FFCP PHASE1:Hg19::chr15:74422736..74422764,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=57611|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=29286|TSSclassifier=S|UniProt=Q6UXK2|association_with_transcript=0bp_to_ENST00000453268,NM_020851,uc010bjf.2_5end|coexpression_cluster_id=C10|description=CAGE_peak_3_at_ISLR2_5end|id=chr15:74422736..74422764,+|ontology_enrichment_celltype=CL:0000047!8.91e-10!8;CL:0000133!2.13e-09!59;CL:0002319!3.79e-09!25;CL:0000242!2.32e-07!2;CL:0000221!3.33e-07!71|ontology_enrichment_celltype_v019=CL:0000123;1.31e-18;2!CL:0000242;1.31e-18;2!CL:0000047;1.63e-18;2!CL:0002319;2.88e-15;25!CL:0000540;6.27e-14;6!CL:0000404;6.27e-14;6!CL:0000312;5.49e-08;5!CL:0000333;9.71e-08;5!CL:0000240;8.64e-07;6!CL:0000311;8.64e-07;6!CL:0000079;8.64e-07;6!CL:0000237;8.64e-07;6|ontology_enrichment_celltype_v019_2=CL:0000047,1.85e-27,8;CL:0000242,1.31e-18,2;CL:0002319,2.88e-15,25;CL:0000540,6.14e-14,6;CL:0000031,6.14e-14,6;CL:0000404,6.14e-14,6;CL:0000133,2.49e-10,59;CL:0000221,2.74e-08,72;CL:0000312,5.49e-08,5;CL:0000240,8.64e-07,6;CL:0000311,8.64e-07,6;CL:0000079,8.64e-07,6;CL:0000237,8.64e-07,6;CL:0000036,8.64e-07,6;CL:0000357,8.64e-07,6;CL:0000114,8.64e-07,6|ontology_enrichment_development_v019=CL:0000031;6.27e-14;6!CL:0000357;8.64e-07;6!CL:0000114;8.64e-07;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:171;2.87e-08;10|ontology_enrichment_disease_v019_2=DOID:171,2.66e-08,10|ontology_enrichment_uberon=UBERON:0001869!4.55e-40!32;UBERON:0000073!1.89e-39!94;UBERON:0001016!1.89e-39!94;UBERON:0002780!3.86e-39!41;UBERON:0001890!3.86e-39!41;UBERON:0006240!3.86e-39!41;UBERON:0003080!4.67e-38!42;UBERON:0005743!1.90e-37!86;UBERON:0001893!2.10e-37!34;UBERON:0001017!2.16e-37!82;UBERON:0002791!4.23e-35!33;UBERON:0002020!6.41e-34!34;UBERON:0003528!6.41e-34!34;UBERON:0002616!5.89e-32!59;UBERON:0001950!1.10e-31!20;UBERON:0001049!5.74e-31!57;UBERON:0005068!5.74e-31!57;UBERON:0006241!5.74e-31!57;UBERON:0007135!5.74e-31!57;UBERON:0003056!7.66e-31!61;UBERON:0000955!2.93e-30!69;UBERON:0006238!2.93e-30!69;UBERON:0002619!1.50e-28!22;UBERON:0000956!5.71e-28!25;UBERON:0000203!5.71e-28!25;UBERON:0002346!5.69e-27!90;UBERON:0003075!1.37e-26!86;UBERON:0007284!1.37e-26!86;UBERON:0000924!9.77e-26!173;UBERON:0006601!9.77e-26!173;UBERON:0004121!3.92e-25!169;UBERON:0000033!7.69e-20!123;UBERON:0000153!9.92e-20!129;UBERON:0007811!9.92e-20!129;UBERON:0007023!8.66e-14!115;UBERON:0001871!1.54e-12!7;UBERON:0000200!7.47e-12!6;UBERON:0000369!9.31e-12!4;UBERON:0002435!9.31e-12!4;UBERON:0000204!9.31e-12!4;UBERON:0010082!9.31e-12!4;UBERON:0002420!1.48e-10!9;UBERON:0007245!1.48e-10!9;UBERON:0010009!1.48e-10!9;UBERON:0010011!1.48e-10!9;UBERON:0000454!1.48e-10!9;UBERON:0009663!8.07e-10!7;UBERON:0001872!1.22e-09!5;UBERON:0002021!1.34e-09!5;UBERON:0005383!4.10e-09!3;UBERON:0005382!4.10e-09!3;UBERON:0002771!4.59e-09!3;UBERON:0000064!6.58e-08!219;UBERON:0000025!7.52e-08!194;UBERON:0002308!1.48e-07!9;UBERON:0000125!1.48e-07!9;UBERON:0001873!6.01e-07!2;UBERON:0010122!6.01e-07!2|ontology_enrichment_uberon_v019=UBERON:0001950;1.67e-19;20!UBERON:0002619;9.49e-18;22!UBERON:0000956;1.28e-15;25!UBERON:0000203;1.28e-15;25!UBERON:0002791;1.75e-11;32!UBERON:0001869;7.41e-11;32!UBERON:0002022;8.99e-10;1!UBERON:0001893;1.62e-09;34!UBERON:0003528;1.99e-09;34!UBERON:0002020;1.99e-09;34!UBERON:0002780;2.23e-08;41!UBERON:0001890;2.23e-08;41!UBERON:0002021;6.42e-08;5!UBERON:0001872;6.77e-08;5!UBERON:0000013;9.71e-08;5!UBERON:0002410;9.71e-08;5!UBERON:0000922;1.79e-07;49|ontology_enrichment_uberon_v019_2=UBERON:0001950,1.79e-19,20;UBERON:0001016,9.73e-19,89;UBERON:0002619,1.01e-17,22;UBERON:0000956,1.35e-15,25;UBERON:0000203,1.35e-15,25;UBERON:0001017,1.35e-15,81;UBERON:0004121,5.75e-15,171;UBERON:0000924,5.75e-15,171;UBERON:0006601,5.75e-15,171;UBERON:0002791,3.90e-12,32;UBERON:0001869,3.90e-12,32;UBERON:0003528,2.12e-11,34;UBERON:0002020,2.12e-11,34;UBERON:0001893,2.12e-11,34;UBERON:0002022,6.91e-10,1;UBERON:0002780,2.24e-09,41;UBERON:0001890,2.24e-09,41;UBERON:0003080,2.24e-09,41;UBERON:0006240,2.24e-09,41;UBERON:0011216,3.27e-08,223;UBERON:0002021,6.54e-08,5;UBERON:0003056,6.73e-08,61;UBERON:0001872,7.51e-08,5;UBERON:0000013,8.91e-08,5;UBERON:0002410,8.91e-08,5;UBERON:0000073,4.00e-07,53;UBERON:0002616,4.00e-07,53;UBERON:0000955,6.05e-07,68;UBERON:0006238,6.05e-07,68;UBERON:0002346,9.25e-07,86|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369363174230364,0,0.313454721478088,0,0.273748850145768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232387885739037,0.414644220061482,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=57611 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29286 | |||
|TSSclassifier=S | |||
|UniProt=Q6UXK2 | |||
|association_with_transcript=0bp_to_ENST00000453268,NM_020851,uc010bjf.2_5end | |||
|coexpression_cluster_id=C10 | |||
|description=CAGE_peak_3_at_ISLR2_5end | |||
|id=chr15:74422736..74422764,+ | |||
|ontology_enrichment_celltype=CL:0000047!8.91e-10!8;CL:0000133!2.13e-09!59;CL:0002319!3.79e-09!25;CL:0000242!2.32e-07!2;CL:0000221!3.33e-07!71 | |||
|ontology_enrichment_celltype_v019=CL:0000123;1.31e-18;2!CL:0000242;1.31e-18;2!CL:0000047;1.63e-18;2!CL:0002319;2.88e-15;25!CL:0000540;6.27e-14;6!CL:0000404;6.27e-14;6!CL:0000312;5.49e-08;5!CL:0000333;9.71e-08;5!CL:0000240;8.64e-07;6!CL:0000311;8.64e-07;6!CL:0000079;8.64e-07;6!CL:0000237;8.64e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,1.85e-27,8;CL:0000242,1.31e-18,2;CL:0002319,2.88e-15,25;CL:0000540,6.14e-14,6;CL:0000031,6.14e-14,6;CL:0000404,6.14e-14,6;CL:0000133,2.49e-10,59;CL:0000221,2.74e-08,72;CL:0000312,5.49e-08,5;CL:0000240,8.64e-07,6;CL:0000311,8.64e-07,6;CL:0000079,8.64e-07,6;CL:0000237,8.64e-07,6;CL:0000036,8.64e-07,6;CL:0000357,8.64e-07,6;CL:0000114,8.64e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000031;6.27e-14;6!CL:0000357;8.64e-07;6!CL:0000114;8.64e-07;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:171;2.87e-08;10 | |||
|ontology_enrichment_disease_v019_2=DOID:171,2.66e-08,10 | |||
|ontology_enrichment_uberon=UBERON:0001869!4.55e-40!32;UBERON:0000073!1.89e-39!94;UBERON:0001016!1.89e-39!94;UBERON:0002780!3.86e-39!41;UBERON:0001890!3.86e-39!41;UBERON:0006240!3.86e-39!41;UBERON:0003080!4.67e-38!42;UBERON:0005743!1.90e-37!86;UBERON:0001893!2.10e-37!34;UBERON:0001017!2.16e-37!82;UBERON:0002791!4.23e-35!33;UBERON:0002020!6.41e-34!34;UBERON:0003528!6.41e-34!34;UBERON:0002616!5.89e-32!59;UBERON:0001950!1.10e-31!20;UBERON:0001049!5.74e-31!57;UBERON:0005068!5.74e-31!57;UBERON:0006241!5.74e-31!57;UBERON:0007135!5.74e-31!57;UBERON:0003056!7.66e-31!61;UBERON:0000955!2.93e-30!69;UBERON:0006238!2.93e-30!69;UBERON:0002619!1.50e-28!22;UBERON:0000956!5.71e-28!25;UBERON:0000203!5.71e-28!25;UBERON:0002346!5.69e-27!90;UBERON:0003075!1.37e-26!86;UBERON:0007284!1.37e-26!86;UBERON:0000924!9.77e-26!173;UBERON:0006601!9.77e-26!173;UBERON:0004121!3.92e-25!169;UBERON:0000033!7.69e-20!123;UBERON:0000153!9.92e-20!129;UBERON:0007811!9.92e-20!129;UBERON:0007023!8.66e-14!115;UBERON:0001871!1.54e-12!7;UBERON:0000200!7.47e-12!6;UBERON:0000369!9.31e-12!4;UBERON:0002435!9.31e-12!4;UBERON:0000204!9.31e-12!4;UBERON:0010082!9.31e-12!4;UBERON:0002420!1.48e-10!9;UBERON:0007245!1.48e-10!9;UBERON:0010009!1.48e-10!9;UBERON:0010011!1.48e-10!9;UBERON:0000454!1.48e-10!9;UBERON:0009663!8.07e-10!7;UBERON:0001872!1.22e-09!5;UBERON:0002021!1.34e-09!5;UBERON:0005383!4.10e-09!3;UBERON:0005382!4.10e-09!3;UBERON:0002771!4.59e-09!3;UBERON:0000064!6.58e-08!219;UBERON:0000025!7.52e-08!194;UBERON:0002308!1.48e-07!9;UBERON:0000125!1.48e-07!9;UBERON:0001873!6.01e-07!2;UBERON:0010122!6.01e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;1.67e-19;20!UBERON:0002619;9.49e-18;22!UBERON:0000956;1.28e-15;25!UBERON:0000203;1.28e-15;25!UBERON:0002791;1.75e-11;32!UBERON:0001869;7.41e-11;32!UBERON:0002022;8.99e-10;1!UBERON:0001893;1.62e-09;34!UBERON:0003528;1.99e-09;34!UBERON:0002020;1.99e-09;34!UBERON:0002780;2.23e-08;41!UBERON:0001890;2.23e-08;41!UBERON:0002021;6.42e-08;5!UBERON:0001872;6.77e-08;5!UBERON:0000013;9.71e-08;5!UBERON:0002410;9.71e-08;5!UBERON:0000922;1.79e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,1.79e-19,20;UBERON:0001016,9.73e-19,89;UBERON:0002619,1.01e-17,22;UBERON:0000956,1.35e-15,25;UBERON:0000203,1.35e-15,25;UBERON:0001017,1.35e-15,81;UBERON:0004121,5.75e-15,171;UBERON:0000924,5.75e-15,171;UBERON:0006601,5.75e-15,171;UBERON:0002791,3.90e-12,32;UBERON:0001869,3.90e-12,32;UBERON:0003528,2.12e-11,34;UBERON:0002020,2.12e-11,34;UBERON:0001893,2.12e-11,34;UBERON:0002022,6.91e-10,1;UBERON:0002780,2.24e-09,41;UBERON:0001890,2.24e-09,41;UBERON:0003080,2.24e-09,41;UBERON:0006240,2.24e-09,41;UBERON:0011216,3.27e-08,223;UBERON:0002021,6.54e-08,5;UBERON:0003056,6.73e-08,61;UBERON:0001872,7.51e-08,5;UBERON:0000013,8.91e-08,5;UBERON:0002410,8.91e-08,5;UBERON:0000073,4.00e-07,53;UBERON:0002616,4.00e-07,53;UBERON:0000955,6.05e-07,68;UBERON:0006238,6.05e-07,68;UBERON:0002346,9.25e-07,86 | |||
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|short_description=p3@ISLR2 | |||
}} |
Revision as of 08:12, 11 September 2013
Short description: | p3@ISLR2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_ISLR2_5end |
Coexpression cluster: | C10_occipital_temporal_parietal_brain_duodenum_Neurons_Neural |
Association with transcript: | 0bp_to_ENST00000453268, NM_020851, uc010bjf.2_5end |
EntrezGene: | ISLR2 |
HGNC: | 29286 |
UniProt: | Q6UXK2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 1.85e-27 | 8 |
Merkel cell | 1.31e-18 | 2 |
neural cell | 2.88e-15 | 25 |
neuron | 6.14e-14 | 6 |
neuroblast | 6.14e-14 | 6 |
electrically signaling cell | 6.14e-14 | 6 |
neurectodermal cell | 2.49e-10 | 59 |
ectodermal cell | 2.74e-08 | 72 |
keratinocyte | 5.49e-08 | 5 |
stratified squamous epithelial cell | 8.64e-07 | 6 |
keratin accumulating cell | 8.64e-07 | 6 |
stratified epithelial cell | 8.64e-07 | 6 |
keratinizing barrier epithelial cell | 8.64e-07 | 6 |
epithelial fate stem cell | 8.64e-07 | 6 |
stratified epithelial stem cell | 8.64e-07 | 6 |
surface ectodermal cell | 8.64e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
neocortex | 1.79e-19 | 20 |
nervous system | 9.73e-19 | 89 |
regional part of cerebral cortex | 1.01e-17 | 22 |
cerebral cortex | 1.35e-15 | 25 |
pallium | 1.35e-15 | 25 |
central nervous system | 1.35e-15 | 81 |
ectoderm-derived structure | 5.75e-15 | 171 |
ectoderm | 5.75e-15 | 171 |
presumptive ectoderm | 5.75e-15 | 171 |
regional part of telencephalon | 3.90e-12 | 32 |
cerebral hemisphere | 3.90e-12 | 32 |
brain grey matter | 2.12e-11 | 34 |
gray matter | 2.12e-11 | 34 |
telencephalon | 2.12e-11 | 34 |
insula | 6.91e-10 | 1 |
regional part of forebrain | 2.24e-09 | 41 |
forebrain | 2.24e-09 | 41 |
anterior neural tube | 2.24e-09 | 41 |
future forebrain | 2.24e-09 | 41 |
organ system subdivision | 3.27e-08 | 223 |
occipital lobe | 6.54e-08 | 5 |
pre-chordal neural plate | 6.73e-08 | 61 |
parietal lobe | 7.51e-08 | 5 |
sympathetic nervous system | 8.91e-08 | 5 |
autonomic nervous system | 8.91e-08 | 5 |
regional part of nervous system | 4.00e-07 | 53 |
regional part of brain | 4.00e-07 | 53 |
brain | 6.05e-07 | 68 |
future brain | 6.05e-07 | 68 |
neurectoderm | 9.25e-07 | 86 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 2.66e-08 | 10 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.