,0.154209693802656,0.177561725313127,0,0,0.232420756919918,0,0,0,0,0,0,0,0,0,0,0.633309773357254,0,0,0,0,0,0,0,0,0.671624264166535,0,0,0,0,0,0.824328093181778,0,0,0,0,0,0.096670718292122,0.154048617114644,0.307007349452259,0.137836572484531,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511795582622668,0,0,0,0.359744915166629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15755106853338,0.655894752046633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42068073403207,0,0,0,0,0,0,0,0,0.19924798825107,0,0.251932747854276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41832609060762,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06149077404007,0.611030144933625,0,0,0,0,0,0,0,0,0.242780379534093,1.18375320854817,0,0,0,0,0.414752765588989,0,0,0,0,0.284609546029793,0.832048038078832,0,0,0,0.698906672968121,0.171986032471617,0,0,0,2.13375836274523,0,0,0,0,0,0,0,0,0,0,0.458146384663663,0.343189995723929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0,0,1.33969702408637,2.04572893726493,0,0,0,0,0,0.76280561296425,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0.213574825135389,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18628920882415,0,0,0,0,0,0,1.01444720027578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.00013882331577,0,0,0,0,0,0,0,0,0,0,0,0,1.23682402162117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.20228299314188,0,0.3062454773532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0.295712172434091,0,0,0,0,0,0,0,0.703484977438482,0.127762427639595,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,1.04617282831313,0,0,0,0,0,0,0,0.0852134047591577,1.27016115057279,0,0,0,0,0,0,0,0,0,0,2.10545517115895,0,0,0,0,0.452888530700021,0.308696632431779,0.218559560503957,0,0,1.64973582971138,0.196308467114945,0.594092800654172,0.4226557275834,0,0.0939839179798536,0.45120521581504,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327796715891087,0,3.3656313814854,4.27547848424897,5.05421947441647,2.25636785363138,0.151557396436479,0,0,0,0,0.476128862927481,0,0,0,0,0,0,0,0,0,0.665320713092027,0,0,0,0,0,0,0,0,0,0|short_description=p1@ENST00000465846}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC= | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=-389bp_to_ENST00000465846_5end | |||
|coexpression_cluster_id=C45 | |||
|description=CAGE_peak_1_at_ENST00000465846_5end | |||
|id=chr17:46626844..46626857,+ | |||
|ontology_enrichment_celltype=CL:0002322!1.22e-07!5;CL:0000188!1.41e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000039;2.39e-19;7!CL:0000586;2.39e-19;7!CL:0002553;9.83e-10;1!CL:0000167;3.25e-09;1!CL:0000164;3.25e-09;1!CL:0000502;3.25e-09;1!CL:0000172;3.25e-09;1!CL:0000228;3.25e-09;1!CL:0002372;3.25e-09;1!CL:0000173;3.25e-09;1!CL:0002322;2.32e-07;5!CL:0002559;3.23e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,2.19e-19,7;CL:0000586,2.19e-19,7;CL:0002553,1.03e-09,1;CL:0000167,1.84e-09,1;CL:0000164,1.84e-09,1;CL:0000502,1.84e-09,1;CL:0000172,1.84e-09,1;CL:0000173,1.84e-09,1;CL:0002351,1.84e-09,1;CL:0000228,1.99e-09,1;CL:0002372,1.99e-09,1;CL:0002322,1.95e-07,5;CL:0002559,3.04e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.32e-13;10!UBERON:0005564;1.32e-13;10!UBERON:0009143;1.37e-09;1!CL:0002351;3.25e-09;1!UBERON:0005754;3.25e-09;1!UBERON:0003918;9.70e-08;10!UBERON:0007687;9.70e-08;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3095;3.07e-09;22!DOID:2994;3.07e-09;22!DOID:4430;3.25e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:4430,1.84e-09,1;DOID:3095,2.62e-09,22;DOID:2994,2.62e-09,22 | |||
|ontology_enrichment_uberon=UBERON:0003135!4.74e-13!11;UBERON:0000473!1.27e-10!8;UBERON:0005177!1.44e-09!107;UBERON:0000464!2.10e-08!104;UBERON:0006947!6.24e-08!3;UBERON:0004054!6.24e-08!3;UBERON:0009569!8.34e-08!113;UBERON:0000466!8.97e-08!126;UBERON:0000489!1.62e-07!32;UBERON:0003076!1.82e-07!15;UBERON:0003057!1.82e-07!15;UBERON:0002100!3.06e-07!216;UBERON:0002240!3.75e-07!3;UBERON:0005178!4.97e-07!34;UBERON:0002224!4.97e-07!34;UBERON:0005181!9.42e-07!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0003135;2.54e-26;11!UBERON:0000473;1.14e-25;8!UBERON:0003101;6.08e-13;22!UBERON:0000079;6.08e-13;22!UBERON:0006947;1.87e-11;3!UBERON:0004054;1.87e-11;3!UBERON:0000991;1.09e-09;21!UBERON:0001000;3.25e-09;1!UBERON:0000998;3.25e-09;1!UBERON:0006868;3.25e-09;1!UBERON:0005352;3.25e-09;1!UBERON:0005904;8.20e-09;4!UBERON:0000058;1.24e-07;10!UBERON:0002073;3.23e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003135,2.78e-26,11;UBERON:0000473,1.08e-25,8;UBERON:0003101,6.36e-13,22;UBERON:0000079,6.36e-13,22;UBERON:0006947,2.31e-11,3;UBERON:0004054,2.31e-11,3;UBERON:0000991,1.07e-09,21;UBERON:0009196,1.07e-09,21;UBERON:0009117,1.07e-09,21;UBERON:0005564,1.07e-09,21;UBERON:0004176,3.02e-09,22;UBERON:0000998,3.53e-09,1;UBERON:0006868,3.53e-09,1;UBERON:0001000,4.15e-09,1;UBERON:0005352,4.15e-09,1;UBERON:0005904,9.62e-09,4;UBERON:0003133,1.45e-07,48;UBERON:0002073,3.04e-07,5;UBERON:0005086,3.04e-07,5 | |||
|phase1_expression=0.181678379270557,0,0.281908808191942,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0.626909442956176,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294605907474837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352303495931295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265059536642971,1.39432731443422,2.38420426535352,0.252320850875628,0,0,1.28648187638577,0,1.39310378409594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,1.42636905040718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0.300946099727719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128139149255701,0,0,0,0.154209693802656,0.177561725313127,0,0,0.232420756919918,0,0,0,0,0,0,0,0,0,0,0.633309773357254,0,0,0,0,0,0,0,0,0.671624264166535,0,0,0,0,0,0.824328093181778,0,0,0,0,0,0.096670718292122,0.154048617114644,0.307007349452259,0.137836572484531,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511795582622668,0,0,0,0.359744915166629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15755106853338,0.655894752046633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42068073403207,0,0,0,0,0,0,0,0,0.19924798825107,0,0.251932747854276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41832609060762,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06149077404007,0.611030144933625,0,0,0,0,0,0,0,0,0.242780379534093,1.18375320854817,0,0,0,0,0.414752765588989,0,0,0,0,0.284609546029793,0.832048038078832,0,0,0,0.698906672968121,0.171986032471617,0,0,0,2.13375836274523,0,0,0,0,0,0,0,0,0,0,0.458146384663663,0.343189995723929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0,0,1.33969702408637,2.04572893726493,0,0,0,0,0,0.76280561296425,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0.213574825135389,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18628920882415,0,0,0,0,0,0,1.01444720027578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.00013882331577,0,0,0,0,0,0,0,0,0,0,0,0,1.23682402162117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.20228299314188,0,0.3062454773532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0.295712172434091,0,0,0,0,0,0,0,0.703484977438482,0.127762427639595,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,1.04617282831313,0,0,0,0,0,0,0,0.0852134047591577,1.27016115057279,0,0,0,0,0,0,0,0,0,0,2.10545517115895,0,0,0,0,0.452888530700021,0.308696632431779,0.218559560503957,0,0,1.64973582971138,0.196308467114945,0.594092800654172,0.4226557275834,0,0.0939839179798536,0.45120521581504,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327796715891087,0,3.3656313814854,4.27547848424897,5.05421947441647,2.25636785363138,0.151557396436479,0,0,0,0,0.476128862927481,0,0,0,0,0,0,0,0,0,0.665320713092027,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@ENST00000465846 | |||
}} |
Revision as of 14:14, 11 September 2013
Short description: | p1@ENST00000465846 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_ENST00000465846_5end |
Coexpression cluster: | C45_testicular_choriocarcinoma_H9_teratocarcinoma_Wilms_pancreatic_iPS |
Association with transcript: | -389bp_to_ENST00000465846_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 2.19e-19 | 7 |
germ cell | 2.19e-19 | 7 |
lung fibroblast | 1.03e-09 | 1 |
peptide hormone secreting cell | 1.84e-09 | 1 |
enteroendocrine cell | 1.84e-09 | 1 |
type D enteroendocrine cell | 1.84e-09 | 1 |
somatostatin secreting cell | 1.84e-09 | 1 |
pancreatic D cell | 1.84e-09 | 1 |
progenitor cell of endocrine pancreas | 1.84e-09 | 1 |
multinucleate cell | 1.99e-09 | 1 |
myotube | 1.99e-09 | 1 |
embryonic stem cell | 1.95e-07 | 5 |
hair follicle cell | 3.04e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
male reproductive organ | 2.78e-26 | 11 |
testis | 1.08e-25 | 8 |
male organism | 6.36e-13 | 22 |
male reproductive system | 6.36e-13 | 22 |
male genital duct | 2.31e-11 | 3 |
internal male genitalia | 2.31e-11 | 3 |
gonad | 1.07e-09 | 21 |
indifferent external genitalia | 1.07e-09 | 21 |
indifferent gonad | 1.07e-09 | 21 |
gonad primordium | 1.07e-09 | 21 |
external genitalia | 3.02e-09 | 22 |
seminal vesicle | 3.53e-09 | 1 |
seminal fluid secreting gland | 3.53e-09 | 1 |
vas deferens | 4.15e-09 | 1 |
spermatic cord | 4.15e-09 | 1 |
duct of male reproductive system | 9.62e-09 | 4 |
reproductive organ | 1.45e-07 | 48 |
hair follicle | 3.04e-07 | 5 |
hair follicle placode | 3.04e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
somatostatinoma | 1.84e-09 | 1 |
germ cell and embryonal cancer | 2.62e-09 | 22 |
germ cell cancer | 2.62e-09 | 22 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.