FFCP PHASE1:Hg19::chr14:106331652..106331680,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding|HGNC=5532|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000390565_5end|coexpression_cluster_id=C904|description=CAGE_peak_1_at_IGHJ1_5end|id=chr14:106331652..106331680,-|ontology_enrichment_celltype=CL:0000236!2.98e-23!14;CL:0000945!6.89e-15!24;CL:0000826!6.89e-15!24;CL:0000037!2.02e-13!172;CL:0000566!2.02e-13!172;CL:0000988!3.66e-12!182;CL:0000838!3.05e-11!52;CL:0000542!5.96e-11!53;CL:0000051!5.96e-11!53;CL:0000784!9.47e-10!3;CL:0002032!6.71e-09!165;CL:0000837!6.71e-09!165;CL:0000842!2.09e-08!3;CL:0002087!9.24e-08!119;CL:0000738!3.17e-07!140|ontology_enrichment_celltype_v019=CL:0000236;5.68e-42;13!CL:0000945;1.70e-26;24!CL:0000784;3.99e-18;3!CL:0000542;1.31e-08;53!CL:0000037;1.86e-07;1!CL:0001024;1.86e-07;1!CL:0002032;4.43e-07;1!CL:0000557;4.43e-07;1|ontology_enrichment_celltype_v019_2=CL:0000236,7.34e-39,14;CL:0000945,1.86e-26,24;CL:0000826,1.86e-26,24;CL:0000784,4.23e-18,3;CL:0000037,3.48e-13,168;CL:0000988,2.83e-12,177;CL:0000838,4.10e-11,52;CL:0000542,7.24e-11,53;CL:0000051,7.24e-11,53;CL:0002032,6.35e-10,161;CL:0000837,6.35e-10,161;CL:0001024,1.86e-07,1|ontology_enrichment_development_v019=CL:0000051;1.31e-08;53!UBERON:0001045;4.43e-07;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:8692;4.32e-08;31|ontology_enrichment_disease_v019_2=DOID:8692,1.97e-08,31|ontology_enrichment_uberon=UBERON:0004177!5.64e-10!7|ontology_enrichment_uberon_v019=UBERON:0004177;8.78e-11;5!UBERON:0005057;8.78e-11;5!UBERON:0002106;1.21e-08;3!UBERON:0002405;4.32e-07;27!UBERON:0001154;4.43e-07;1!UBERON:0001153;4.43e-07;1!UBERON:0009854;4.43e-07;1!UBERON:0002372;8.67e-07;1!UBERON:0001961;8.67e-07;1!UBERON:0001744;8.67e-07;1!UBERON:0001042;8.67e-07;1!UBERON:0001735;8.67e-07;1|ontology_enrichment_uberon_v019_2=UBERON:0002106,1.34e-08,3;UBERON:0004854,1.34e-08,3;UBERON:0009034,1.34e-08,3;UBERON:0002095,1.34e-08,3;UBERON:0004782,1.34e-08,3;UBERON:0003281,1.34e-08,3;UBERON:0009664,1.34e-08,3;UBERON:0002296,1.34e-08,3;UBERON:0005602,1.34e-08,3;UBERON:0001179,1.34e-08,3;UBERON:0006293,1.34e-08,3;UBERON:0004177,8.87e-08,7;UBERON:0005057,8.87e-08,7;UBERON:0001154,4.06e-07,1;UBERON:0001153,4.06e-07,1;UBERON:0001045,4.06e-07,1;UBERON:0002372,7.29e-07,1;UBERON:0001961,7.29e-07,1;UBERON:0001744,7.29e-07,1;UBERON:0001735,7.29e-07,1|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13735385989937,14.6800219667424,0,0,0,0,0.32389366601898,0,0,0.377875943688809,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,5.27988733383968,4.36910889009705,1.77901850772711,2.13365111283254,0.800791974072025,3.4485146397269,1.98313461835459,2.86216126360609,8.53819453664173,3.52342313622563,3.05818582500183,11.8954195721123,10.0891541336676,8.69167479757754,0,0,0.205601498999509,0,0,0.473447805734733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383220493601921,0.34362744548263,0,0,0,0,0,0.127986611154418,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,7.63169997777094,6.29194401858141,2.22874500797739,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.215714200818617,0.320182673410333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411362273086194,0,0,0,0,0,0,0,0,0,0,29.1385882291912,5.36215036370627,6.56188106444037,0,0.561594356226918,93.5762184036088,0,0,65.3466262314189,1.4452926759333,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.86797481743607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,28.6136999790416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56980256395025,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,3.83239764200917,0,0.262887354279314,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.97520666736664,0,0,0,0,0,0.157204305099666,0,0.992332043623902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34167452903441,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0.548257766857182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.971421986118279,0,0,0,0,0,0,0.154348316215889,1.74847648403166,0,0,0,0,0,0,0,1.4097587696978,11.280130395376,0,0,0,0,0,0.458729283404541,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.213233981900981,0.23806443146374,0.839655827868079,1.30356900021302,0,0,0,0,0,1.81850543139386,0.286888821570705,0,0,0,0,0,0,0,0.813792356631477,0,0.402547587182052,0|short_description=p1@IGHJ1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=5532 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000390565_5end | |||
|coexpression_cluster_id=C904 | |||
|description=CAGE_peak_1_at_IGHJ1_5end | |||
|id=chr14:106331652..106331680,- | |||
|ontology_enrichment_celltype=CL:0000236!2.98e-23!14;CL:0000945!6.89e-15!24;CL:0000826!6.89e-15!24;CL:0000037!2.02e-13!172;CL:0000566!2.02e-13!172;CL:0000988!3.66e-12!182;CL:0000838!3.05e-11!52;CL:0000542!5.96e-11!53;CL:0000051!5.96e-11!53;CL:0000784!9.47e-10!3;CL:0002032!6.71e-09!165;CL:0000837!6.71e-09!165;CL:0000842!2.09e-08!3;CL:0002087!9.24e-08!119;CL:0000738!3.17e-07!140 | |||
|ontology_enrichment_celltype_v019=CL:0000236;5.68e-42;13!CL:0000945;1.70e-26;24!CL:0000784;3.99e-18;3!CL:0000542;1.31e-08;53!CL:0000037;1.86e-07;1!CL:0001024;1.86e-07;1!CL:0002032;4.43e-07;1!CL:0000557;4.43e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000236,7.34e-39,14;CL:0000945,1.86e-26,24;CL:0000826,1.86e-26,24;CL:0000784,4.23e-18,3;CL:0000037,3.48e-13,168;CL:0000988,2.83e-12,177;CL:0000838,4.10e-11,52;CL:0000542,7.24e-11,53;CL:0000051,7.24e-11,53;CL:0002032,6.35e-10,161;CL:0000837,6.35e-10,161;CL:0001024,1.86e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000051;1.31e-08;53!UBERON:0001045;4.43e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:8692;4.32e-08;31 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,1.97e-08,31 | |||
|ontology_enrichment_uberon=UBERON:0004177!5.64e-10!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0004177;8.78e-11;5!UBERON:0005057;8.78e-11;5!UBERON:0002106;1.21e-08;3!UBERON:0002405;4.32e-07;27!UBERON:0001154;4.43e-07;1!UBERON:0001153;4.43e-07;1!UBERON:0009854;4.43e-07;1!UBERON:0002372;8.67e-07;1!UBERON:0001961;8.67e-07;1!UBERON:0001744;8.67e-07;1!UBERON:0001042;8.67e-07;1!UBERON:0001735;8.67e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,1.34e-08,3;UBERON:0004854,1.34e-08,3;UBERON:0009034,1.34e-08,3;UBERON:0002095,1.34e-08,3;UBERON:0004782,1.34e-08,3;UBERON:0003281,1.34e-08,3;UBERON:0009664,1.34e-08,3;UBERON:0002296,1.34e-08,3;UBERON:0005602,1.34e-08,3;UBERON:0001179,1.34e-08,3;UBERON:0006293,1.34e-08,3;UBERON:0004177,8.87e-08,7;UBERON:0005057,8.87e-08,7;UBERON:0001154,4.06e-07,1;UBERON:0001153,4.06e-07,1;UBERON:0001045,4.06e-07,1;UBERON:0002372,7.29e-07,1;UBERON:0001961,7.29e-07,1;UBERON:0001744,7.29e-07,1;UBERON:0001735,7.29e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13735385989937,14.6800219667424,0,0,0,0,0.32389366601898,0,0,0.377875943688809,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,5.27988733383968,4.36910889009705,1.77901850772711,2.13365111283254,0.800791974072025,3.4485146397269,1.98313461835459,2.86216126360609,8.53819453664173,3.52342313622563,3.05818582500183,11.8954195721123,10.0891541336676,8.69167479757754,0,0,0.205601498999509,0,0,0.473447805734733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383220493601921,0.34362744548263,0,0,0,0,0,0.127986611154418,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,7.63169997777094,6.29194401858141,2.22874500797739,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.215714200818617,0.320182673410333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411362273086194,0,0,0,0,0,0,0,0,0,0,29.1385882291912,5.36215036370627,6.56188106444037,0,0.561594356226918,93.5762184036088,0,0,65.3466262314189,1.4452926759333,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.86797481743607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,28.6136999790416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56980256395025,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,3.83239764200917,0,0.262887354279314,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.97520666736664,0,0,0,0,0,0.157204305099666,0,0.992332043623902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34167452903441,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0.548257766857182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.971421986118279,0,0,0,0,0,0,0.154348316215889,1.74847648403166,0,0,0,0,0,0,0,1.4097587696978,11.280130395376,0,0,0,0,0,0.458729283404541,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.213233981900981,0.23806443146374,0.839655827868079,1.30356900021302,0,0,0,0,0,1.81850543139386,0.286888821570705,0,0,0,0,0,0,0,0.813792356631477,0,0.402547587182052,0 | |||
|short_description=p1@IGHJ1 | |||
}} |
Revision as of 03:36, 11 September 2013
Short description: | p1@IGHJ1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_IGHJ1_5end |
Coexpression cluster: | C904_acute_CD133_CD34_Dendritic_carcinoid_granulocyte_spleen |
Association with transcript: | 0bp_to_ENST00000390565_5end |
EntrezGene: | NA |
HGNC: | 5532 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 7.34e-39 | 14 |
lymphocyte of B lineage | 1.86e-26 | 24 |
pro-B cell | 1.86e-26 | 24 |
plasmacytoid dendritic cell | 4.23e-18 | 3 |
hematopoietic stem cell | 3.48e-13 | 168 |
hematopoietic cell | 2.83e-12 | 177 |
lymphoid lineage restricted progenitor cell | 4.10e-11 | 52 |
lymphocyte | 7.24e-11 | 53 |
common lymphoid progenitor | 7.24e-11 | 53 |
hematopoietic oligopotent progenitor cell | 6.35e-10 | 161 |
hematopoietic multipotent progenitor cell | 6.35e-10 | 161 |
CD34-positive, CD38-negative hematopoietic stem cell | 1.86e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
spleen | 1.34e-08 | 3 |
gastrointestinal system mesentery | 1.34e-08 | 3 |
stomach region | 1.34e-08 | 3 |
mesentery | 1.34e-08 | 3 |
gastrointestinal system serosa | 1.34e-08 | 3 |
mesentery of stomach | 1.34e-08 | 3 |
gut mesentery | 1.34e-08 | 3 |
dorsal mesentery | 1.34e-08 | 3 |
dorsal mesogastrium | 1.34e-08 | 3 |
peritoneal cavity | 1.34e-08 | 3 |
spleen primordium | 1.34e-08 | 3 |
hemopoietic organ | 8.87e-08 | 7 |
immune organ | 8.87e-08 | 7 |
vermiform appendix | 4.06e-07 | 1 |
caecum | 4.06e-07 | 1 |
midgut | 4.06e-07 | 1 |
tonsil | 7.29e-07 | 1 |
mucosa-associated lymphoid tissue | 7.29e-07 | 1 |
lymphoid tissue | 7.29e-07 | 1 |
tonsillar ring | 7.29e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 1.97e-08 | 31 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.