FFCP PHASE1:Hg19::chr17:39678008..39678038,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3866|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6421|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000463447,ENST00000474031,uc002hxb.1,uc002hxc.1_5end|description=CAGE_peak_2_at_KRT15_5end|id=chr17:39678008..39678038,-|ontology_enrichment_celltype=CL:0000066!1.77e-33!254;CL:0002076!1.09e-15!43;CL:0000220!1.12e-13!246;CL:0000223!1.46e-13!59;CL:0002321!3.01e-13!248;CL:0000548!4.34e-13!679;CL:0000004!4.34e-13!679;CL:0000255!4.34e-13!679;CL:0000012!1.28e-12!682;CL:0000076!2.27e-12!62;CL:0000063!8.54e-12!578;CL:0002368!5.04e-09!13;CL:0000003!1.57e-07!722;CL:0002251!4.49e-07!21;CL:1000497!8.05e-07!18;CL:0002518!8.05e-07!18;CL:0002202!9.45e-07!9;CL:0002632!9.45e-07!9;CL:0000144!9.64e-07!625|ontology_enrichment_celltype_v019=CL:0002076;1.74e-12;42!CL:0002368;6.91e-11;13!CL:0002202;1.54e-08;9!CL:0002632;1.54e-08;9!CL:0002251;3.29e-08;20!CL:1000497;6.34e-07;17!CL:0002518;6.34e-07;17!CL:0002681;7.08e-07;12!CL:0002584;7.08e-07;12|ontology_enrichment_celltype_v019_2=CL:0000066,1.14e-24,253;CL:0002076,3.51e-17,42;CL:0000223,2.07e-12,58;CL:0002368,4.70e-11,13;CL:0002321,5.28e-11,250;CL:0002202,1.50e-08,9;CL:0002632,1.50e-08,9;CL:0002251,1.64e-08,20;CL:0000076,2.61e-08,63;CL:1000497,4.11e-07,17;CL:0002518,4.11e-07,17;CL:0002681,5.75e-07,12;CL:0002584,5.75e-07,12;CL:1000449,8.82e-07,15|ontology_enrichment_development_v019=CL:0000223;9.41e-07;58|ontology_enrichment_disease=DOID:305!1.08e-10!106;DOID:1749!6.06e-08!14;DOID:0050687!1.43e-07!143;DOID:193!2.10e-07!29;DOID:14566!2.82e-07!239|ontology_enrichment_disease_v019=DOID:1749;2.73e-10;14|ontology_enrichment_disease_v019_2=DOID:1749,1.91e-10,14;DOID:14566,1.43e-07,239;DOID:305,8.64e-07,106|ontology_enrichment_uberon=UBERON:0004119!2.84e-09!169;UBERON:0000925!2.84e-09!169;UBERON:0006595!2.84e-09!169;UBERON:0005153!3.28e-09!37;UBERON:0000464!4.39e-09!104;UBERON:0003914!2.24e-08!118;UBERON:0000466!2.32e-08!126;UBERON:0005911!6.98e-08!82;UBERON:0006554!1.23e-07!44;UBERON:0000467!1.87e-07!625;UBERON:0000480!2.45e-07!626;UBERON:0001008!3.08e-07!45;UBERON:0001007!4.38e-07!155;UBERON:0001555!4.38e-07!155;UBERON:0007026!4.38e-07!155;UBERON:0003100!5.13e-07!41;UBERON:0002100!8.55e-07!216|ontology_enrichment_uberon_v019=UBERON:0003343;3.59e-07;4!UBERON:0004785;3.59e-07;4!UBERON:0001225;7.08e-07;12!UBERON:0008987;7.08e-07;12|ontology_enrichment_uberon_v019_2=UBERON:0003343,2.72e-07,4;UBERON:0004785,2.72e-07,4;UBERON:0001225,5.75e-07,12;UBERON:0008987,5.75e-07,12;UBERON:0004211,8.82e-07,15;UBERON:0009773,8.82e-07,15;UBERON:0001231,8.82e-07,15;UBERON:0001285,8.82e-07,15;UBERON:0007684,8.82e-07,15;UBERON:0004208,8.82e-07,15|phase1_expression=0,0,0,0,0,0,0,0.631719873426831,0,0.245733936501509,4.18680700783456,0,0.527533956456907,0,0,1.34465029290355,0,0.730310090387373,2.43966399395253,0.123121058076788,0,0,0.286235987131057,0,0,0,0,0,0,0,0,3.67768489791571,2.71085326900425,5.17655614233503,0,0,0,0,0,0,0,0,0,0.872389432677388,0.377875943688809,0.485168122375632,0,0,0,0.28769239232215,0,0.236482229888585,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0.56738522469114,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0,0.795285947051099,0,0,0.665188192387692,0.175669571386252,0.0654895377488563,1.82147644146271,1.11235332835329,0,0,0,0,0,0,0.79504962946682,4.30117297553062,1.38856200643038,0,1.25849830862972,0,1.04497483268405,0.516833518338658,0.35576626268671,0,0,0.760272105718513,0.488124115096339,0.367663080345869,0.81014194788176,0.625098097988558,0.44905874525234,0.337834441449967,0,0.949265659568129,2.38162267109529,0,0,1.74437620857014,0,0.379891534993739,0.662045904066094,0.286836620748814,0.354668382198357,0,1.06748995729705,0.98667019366864,0,0,0.653847612453835,0,0,0,0,0,0.298897361103602,0.117434498643765,0.161872944368132,0.140450806702248,0.408308342509787,0.61417158655884,0.206651562351531,0,0,1.82032272387605,2.87447256726495,0.505008341862199,0.500474079487857,0.277064115484183,0.438977620880838,0.919463387397059,0,0.113432183160021,0.717558542755448,0,0.635795703478686,0.900273288253207,0.206105058476878,0,0.558350568994769,0.843881661206331,0.487185025805993,0,0,0,0.355009592516614,0.403008392910561,0.339121184620975,3.86521706326594,1.36373060295417,1.72082757233402,0,0,0,0,0,0,0,0,0,0,0.721879481669586,0,0,0,0,0.217879444092406,0,0.134831308160164,0,0,0.738155454624648,0,0,0,0,0,0,0,0.983907508344908,0.343135620597051,0.878002283269004,0,1.00528972411631,0.925884451585296,0,0,1.44331342025273,0,0.117408694235822,0,0.462985512576611,0,0,0.858486162094873,0,0,0,1.87467667973554,1.17587489739202,2.55195175036296,12.8068687465073,11.6253575405585,4.60059214998253,0,0,0,0,0,0,0.381988425558278,0,0,0,0,0,0.224262168690721,0,0.36669142910475,0.129271715757778,0,0,0.26593811658487,0,0.257207374262142,0,0.532844358032199,0,0,0,0,0,0.791951872933429,1.50719688529793,1.7430669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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3866 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6421 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000463447,ENST00000474031,uc002hxb.1,uc002hxc.1_5end | |||
|description=CAGE_peak_2_at_KRT15_5end | |||
|id=chr17:39678008..39678038,- | |||
|ontology_enrichment_celltype=CL:0000066!1.77e-33!254;CL:0002076!1.09e-15!43;CL:0000220!1.12e-13!246;CL:0000223!1.46e-13!59;CL:0002321!3.01e-13!248;CL:0000548!4.34e-13!679;CL:0000004!4.34e-13!679;CL:0000255!4.34e-13!679;CL:0000012!1.28e-12!682;CL:0000076!2.27e-12!62;CL:0000063!8.54e-12!578;CL:0002368!5.04e-09!13;CL:0000003!1.57e-07!722;CL:0002251!4.49e-07!21;CL:1000497!8.05e-07!18;CL:0002518!8.05e-07!18;CL:0002202!9.45e-07!9;CL:0002632!9.45e-07!9;CL:0000144!9.64e-07!625 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.74e-12;42!CL:0002368;6.91e-11;13!CL:0002202;1.54e-08;9!CL:0002632;1.54e-08;9!CL:0002251;3.29e-08;20!CL:1000497;6.34e-07;17!CL:0002518;6.34e-07;17!CL:0002681;7.08e-07;12!CL:0002584;7.08e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.14e-24,253;CL:0002076,3.51e-17,42;CL:0000223,2.07e-12,58;CL:0002368,4.70e-11,13;CL:0002321,5.28e-11,250;CL:0002202,1.50e-08,9;CL:0002632,1.50e-08,9;CL:0002251,1.64e-08,20;CL:0000076,2.61e-08,63;CL:1000497,4.11e-07,17;CL:0002518,4.11e-07,17;CL:0002681,5.75e-07,12;CL:0002584,5.75e-07,12;CL:1000449,8.82e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000223;9.41e-07;58 | |||
|ontology_enrichment_disease=DOID:305!1.08e-10!106;DOID:1749!6.06e-08!14;DOID:0050687!1.43e-07!143;DOID:193!2.10e-07!29;DOID:14566!2.82e-07!239 | |||
|ontology_enrichment_disease_v019=DOID:1749;2.73e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.91e-10,14;DOID:14566,1.43e-07,239;DOID:305,8.64e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.84e-09!169;UBERON:0000925!2.84e-09!169;UBERON:0006595!2.84e-09!169;UBERON:0005153!3.28e-09!37;UBERON:0000464!4.39e-09!104;UBERON:0003914!2.24e-08!118;UBERON:0000466!2.32e-08!126;UBERON:0005911!6.98e-08!82;UBERON:0006554!1.23e-07!44;UBERON:0000467!1.87e-07!625;UBERON:0000480!2.45e-07!626;UBERON:0001008!3.08e-07!45;UBERON:0001007!4.38e-07!155;UBERON:0001555!4.38e-07!155;UBERON:0007026!4.38e-07!155;UBERON:0003100!5.13e-07!41;UBERON:0002100!8.55e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0003343;3.59e-07;4!UBERON:0004785;3.59e-07;4!UBERON:0001225;7.08e-07;12!UBERON:0008987;7.08e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003343,2.72e-07,4;UBERON:0004785,2.72e-07,4;UBERON:0001225,5.75e-07,12;UBERON:0008987,5.75e-07,12;UBERON:0004211,8.82e-07,15;UBERON:0009773,8.82e-07,15;UBERON:0001231,8.82e-07,15;UBERON:0001285,8.82e-07,15;UBERON:0007684,8.82e-07,15;UBERON:0004208,8.82e-07,15 | |||
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| |||
|short_description=p2@KRT15 | |||
}} |
Revision as of 13:34, 11 September 2013
Short description: | p2@KRT15 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_KRT15_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000463447, ENST00000474031, uc002hxb.1, uc002hxc.1_5end |
EntrezGene: | KRT15 |
HGNC: | 6421 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.14e-24 | 253 |
endo-epithelial cell | 3.51e-17 | 42 |
endodermal cell | 2.07e-12 | 58 |
respiratory epithelial cell | 4.70e-11 | 13 |
embryonic cell | 5.28e-11 | 250 |
epithelial cell of tracheobronchial tree | 1.50e-08 | 9 |
epithelial cell of lower respiratory tract | 1.50e-08 | 9 |
epithelial cell of alimentary canal | 1.64e-08 | 20 |
squamous epithelial cell | 2.61e-08 | 63 |
kidney cell | 4.11e-07 | 17 |
kidney epithelial cell | 4.11e-07 | 17 |
kidney cortical cell | 5.75e-07 | 12 |
renal cortical epithelial cell | 5.75e-07 | 12 |
epithelial cell of nephron | 8.82e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
mucosa of oral region | 2.72e-07 | 4 |
respiratory system mucosa | 2.72e-07 | 4 |
cortex of kidney | 5.75e-07 | 12 |
renal parenchyma | 5.75e-07 | 12 |
nephron epithelium | 8.82e-07 | 15 |
renal tubule | 8.82e-07 | 15 |
nephron tubule | 8.82e-07 | 15 |
nephron | 8.82e-07 | 15 |
uriniferous tubule | 8.82e-07 | 15 |
nephrogenic mesenchyme | 8.82e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.91e-10 | 14 |
disease of cellular proliferation | 1.43e-07 | 239 |
carcinoma | 8.64e-07 | 106 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.