FFCP PHASE1:Hg19::chr16:55519569..55519597,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C351|description=CAGE_peak_at_chr16:55519569..55519597,+|id=chr16:55519569..55519597,+|ontology_enrichment_celltype=CL:0000055!3.32e-40!180;CL:0000057!9.07e-24!75;CL:0000680!1.03e-16!57;CL:0000056!1.03e-16!57;CL:0000355!1.03e-16!57;CL:0000183!9.79e-16!59;CL:0000187!3.43e-15!54;CL:0000192!3.31e-14!42;CL:0000514!3.31e-14!42;CL:0000393!2.65e-13!60;CL:0000211!2.65e-13!60;CL:0000048!5.94e-11!430;CL:0000359!2.13e-10!32;CL:0000723!4.68e-10!436;CL:0002620!5.34e-10!23;CL:0002371!8.17e-10!591;CL:0000034!2.24e-09!444;CL:0002334!4.79e-09!12;CL:0000144!1.69e-08!625;CL:0000222!3.35e-08!119|ontology_enrichment_celltype_v019=CL:0002334;9.42e-13;12!CL:0002620;1.80e-11;23!CL:0000057;8.21e-09;73!CL:0000134;1.35e-07;55!CL:0002320;2.00e-07;188!CL:0000192;3.24e-07;43!CL:0000359;4.75e-07;32|ontology_enrichment_celltype_v019_2=CL:0000057,2.23e-23,76;CL:0000048,1.13e-17,427;CL:0000723,6.66e-17,433;CL:0000034,6.52e-16,441;CL:0002334,3.87e-13,12;CL:0002620,2.26e-11,23;CL:0000680,2.22e-10,58;CL:0000056,2.22e-10,58;CL:0000355,2.22e-10,58;CL:0000192,1.23e-09,43;CL:0000514,1.23e-09,43;CL:0002320,1.37e-09,361;CL:0000134,1.94e-09,354;CL:0000187,1.07e-08,55;CL:0000393,9.72e-08,61;CL:0000211,9.72e-08,61;CL:0000219,2.00e-07,386;CL:0000136,2.06e-07,15;CL:0000359,4.73e-07,32|ontology_enrichment_development_v019=CL:0000514;3.24e-07;43|ontology_enrichment_disease=DOID:2394!6.73e-08!14|ontology_enrichment_disease_v019=DOID:2394;1.67e-10;14|ontology_enrichment_disease_v019_2=DOID:2394,1.42e-10,14|ontology_enrichment_uberon=UBERON:0004290!2.20e-17!70;UBERON:0002385!8.13e-17!63;UBERON:0001015!8.13e-17!63;UBERON:0000383!8.13e-17!63;UBERON:0000914!9.08e-17!83;UBERON:0002329!9.08e-17!83;UBERON:0003077!9.08e-17!83;UBERON:0003059!9.08e-17!83;UBERON:0007282!9.08e-17!83;UBERON:0009618!9.08e-17!83;UBERON:0007285!9.08e-17!83;UBERON:0001134!1.12e-16!61;UBERON:0002036!1.12e-16!61;UBERON:0003082!1.12e-16!61;UBERON:0000486!8.43e-16!82;UBERON:0005256!1.86e-14!143;UBERON:0001637!2.42e-13!42;UBERON:0003509!2.42e-13!42;UBERON:0004572!2.42e-13!42;UBERON:0004573!6.76e-13!33;UBERON:0004571!6.76e-13!33;UBERON:0004872!2.83e-12!84;UBERON:0001981!1.43e-11!60;UBERON:0007500!1.43e-11!60;UBERON:0004537!1.43e-11!60;UBERON:0006965!1.43e-11!60;UBERON:0002100!1.35e-10!216;UBERON:0003914!1.66e-10!118;UBERON:0000055!1.26e-09!69;UBERON:0002049!1.61e-09!79;UBERON:0007798!1.61e-09!79;UBERON:0000490!2.18e-09!138;UBERON:0000947!2.83e-09!21;UBERON:0010191!2.83e-09!21;UBERON:0001009!1.31e-07!113;UBERON:0001135!1.44e-07!15;UBERON:0004535!1.45e-07!110;UBERON:0002199!2.13e-07!45;UBERON:0002416!2.13e-07!45;UBERON:0000475!6.17e-07!365;UBERON:0003102!8.68e-07!95|ontology_enrichment_uberon_v019=UBERON:0004573;5.10e-12;33!UBERON:0004571;5.10e-12;33!UBERON:0001637;2.03e-09;42!UBERON:0003509;2.03e-09;42!UBERON:0004572;2.03e-09;42!UBERON:0004457;2.67e-09;9!UBERON:0000042;2.67e-09;9!UBERON:0000947;9.51e-09;21!UBERON:0010191;9.51e-09;21!UBERON:0002384;1.86e-08;198!UBERON:0003688;2.19e-08;6!UBERON:0002358;2.19e-08;6!UBERON:0003684;2.19e-08;6!UBERON:0001178;2.19e-08;6!UBERON:0002199;6.04e-07;46!UBERON:0002416;6.04e-07;46!UBERON:0001013;7.70e-07;14|ontology_enrichment_uberon_v019_2=UBERON:0004573,4.25e-13,33;UBERON:0004571,4.25e-13,33;UBERON:0001637,1.02e-11,42;UBERON:0003509,1.02e-11,42;UBERON:0004572,1.02e-11,42;UBERON:0007524,4.44e-10,73;UBERON:0001134,7.46e-10,62;UBERON:0002036,7.46e-10,62;UBERON:0003082,7.46e-10,62;UBERON:0002384,7.66e-10,371;UBERON:0000486,9.06e-10,83;UBERON:0002329,9.87e-10,71;UBERON:0003059,9.87e-10,71;UBERON:0007282,9.87e-10,71;UBERON:0004290,9.87e-10,71;UBERON:0009618,9.87e-10,71;UBERON:0002199,1.30e-09,46;UBERON:0002416,1.30e-09,46;UBERON:0003077,1.83e-09,72;UBERON:0007285,1.83e-09,72;UBERON:0002385,2.86e-09,64;UBERON:0001015,2.86e-09,64;UBERON:0000383,2.86e-09,64;UBERON:0004872,5.77e-09,83;UBERON:0007500,6.05e-09,59;UBERON:0001981,6.05e-09,59;UBERON:0004537,6.05e-09,59;UBERON:0006965,6.05e-09,59;UBERON:0000947,6.94e-09,21;UBERON:0010191,6.94e-09,21;UBERON:0000926,1.08e-08,315;UBERON:0004120,1.08e-08,315;UBERON:0006603,1.08e-08,315;UBERON:0007503,1.34e-08,78;UBERON:0003102,1.47e-08,99;UBERON:0003688,2.26e-08,6;UBERON:0002358,2.26e-08,6;UBERON:0003684,2.26e-08,6;UBERON:0001178,2.26e-08,6;UBERON:0005256,9.97e-08,122;UBERON:0002097,1.82e-07,41;UBERON:0001013,7.22e-07,14;UBERON:0000055,9.86e-07,68|phase1_expression=4.54195948176392,10.7050261945492,2.53717927372748,5.00366491765652,8.49226079411847,2.61701557230111,0,3.79031924056099,3.91778442299758,0.245733936501509,0,0.218441372130172,0.527533956456907,0.37129905888014,0,8.74022690387308,4.82155622419182,3.65155045193687,6.34312638427659,1.23121058076788,0.612002073732759,1.88072832886853,0.286235987131057,0.273748850145768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C351 | |||
|description=CAGE_peak_at_chr16:55519569..55519597,+ | |||
|id=chr16:55519569..55519597,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.32e-40!180;CL:0000057!9.07e-24!75;CL:0000680!1.03e-16!57;CL:0000056!1.03e-16!57;CL:0000355!1.03e-16!57;CL:0000183!9.79e-16!59;CL:0000187!3.43e-15!54;CL:0000192!3.31e-14!42;CL:0000514!3.31e-14!42;CL:0000393!2.65e-13!60;CL:0000211!2.65e-13!60;CL:0000048!5.94e-11!430;CL:0000359!2.13e-10!32;CL:0000723!4.68e-10!436;CL:0002620!5.34e-10!23;CL:0002371!8.17e-10!591;CL:0000034!2.24e-09!444;CL:0002334!4.79e-09!12;CL:0000144!1.69e-08!625;CL:0000222!3.35e-08!119 | |||
|ontology_enrichment_celltype_v019=CL:0002334;9.42e-13;12!CL:0002620;1.80e-11;23!CL:0000057;8.21e-09;73!CL:0000134;1.35e-07;55!CL:0002320;2.00e-07;188!CL:0000192;3.24e-07;43!CL:0000359;4.75e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.23e-23,76;CL:0000048,1.13e-17,427;CL:0000723,6.66e-17,433;CL:0000034,6.52e-16,441;CL:0002334,3.87e-13,12;CL:0002620,2.26e-11,23;CL:0000680,2.22e-10,58;CL:0000056,2.22e-10,58;CL:0000355,2.22e-10,58;CL:0000192,1.23e-09,43;CL:0000514,1.23e-09,43;CL:0002320,1.37e-09,361;CL:0000134,1.94e-09,354;CL:0000187,1.07e-08,55;CL:0000393,9.72e-08,61;CL:0000211,9.72e-08,61;CL:0000219,2.00e-07,386;CL:0000136,2.06e-07,15;CL:0000359,4.73e-07,32 | |||
|ontology_enrichment_development_v019=CL:0000514;3.24e-07;43 | |||
|ontology_enrichment_disease=DOID:2394!6.73e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.67e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.42e-10,14 | |||
|ontology_enrichment_uberon=UBERON:0004290!2.20e-17!70;UBERON:0002385!8.13e-17!63;UBERON:0001015!8.13e-17!63;UBERON:0000383!8.13e-17!63;UBERON:0000914!9.08e-17!83;UBERON:0002329!9.08e-17!83;UBERON:0003077!9.08e-17!83;UBERON:0003059!9.08e-17!83;UBERON:0007282!9.08e-17!83;UBERON:0009618!9.08e-17!83;UBERON:0007285!9.08e-17!83;UBERON:0001134!1.12e-16!61;UBERON:0002036!1.12e-16!61;UBERON:0003082!1.12e-16!61;UBERON:0000486!8.43e-16!82;UBERON:0005256!1.86e-14!143;UBERON:0001637!2.42e-13!42;UBERON:0003509!2.42e-13!42;UBERON:0004572!2.42e-13!42;UBERON:0004573!6.76e-13!33;UBERON:0004571!6.76e-13!33;UBERON:0004872!2.83e-12!84;UBERON:0001981!1.43e-11!60;UBERON:0007500!1.43e-11!60;UBERON:0004537!1.43e-11!60;UBERON:0006965!1.43e-11!60;UBERON:0002100!1.35e-10!216;UBERON:0003914!1.66e-10!118;UBERON:0000055!1.26e-09!69;UBERON:0002049!1.61e-09!79;UBERON:0007798!1.61e-09!79;UBERON:0000490!2.18e-09!138;UBERON:0000947!2.83e-09!21;UBERON:0010191!2.83e-09!21;UBERON:0001009!1.31e-07!113;UBERON:0001135!1.44e-07!15;UBERON:0004535!1.45e-07!110;UBERON:0002199!2.13e-07!45;UBERON:0002416!2.13e-07!45;UBERON:0000475!6.17e-07!365;UBERON:0003102!8.68e-07!95 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;5.10e-12;33!UBERON:0004571;5.10e-12;33!UBERON:0001637;2.03e-09;42!UBERON:0003509;2.03e-09;42!UBERON:0004572;2.03e-09;42!UBERON:0004457;2.67e-09;9!UBERON:0000042;2.67e-09;9!UBERON:0000947;9.51e-09;21!UBERON:0010191;9.51e-09;21!UBERON:0002384;1.86e-08;198!UBERON:0003688;2.19e-08;6!UBERON:0002358;2.19e-08;6!UBERON:0003684;2.19e-08;6!UBERON:0001178;2.19e-08;6!UBERON:0002199;6.04e-07;46!UBERON:0002416;6.04e-07;46!UBERON:0001013;7.70e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004573,4.25e-13,33;UBERON:0004571,4.25e-13,33;UBERON:0001637,1.02e-11,42;UBERON:0003509,1.02e-11,42;UBERON:0004572,1.02e-11,42;UBERON:0007524,4.44e-10,73;UBERON:0001134,7.46e-10,62;UBERON:0002036,7.46e-10,62;UBERON:0003082,7.46e-10,62;UBERON:0002384,7.66e-10,371;UBERON:0000486,9.06e-10,83;UBERON:0002329,9.87e-10,71;UBERON:0003059,9.87e-10,71;UBERON:0007282,9.87e-10,71;UBERON:0004290,9.87e-10,71;UBERON:0009618,9.87e-10,71;UBERON:0002199,1.30e-09,46;UBERON:0002416,1.30e-09,46;UBERON:0003077,1.83e-09,72;UBERON:0007285,1.83e-09,72;UBERON:0002385,2.86e-09,64;UBERON:0001015,2.86e-09,64;UBERON:0000383,2.86e-09,64;UBERON:0004872,5.77e-09,83;UBERON:0007500,6.05e-09,59;UBERON:0001981,6.05e-09,59;UBERON:0004537,6.05e-09,59;UBERON:0006965,6.05e-09,59;UBERON:0000947,6.94e-09,21;UBERON:0010191,6.94e-09,21;UBERON:0000926,1.08e-08,315;UBERON:0004120,1.08e-08,315;UBERON:0006603,1.08e-08,315;UBERON:0007503,1.34e-08,78;UBERON:0003102,1.47e-08,99;UBERON:0003688,2.26e-08,6;UBERON:0002358,2.26e-08,6;UBERON:0003684,2.26e-08,6;UBERON:0001178,2.26e-08,6;UBERON:0005256,9.97e-08,122;UBERON:0002097,1.82e-07,41;UBERON:0001013,7.22e-07,14;UBERON:0000055,9.86e-07,68 | |||
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| |||
|short_description=p@chr16:55519569..55519597,+ | |||
}} |
Revision as of 10:44, 11 September 2013
Short description: | p@chr16:55519569..55519597, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr16:55519569..55519597, + |
Coexpression cluster: | C351_Fibroblast_Smooth_mesenchymal_Adipocyte_tenocyte_Synoviocyte_Hair |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.23e-23 | 76 |
multi fate stem cell | 1.13e-17 | 427 |
somatic stem cell | 6.66e-17 | 433 |
stem cell | 6.52e-16 | 441 |
preadipocyte | 3.87e-13 | 12 |
skin fibroblast | 2.26e-11 | 23 |
muscle precursor cell | 2.22e-10 | 58 |
myoblast | 2.22e-10 | 58 |
multi-potent skeletal muscle stem cell | 2.22e-10 | 58 |
smooth muscle cell | 1.23e-09 | 43 |
smooth muscle myoblast | 1.23e-09 | 43 |
connective tissue cell | 1.37e-09 | 361 |
mesenchymal cell | 1.94e-09 | 354 |
muscle cell | 1.07e-08 | 55 |
electrically responsive cell | 9.72e-08 | 61 |
electrically active cell | 9.72e-08 | 61 |
motile cell | 2.00e-07 | 386 |
fat cell | 2.06e-07 | 15 |
vascular associated smooth muscle cell | 4.73e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.42e-10 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.