FFCP PHASE1:Hg19::chr16:58663720..58663753,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=23019|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=7877|TSSclassifier=S|UniProt=A5YKK6,F8WA87,B3KPW6|association_with_transcript=0bp_to_ENST00000317147,ENST00000394200,ENST00000422872,ENST00000441024,NM_016284,NM_206999,uc002enu.3,uc002env.2,uc002enw.2,uc002enx.2,uc002enz.1_5end|description=CAGE_peak_1_at_CNOT1_5end|id=chr16:58663720..58663753,-|ontology_enrichment_celltype=CL:0000037!9.91e-44!172;CL:0000566!9.91e-44!172;CL:0002032!1.16e-41!165;CL:0000837!1.16e-41!165;CL:0000988!2.90e-38!182;CL:0000738!2.76e-37!140;CL:0002031!1.41e-32!124;CL:0002087!5.11e-32!119;CL:0000763!1.41e-26!112;CL:0000049!1.41e-26!112;CL:0000766!5.42e-20!76;CL:0000557!3.84e-19!71;CL:0000839!1.68e-18!70;CL:0002009!7.82e-18!65;CL:0002194!2.82e-17!63;CL:0000576!2.82e-17!63;CL:0000040!2.82e-17!63;CL:0000559!2.82e-17!63;CL:0000860!3.48e-15!45;CL:0002057!4.39e-14!42;CL:0000542!2.06e-13!53;CL:0000051!2.06e-13!53;CL:0000838!3.70e-13!52;CL:0000945!6.50e-07!24;CL:0000826!6.50e-07!24|ontology_enrichment_celltype_v019=CL:0000860;1.27e-13;33!CL:0002057;1.27e-13;33!CL:0000473;7.71e-12;39!CL:0000234;7.71e-12;39!CL:0000576;3.49e-11;48!CL:0002087;1.13e-10;104!CL:0000738;1.17e-08;136!CL:0000766;1.65e-08;69!CL:0000763;2.61e-08;100!CL:0000988;6.86e-08;177!CL:0000542;7.03e-08;53!CL:0000945;6.50e-07;24|ontology_enrichment_celltype_v019_2=CL:0000037,7.14e-43,168;CL:0002032,8.00e-41,161;CL:0000837,8.00e-41,161;CL:0000988,2.85e-38,177;CL:0000738,1.64e-36,136;CL:0002031,7.64e-32,120;CL:0002087,2.68e-31,115;CL:0000763,7.25e-26,108;CL:0000049,7.25e-26,108;CL:0000766,2.30e-19,72;CL:0000557,1.58e-18,67;CL:0000839,6.92e-18,66;CL:0002009,3.11e-17,61;CL:0002194,1.11e-16,59;CL:0000576,1.11e-16,59;CL:0000040,1.11e-16,59;CL:0000559,1.11e-16,59;CL:0000473,1.42e-14,48;CL:0000234,1.42e-14,48;CL:0000860,4.39e-14,42;CL:0002057,4.39e-14,42;CL:0000542,2.06e-13,53;CL:0000051,2.06e-13,53;CL:0000838,3.70e-13,52;CL:0000945,6.50e-07,24;CL:0000826,6.50e-07,24|ontology_enrichment_development_v019=CL:0002057;1.30e-10;42!CL:0000051;7.03e-08;53!CL:0000049;7.54e-08;108|ontology_enrichment_disease=DOID:162!2.53e-13!235;DOID:14566!3.39e-12!239;DOID:0050687!2.43e-09!143;DOID:2531!6.78e-09!51;DOID:0060083!6.78e-09!51;DOID:1240!1.51e-08!39;DOID:305!1.67e-08!106;DOID:0050686!5.05e-08!137|ontology_enrichment_disease_v019=DOID:1240;3.25e-07;39|ontology_enrichment_disease_v019_2=DOID:162,2.53e-13,235;DOID:14566,3.39e-12,239;DOID:0050687,2.43e-09,143;DOID:2531,6.78e-09,51;DOID:0060083,6.78e-09,51;DOID:1240,1.51e-08,39;DOID:305,1.67e-08,106;DOID:0050686,5.05e-08,137|ontology_enrichment_uberon=UBERON:0002390!5.62e-18!102;UBERON:0003061!5.62e-18!102;UBERON:0002193!4.33e-15!112;UBERON:0002371!7.73e-14!80;UBERON:0001474!2.87e-13!86;UBERON:0002405!2.60e-12!115;UBERON:0004765!3.34e-09!101;UBERON:0001434!3.34e-09!101|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.71e-17,98;UBERON:0003061,2.71e-17,98;UBERON:0002193,2.02e-14,108;UBERON:0002371,3.44e-13,76;UBERON:0001474,1.28e-12,82;UBERON:0002405,1.78e-12,93;UBERON:0004765,5.86e-10,90;UBERON:0001434,7.14e-08,100|phase1_expression=30.8853244759946,26.7625654863729,36.2252818526646,20.0146596706261,33.5220820820466,21.8084631025092,25.3299878168311,37.9031924056099,26.3797484481837,17.2013755551056,10.4670175195864,28.8342611211827,17.6723875413064,38.2438030646544,50.0410037349153,34.2885824690405,30.7374209292228,27.0214733443328,23.9087071407348,18.7144008276718,18.564062903227,16.9265549598167,59.2508493361287,57.89788180583,50.9703116754899,85.9650814664452,93.758873151838,88.7070505405165,66.4785627874648,78.6850266099286,48.1478143512996,23.9049518364521,33.1326510656075,49.9167913725163,97.6086727311801,113.0245398275,76.6297146663951,85.869288322441,95.8602458907277,97.8719026928492,114.420807336601,98.1397808037508,105.605982730016,78.8058454185241,79.35394817465,100.914969454132,101.339060090878,96.6244536851291,104.061340620755,121.406189559947,116.80928217727,96.0117853347656,113.076583281611,109.086911525667,74.484567626888,78.3088132497236,94.4255279200146,97.0805452802766,123.657892517845,107.832153097567,131.064110788803,106.212118660123,95.1441646855184,96.3267936203889,117.534741644577,156.598322014755,158.819673493872,101.253212098468,88.6520961314342,93.6083920679053,105.94491296084,108.273624980344,121.838019164741,53.0250768642974,61.2300383899325,52.2050027315856,52.5697993765597,61.7227029578591,79.0769886549634,59.8526761856622,48.9335025909762,56.0778952057426,58.0787606722365,80.8285144667955,62.2656477704488,68.7035658332077,69.2685057572302,71.2693025543559,50.9004552044344,63.9216015538694,153.687501659551,150.33272047896,162.466121953222,103.09363629164,104.815101277547,55.3106578027662,117.829152298186,108.863981281519,104.65116299075,72.726125494945,100.058135856512,90.9019787010688,103.258166056193,75.6477002250329,70.4108118864861,59.3710837484105,84.2200016309199,56.3601806792971,62.6886055238613,52.291253663969,48.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93886331,40.4192968202518,31.2260273978412,51.2657123837874,36.9152778181196,42.3197594747405,38.514802069915,46.9753148664367,36.402526584347,35.3697576338277,31.6544519439964,42.9028653977413,27.929875409059,63.474711046978,91.3480021878241,29.0183584655709,44.9153600188238,57.7578622635263,40.8322557665791,27.4833287973265,50.2160473535239,52.8300546378184,54.401758792398,65.3807245327391,57.1418586451121,51.4691209179486,33.1207352233347,52.1234304292025,100.742779669964,81.8447416330317,73.6044274151299,57.0041136992758,47.1883984807141,83.0456644799404,62.1960801108832,72.6570679217099,32.5486311558942,67.5343984744535,57.0728445780706,48.5381891786472,67.1843440835611,65.737706850077,54.6671793781177,55.8294093588432,71.5323130157691,52.4473517557938,67.1736747521318,72.8742293842933,55.8644917973244,38.7965307797171,210.560859153346,36.0256836728461,36.3256222001404,35.8307208503244,45.2173744679075,51.0107674772106,56.989287683403,38.9721092057435,55.9599165612214,37.4140735831419,39.4000575341717,68.5293217243941,98.7366048120318,80.6912907698544,62.9160092929359,101.662586212298,35.8499169739137,46.2541150460267,60.8683639675801,56.2573256052444,28.2387096184928,48.4538686964517,125.453306656601,47.330084160418,72.1537700739181,38.7665735709585,53.1133107057416,47.7446499917735,44.0105722745713,60.1672289920041,70.7252519245765,65.9960867257761,75.8005063189965,62.2203022604829,65.355623977151,65.5753258326707,84.9751845931284,77.6328072507925,64.5753254784011,98.0641234099681,70.9960359070913,36.0919282106976,39.0032547227695,80.8445871646342,49.6092052438628,49.6861277743754,45.7206366655566,57.7360656426405,76.7053325227976,63.0508566358374,40.1311417825122,59.4684847549781,108.39733764865,96.1316587794396,82.0611045268175,53.7146614369269,70.6607119795956,84.1642092073173,73.2735241522937,68.4061500524241,55.261044341174,55.7295667124891,81.2903136366584,98.0577397368534,34.7431151944038,28.666168169323,48.6571128320397,70.9626189038207,69.1274634649468,84.8131776716142,48.2515192224361,52.191649410219,84.0280017992311,59.4206237193748,62.2715926255083,131.049940036881,97.2465766355446,81.2460418748721,52.8369952483357,87.5154952944092,78.9000013419286,49.3833161179599,61.5322287602303,70.9386406775894,53.5922115223801,52.5772128578942,42.26557275834,44.1810498188324,78.1006358412583,68.1319875880711,95.0440392846074,97.8475583559004,49.4052820401968,102.387983895379,68.6516204951726,61.0109946928039,59.0559082583979,86.7743592062515,33.9277536052664,53.234784221526,85.7023481634949,30.5035914896736,25.419659574728,24.659714041056,97.6528128223511,59.5497367202141,52.3264809177235,90.2601143216538,163.804269427789,94.8355363199599,110.562024827937,138.675017739378,182.215608506201,60.5293690804909,58.6465086536946,74.6318936653433,77.3709402257156,111.674225106455,102.05083030239,36.4428553386994,47.098897125842,78.6235865047473,64.8795908732945,61.6019941953506,93.4172975312329,59.0273750381726,57.2175813259143,62.5991135618394,88.0500603491153,65.6445759775596,63.3267674851438,51.6210073287599,65.6436555261993,64.6964923522024,63.9126503218092,74.0687560414977,76.6158696604727|short_description=p1@CNOT1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=23019 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7877 | |||
|TSSclassifier=S | |||
|UniProt=A5YKK6,F8WA87,B3KPW6 | |||
|association_with_transcript=0bp_to_ENST00000317147,ENST00000394200,ENST00000422872,ENST00000441024,NM_016284,NM_206999,uc002enu.3,uc002env.2,uc002enw.2,uc002enx.2,uc002enz.1_5end | |||
|description=CAGE_peak_1_at_CNOT1_5end | |||
|id=chr16:58663720..58663753,- | |||
|ontology_enrichment_celltype=CL:0000037!9.91e-44!172;CL:0000566!9.91e-44!172;CL:0002032!1.16e-41!165;CL:0000837!1.16e-41!165;CL:0000988!2.90e-38!182;CL:0000738!2.76e-37!140;CL:0002031!1.41e-32!124;CL:0002087!5.11e-32!119;CL:0000763!1.41e-26!112;CL:0000049!1.41e-26!112;CL:0000766!5.42e-20!76;CL:0000557!3.84e-19!71;CL:0000839!1.68e-18!70;CL:0002009!7.82e-18!65;CL:0002194!2.82e-17!63;CL:0000576!2.82e-17!63;CL:0000040!2.82e-17!63;CL:0000559!2.82e-17!63;CL:0000860!3.48e-15!45;CL:0002057!4.39e-14!42;CL:0000542!2.06e-13!53;CL:0000051!2.06e-13!53;CL:0000838!3.70e-13!52;CL:0000945!6.50e-07!24;CL:0000826!6.50e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.27e-13;33!CL:0002057;1.27e-13;33!CL:0000473;7.71e-12;39!CL:0000234;7.71e-12;39!CL:0000576;3.49e-11;48!CL:0002087;1.13e-10;104!CL:0000738;1.17e-08;136!CL:0000766;1.65e-08;69!CL:0000763;2.61e-08;100!CL:0000988;6.86e-08;177!CL:0000542;7.03e-08;53!CL:0000945;6.50e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,7.14e-43,168;CL:0002032,8.00e-41,161;CL:0000837,8.00e-41,161;CL:0000988,2.85e-38,177;CL:0000738,1.64e-36,136;CL:0002031,7.64e-32,120;CL:0002087,2.68e-31,115;CL:0000763,7.25e-26,108;CL:0000049,7.25e-26,108;CL:0000766,2.30e-19,72;CL:0000557,1.58e-18,67;CL:0000839,6.92e-18,66;CL:0002009,3.11e-17,61;CL:0002194,1.11e-16,59;CL:0000576,1.11e-16,59;CL:0000040,1.11e-16,59;CL:0000559,1.11e-16,59;CL:0000473,1.42e-14,48;CL:0000234,1.42e-14,48;CL:0000860,4.39e-14,42;CL:0002057,4.39e-14,42;CL:0000542,2.06e-13,53;CL:0000051,2.06e-13,53;CL:0000838,3.70e-13,52;CL:0000945,6.50e-07,24;CL:0000826,6.50e-07,24 | |||
|ontology_enrichment_development_v019=CL:0002057;1.30e-10;42!CL:0000051;7.03e-08;53!CL:0000049;7.54e-08;108 | |||
|ontology_enrichment_disease=DOID:162!2.53e-13!235;DOID:14566!3.39e-12!239;DOID:0050687!2.43e-09!143;DOID:2531!6.78e-09!51;DOID:0060083!6.78e-09!51;DOID:1240!1.51e-08!39;DOID:305!1.67e-08!106;DOID:0050686!5.05e-08!137 | |||
|ontology_enrichment_disease_v019=DOID:1240;3.25e-07;39 | |||
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|short_description=p1@CNOT1 | |||
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Revision as of 10:59, 11 September 2013
Short description: | p1@CNOT1 |
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Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_CNOT1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000317147, ENST00000394200, ENST00000422872, ENST00000441024, NM_016284, NM_206999, uc002enu.3, uc002env.2, uc002enw.2, uc002enx.2, uc002enz.1_5end |
EntrezGene: | CNOT1 |
HGNC: | 7877 |
UniProt: | A5YKK6F8WA87B3KPW6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 7.14e-43 | 168 |
hematopoietic oligopotent progenitor cell | 8.00e-41 | 161 |
hematopoietic multipotent progenitor cell | 8.00e-41 | 161 |
hematopoietic cell | 2.85e-38 | 177 |
leukocyte | 1.64e-36 | 136 |
hematopoietic lineage restricted progenitor cell | 7.64e-32 | 120 |
nongranular leukocyte | 2.68e-31 | 115 |
myeloid cell | 7.25e-26 | 108 |
common myeloid progenitor | 7.25e-26 | 108 |
myeloid leukocyte | 2.30e-19 | 72 |
granulocyte monocyte progenitor cell | 1.58e-18 | 67 |
myeloid lineage restricted progenitor cell | 6.92e-18 | 66 |
macrophage dendritic cell progenitor | 3.11e-17 | 61 |
monopoietic cell | 1.11e-16 | 59 |
monocyte | 1.11e-16 | 59 |
monoblast | 1.11e-16 | 59 |
promonocyte | 1.11e-16 | 59 |
defensive cell | 1.42e-14 | 48 |
phagocyte | 1.42e-14 | 48 |
classical monocyte | 4.39e-14 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.39e-14 | 42 |
lymphocyte | 2.06e-13 | 53 |
common lymphoid progenitor | 2.06e-13 | 53 |
lymphoid lineage restricted progenitor cell | 3.70e-13 | 52 |
lymphocyte of B lineage | 6.50e-07 | 24 |
pro-B cell | 6.50e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.71e-17 | 98 |
blood island | 2.71e-17 | 98 |
hemolymphoid system | 2.02e-14 | 108 |
bone marrow | 3.44e-13 | 76 |
bone element | 1.28e-12 | 82 |
immune system | 1.78e-12 | 93 |
skeletal element | 5.86e-10 | 90 |
skeletal system | 7.14e-08 | 100 |
Ontology term | p-value | n |
---|---|---|
cancer | 2.53e-13 | 235 |
disease of cellular proliferation | 3.39e-12 | 239 |
cell type cancer | 2.43e-09 | 143 |
hematologic cancer | 6.78e-09 | 51 |
immune system cancer | 6.78e-09 | 51 |
leukemia | 1.51e-08 | 39 |
carcinoma | 1.67e-08 | 106 |
organ system cancer | 5.05e-08 | 137 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.