FFCP PHASE1:Hg19::chr17:19651654..19651665,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=218|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=405|TSSclassifier=S|UniProt=A8MYB8,E9PNN6|association_with_transcript=0bp_to_ENST00000395555,ENST00000468746_5end|coexpression_cluster_id=C742|description=CAGE_peak_3_at_ALDH3A1_5end|id=chr17:19651654..19651665,-|ontology_enrichment_celltype=CL:0002076!2.60e-23!43;CL:0000223!3.40e-23!59;CL:0000066!5.68e-17!254;CL:0002368!1.59e-11!13;CL:0002251!2.07e-11!21;CL:0000082!1.15e-07!19;CL:0002202!8.24e-07!9;CL:0002632!8.24e-07!9|ontology_enrichment_celltype_v019=CL:0002251;3.24e-13;20!CL:0002623;1.75e-11;3!CL:0002076;1.01e-09;42!CL:0000575;4.87e-08;2!CL:0000622;4.63e-07;5!CL:0002368;5.01e-07;13!CL:0000082;5.83e-07;19!CL:0002202;6.48e-07;9!CL:0002632;6.48e-07;9|ontology_enrichment_celltype_v019_2=CL:0002076,5.13e-14,42;CL:0002251,3.17e-13,20;CL:0000223,2.44e-12,58;CL:0002623,1.92e-11,3;CL:0000066,2.33e-11,253;CL:0000575,4.70e-08,2;CL:0002368,4.72e-07,13;CL:0000622,4.89e-07,5;CL:0000082,5.49e-07,19;CL:0002202,6.28e-07,9;CL:0002632,6.28e-07,9|ontology_enrichment_development_v019=UBERON:0008947;1.37e-18;29!UBERON:0006595;2.43e-07;86!CL:0000223;6.07e-07;58!UBERON:0001041;6.18e-07;30|ontology_enrichment_disease=DOID:305!5.23e-21!106;DOID:0050687!3.65e-12!143|ontology_enrichment_disease_v019=DOID:3493;1.30e-08;2!DOID:1749;6.52e-07;14|ontology_enrichment_disease_v019_2=DOID:305,2.04e-14,106;DOID:0050687,3.30e-09,143;DOID:3493,1.14e-08,2;DOID:1749,6.60e-07,14|ontology_enrichment_uberon=UBERON:0004119!2.73e-34!169;UBERON:0000925!2.73e-34!169;UBERON:0006595!2.73e-34!169;UBERON:0001007!5.80e-34!155;UBERON:0001555!5.80e-34!155;UBERON:0007026!5.80e-34!155;UBERON:0004921!1.12e-31!129;UBERON:0004185!1.12e-31!129;UBERON:0000077!1.31e-31!130;UBERON:0001041!3.83e-29!98;UBERON:0001004!8.30e-28!72;UBERON:0000065!3.39e-25!53;UBERON:0008947!8.24e-23!38;UBERON:0003258!8.24e-23!38;UBERON:0000072!3.96e-19!46;UBERON:0001737!1.68e-14!9;UBERON:0003104!6.41e-14!238;UBERON:0009142!6.41e-14!238;UBERON:0005178!1.02e-12!34;UBERON:0002224!1.02e-12!34;UBERON:0005181!3.35e-12!35;UBERON:0000481!1.49e-11!347;UBERON:0000466!3.87e-11!126;UBERON:0001557!9.60e-11!19;UBERON:0005911!1.84e-10!82;UBERON:0005177!2.10e-10!107;UBERON:0000063!4.22e-10!97;UBERON:0000464!1.05e-09!104;UBERON:0002048!2.53e-09!22;UBERON:0000117!2.53e-09!22;UBERON:0000171!2.53e-09!22;UBERON:0000170!2.53e-09!22;UBERON:0005597!2.53e-09!22;UBERON:0000118!2.53e-09!22;UBERON:0001048!3.33e-09!168;UBERON:0005153!7.03e-09!37;UBERON:0005157!4.57e-08!51;UBERON:0000161!1.00e-07!35;UBERON:0004802!1.15e-07!19;UBERON:0000115!1.15e-07!19;UBERON:0002075!2.63e-07!18;UBERON:0000062!3.57e-07!511;UBERON:0007196!4.92e-07!14;UBERON:0001558!4.92e-07!14;UBERON:0001045!8.80e-07!11|ontology_enrichment_uberon_v019=UBERON:0000072;2.91e-16;37!UBERON:0000065;3.86e-16;44!UBERON:0005178;1.91e-14;34!UBERON:0002224;1.91e-14;34!UBERON:0001737;2.35e-13;9!UBERON:0001557;2.35e-13;9!UBERON:0005181;2.54e-13;35!UBERON:0001041;9.09e-12;14!UBERON:0001004;2.32e-10;65!UBERON:0002048;4.76e-10;22!UBERON:0000117;4.76e-10;22!UBERON:0000171;4.76e-10;22!UBERON:0000170;4.76e-10;22!UBERON:0006562;1.04e-08;2!UBERON:0000964;1.32e-08;4!UBERON:0010409;1.32e-08;4!UBERON:0004802;5.83e-07;19!UBERON:0000115;5.83e-07;19!UBERON:0000915;9.71e-07;52|ontology_enrichment_uberon_v019_2=UBERON:0001004,3.11e-27,74;UBERON:0001041,3.81e-26,87;UBERON:0008947,4.45e-24,38;UBERON:0003258,4.45e-24,38;UBERON:0000065,1.91e-22,54;UBERON:0001007,8.72e-21,145;UBERON:0001555,8.72e-21,145;UBERON:0007026,8.72e-21,145;UBERON:0004119,1.82e-19,160;UBERON:0000925,1.82e-19,160;UBERON:0006595,1.82e-19,160;UBERON:0004921,7.28e-19,118;UBERON:0000072,8.85e-19,47;UBERON:0005178,5.30e-16,34;UBERON:0002224,5.30e-16,34;UBERON:0005181,1.85e-15,35;UBERON:0001737,2.30e-13,9;UBERON:0001557,1.20e-10,19;UBERON:0002048,4.86e-10,22;UBERON:0000117,4.86e-10,22;UBERON:0000171,4.86e-10,22;UBERON:0000170,4.86e-10,22;UBERON:0005597,4.86e-10,22;UBERON:0000118,4.86e-10,22;UBERON:0005177,8.12e-10,101;UBERON:0000915,1.88e-09,52;UBERON:0005157,6.22e-09,47;UBERON:0011216,7.02e-09,223;UBERON:0000964,1.41e-08,4;UBERON:0010409,1.41e-08,4;UBERON:0004348,1.41e-08,4;UBERON:0005427,1.41e-08,4;UBERON:0001048,2.43e-07,160;UBERON:0000166,3.29e-07,22;UBERON:0000153,4.39e-07,62;UBERON:0007811,4.39e-07,62;UBERON:0004802,5.49e-07,19;UBERON:0000115,5.49e-07,19;UBERON:0000033,8.12e-07,56;UBERON:0000165,9.45e-07,29;UBERON:0000930,9.45e-07,29|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.74259811776028,1.32558950291166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,4.59710612239464,0.6024118375565,4.80680213216824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.869079113764942,0,0,0,0,0,0.982343066232845,2.18577172975525,1.48313777113772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3082821564276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=218 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=405 | |||
|TSSclassifier=S | |||
|UniProt=A8MYB8,E9PNN6 | |||
|association_with_transcript=0bp_to_ENST00000395555,ENST00000468746_5end | |||
|coexpression_cluster_id=C742 | |||
|description=CAGE_peak_3_at_ALDH3A1_5end | |||
|id=chr17:19651654..19651665,- | |||
|ontology_enrichment_celltype=CL:0002076!2.60e-23!43;CL:0000223!3.40e-23!59;CL:0000066!5.68e-17!254;CL:0002368!1.59e-11!13;CL:0002251!2.07e-11!21;CL:0000082!1.15e-07!19;CL:0002202!8.24e-07!9;CL:0002632!8.24e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0002251;3.24e-13;20!CL:0002623;1.75e-11;3!CL:0002076;1.01e-09;42!CL:0000575;4.87e-08;2!CL:0000622;4.63e-07;5!CL:0002368;5.01e-07;13!CL:0000082;5.83e-07;19!CL:0002202;6.48e-07;9!CL:0002632;6.48e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,5.13e-14,42;CL:0002251,3.17e-13,20;CL:0000223,2.44e-12,58;CL:0002623,1.92e-11,3;CL:0000066,2.33e-11,253;CL:0000575,4.70e-08,2;CL:0002368,4.72e-07,13;CL:0000622,4.89e-07,5;CL:0000082,5.49e-07,19;CL:0002202,6.28e-07,9;CL:0002632,6.28e-07,9 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.37e-18;29!UBERON:0006595;2.43e-07;86!CL:0000223;6.07e-07;58!UBERON:0001041;6.18e-07;30 | |||
|ontology_enrichment_disease=DOID:305!5.23e-21!106;DOID:0050687!3.65e-12!143 | |||
|ontology_enrichment_disease_v019=DOID:3493;1.30e-08;2!DOID:1749;6.52e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.04e-14,106;DOID:0050687,3.30e-09,143;DOID:3493,1.14e-08,2;DOID:1749,6.60e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.73e-34!169;UBERON:0000925!2.73e-34!169;UBERON:0006595!2.73e-34!169;UBERON:0001007!5.80e-34!155;UBERON:0001555!5.80e-34!155;UBERON:0007026!5.80e-34!155;UBERON:0004921!1.12e-31!129;UBERON:0004185!1.12e-31!129;UBERON:0000077!1.31e-31!130;UBERON:0001041!3.83e-29!98;UBERON:0001004!8.30e-28!72;UBERON:0000065!3.39e-25!53;UBERON:0008947!8.24e-23!38;UBERON:0003258!8.24e-23!38;UBERON:0000072!3.96e-19!46;UBERON:0001737!1.68e-14!9;UBERON:0003104!6.41e-14!238;UBERON:0009142!6.41e-14!238;UBERON:0005178!1.02e-12!34;UBERON:0002224!1.02e-12!34;UBERON:0005181!3.35e-12!35;UBERON:0000481!1.49e-11!347;UBERON:0000466!3.87e-11!126;UBERON:0001557!9.60e-11!19;UBERON:0005911!1.84e-10!82;UBERON:0005177!2.10e-10!107;UBERON:0000063!4.22e-10!97;UBERON:0000464!1.05e-09!104;UBERON:0002048!2.53e-09!22;UBERON:0000117!2.53e-09!22;UBERON:0000171!2.53e-09!22;UBERON:0000170!2.53e-09!22;UBERON:0005597!2.53e-09!22;UBERON:0000118!2.53e-09!22;UBERON:0001048!3.33e-09!168;UBERON:0005153!7.03e-09!37;UBERON:0005157!4.57e-08!51;UBERON:0000161!1.00e-07!35;UBERON:0004802!1.15e-07!19;UBERON:0000115!1.15e-07!19;UBERON:0002075!2.63e-07!18;UBERON:0000062!3.57e-07!511;UBERON:0007196!4.92e-07!14;UBERON:0001558!4.92e-07!14;UBERON:0001045!8.80e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0000072;2.91e-16;37!UBERON:0000065;3.86e-16;44!UBERON:0005178;1.91e-14;34!UBERON:0002224;1.91e-14;34!UBERON:0001737;2.35e-13;9!UBERON:0001557;2.35e-13;9!UBERON:0005181;2.54e-13;35!UBERON:0001041;9.09e-12;14!UBERON:0001004;2.32e-10;65!UBERON:0002048;4.76e-10;22!UBERON:0000117;4.76e-10;22!UBERON:0000171;4.76e-10;22!UBERON:0000170;4.76e-10;22!UBERON:0006562;1.04e-08;2!UBERON:0000964;1.32e-08;4!UBERON:0010409;1.32e-08;4!UBERON:0004802;5.83e-07;19!UBERON:0000115;5.83e-07;19!UBERON:0000915;9.71e-07;52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001004,3.11e-27,74;UBERON:0001041,3.81e-26,87;UBERON:0008947,4.45e-24,38;UBERON:0003258,4.45e-24,38;UBERON:0000065,1.91e-22,54;UBERON:0001007,8.72e-21,145;UBERON:0001555,8.72e-21,145;UBERON:0007026,8.72e-21,145;UBERON:0004119,1.82e-19,160;UBERON:0000925,1.82e-19,160;UBERON:0006595,1.82e-19,160;UBERON:0004921,7.28e-19,118;UBERON:0000072,8.85e-19,47;UBERON:0005178,5.30e-16,34;UBERON:0002224,5.30e-16,34;UBERON:0005181,1.85e-15,35;UBERON:0001737,2.30e-13,9;UBERON:0001557,1.20e-10,19;UBERON:0002048,4.86e-10,22;UBERON:0000117,4.86e-10,22;UBERON:0000171,4.86e-10,22;UBERON:0000170,4.86e-10,22;UBERON:0005597,4.86e-10,22;UBERON:0000118,4.86e-10,22;UBERON:0005177,8.12e-10,101;UBERON:0000915,1.88e-09,52;UBERON:0005157,6.22e-09,47;UBERON:0011216,7.02e-09,223;UBERON:0000964,1.41e-08,4;UBERON:0010409,1.41e-08,4;UBERON:0004348,1.41e-08,4;UBERON:0005427,1.41e-08,4;UBERON:0001048,2.43e-07,160;UBERON:0000166,3.29e-07,22;UBERON:0000153,4.39e-07,62;UBERON:0007811,4.39e-07,62;UBERON:0004802,5.49e-07,19;UBERON:0000115,5.49e-07,19;UBERON:0000033,8.12e-07,56;UBERON:0000165,9.45e-07,29;UBERON:0000930,9.45e-07,29 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.74259811776028,1.32558950291166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,4.59710612239464,0.6024118375565,4.80680213216824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.869079113764942,0,0,0,0,0,0.982343066232845,2.18577172975525,1.48313777113772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3082821564276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309977343527296,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0.37223371266318,0,0,0,0,0,0,0,0,0.57978255948989,0,0.286804595389004,0,0,0,0,0,0,0,0.643240938192885,0,0,0,1.65629520055781,1.34867752062481,2.16909926895134,1.21323370005633,0.871517776369625,0.949082476444386,1.34831308160164,0.98110732562673,1.92373578473195,0,0,0,0,0,0,0,0,0.983907508344908,0,0.439001141634502,0,0.100528972411631,1.574003567695,0,2.07986957055916,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0.500170521059677,0,0,0.178428988797162,0,0,0,0,0,0,0.184369168541703,0.0868836144680828,0.391602314925481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0.200506470303285,0.368323955743585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.47927373041467,0.384380134730212,0.127612712494584,0.910420027699949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.21310859268678,3.35151137767894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.12600539952579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.935702702041099,0,0,0,0,0,0,0,0,0,0,0,0,0.996239941255349,0.276283915531148,0,0,0,0,0,16.8279904195073,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0,9.55864965598197,0.762760950878299,0.709163045303809,0,0,0,0,0,0,0,0,0,0.762569244632931,8.3654246567162,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.848118428603645,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,1.9566461893209,0,0,0,0,0,0,0,3.98792323624311,0.992975867626496,2.82539626566503,3.58417289318877,0,0,0,10.5831789207528,0,0.17472666824203,0,0.483781656445426,0.511625219603299,0.574808199372465,3.4916045935831,0,0.677942222341597,0,0,0,1.75996244461323,0.0801588202515337,1.28071796843612,0,2.3054466744657,0,0,0.14405479798815,0,4.00679858848552,0,0,5.09991088181609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393915911536118,0.164831716762333,0.202210631562555,0.393709926058995,0,0,0,0,0,0,0,0,0,11.7402140659743,0,0,0,3.5857467866569,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,27.031720385724,120.523368816151,1.28144895081234,0,3.31391244277756,0,0,0,0,0,0,0,0,8.63797529376289,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.537266523244462,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,3.11038630016486,0,0,0,0,0,0,0,0,0,0,0,1.41070377476274,0,0,0,0,0,0,0.138314504928436,0,0,0,4.12894031717091,0,0,0,0,0,0.150420656698515,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0.496211178389294,0,12.9040051915991,0,0,0,0,0,0,1.20041606606193,0,0,0,0.111231401892069,0.156986185701028,0,0,0,0,0,0.0714765441766563,0,0,0,0,2.07216164163037,1.53646629384555,3.45629830907046,0,0,0,0,0.68732060563215,0.31020638566432,0,0,2.65005630761156,7.5589113489007,0,0,0,0,0,0,0,21.1209173412855,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,0,0,18.0339477991714,0,0,0.730336388246517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.19850972851471,0.23806443146374,0,0,0,0,0,3.70118471424834,0.684466602170562,2.08791364345221,4.30333232356058,0.665320713092027,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p3@ALDH3A1 | |||
}} |
Revision as of 12:33, 11 September 2013
Short description: | p3@ALDH3A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_ALDH3A1_5end |
Coexpression cluster: | C742_lung_gastric_trachea_bile_esophagus_gall_neuroectodermal |
Association with transcript: | 0bp_to_ENST00000395555, ENST00000468746_5end |
EntrezGene: | ALDH3A1 |
HGNC: | 405 |
UniProt: | A8MYB8E9PNN6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 5.13e-14 | 42 |
epithelial cell of alimentary canal | 3.17e-13 | 20 |
endodermal cell | 2.44e-12 | 58 |
acinar cell of salivary gland | 1.92e-11 | 3 |
epithelial cell | 2.33e-11 | 253 |
corneal epithelial cell | 4.70e-08 | 2 |
respiratory epithelial cell | 4.72e-07 | 13 |
acinar cell | 4.89e-07 | 5 |
epithelial cell of lung | 5.49e-07 | 19 |
epithelial cell of tracheobronchial tree | 6.28e-07 | 9 |
epithelial cell of lower respiratory tract | 6.28e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.04e-14 | 106 |
cell type cancer | 3.30e-09 | 143 |
signet ring cell adenocarcinoma | 1.14e-08 | 2 |
squamous cell carcinoma | 6.60e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.