FFCP PHASE1:Hg19::chr14:106320365..106320378,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3507|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding|HGNC=5541|TSSclassifier=S|UniProt=|association_with_transcript=122bp_to_J00258_5end|coexpression_cluster_id=C282|description=CAGE_peak_7_at_IGHM_5end|id=chr14:106320365..106320378,-|ontology_enrichment_celltype=CL:0000945!1.19e-37!24;CL:0000826!1.19e-37!24;CL:0000542!1.87e-17!53;CL:0000051!1.87e-17!53;CL:0000838!1.84e-15!52;CL:0000236!3.63e-14!14;CL:0002087!1.63e-07!119|ontology_enrichment_celltype_v019=CL:0000945;1.93e-26;24!CL:0000542;1.87e-10;53|ontology_enrichment_celltype_v019_2=CL:0000945,1.90e-26,24;CL:0000826,1.90e-26,24;CL:0000542,2.67e-15,53;CL:0000051,2.67e-15,53;CL:0000838,5.96e-12,52|ontology_enrichment_development_v019=UBERON:0010115;1.72e-14;1!CL:0000051;1.87e-10;53!UBERON:0004872;1.37e-08;7|ontology_enrichment_disease=DOID:0060058!4.95e-07!10|ontology_enrichment_disease_v019=DOID:12603;4.72e-15;1!DOID:4960;1.72e-14;1!DOID:0070004;1.72e-14;1|ontology_enrichment_disease_v019_2=DOID:12603,4.73e-15,1;DOID:4960,1.84e-14,1;DOID:0070004,1.84e-14,1|ontology_enrichment_uberon=UBERON:0002106!1.21e-13!3;UBERON:0004854!1.21e-13!3;UBERON:0009034!1.21e-13!3;UBERON:0002095!1.21e-13!3;UBERON:0004782!1.21e-13!3;UBERON:0003281!1.21e-13!3;UBERON:0009664!1.21e-13!3;UBERON:0002296!1.21e-13!3;UBERON:0005602!1.21e-13!3;UBERON:0001179!1.21e-13!3;UBERON:0006293!1.21e-13!3;UBERON:0007023!2.73e-12!115;UBERON:0004177!7.94e-10!7|ontology_enrichment_uberon_v019=UBERON:0002106;8.68e-19;3!UBERON:0000029;7.63e-15;1!UBERON:0002363;1.72e-14;1!UBERON:0004177;1.15e-11;5!UBERON:0005057;1.15e-11;5!UBERON:0002405;3.58e-08;27!UBERON:0002360;6.80e-08;2!UBERON:0000094;6.80e-08;2!UBERON:0010743;6.80e-08;2|ontology_enrichment_uberon_v019_2=UBERON:0002106,1.14e-18,3;UBERON:0004854,1.14e-18,3;UBERON:0009034,1.14e-18,3;UBERON:0002095,1.14e-18,3;UBERON:0004782,1.14e-18,3;UBERON:0003281,1.14e-18,3;UBERON:0009664,1.14e-18,3;UBERON:0002296,1.14e-18,3;UBERON:0005602,1.14e-18,3;UBERON:0001179,1.14e-18,3;UBERON:0006293,1.14e-18,3;UBERON:0000029,7.13e-15,1;UBERON:0002363,3.15e-14,1;UBERON:0007645,3.15e-14,1;UBERON:0007647,3.15e-14,1;UBERON:0010115,3.15e-14,1;UBERON:0004177,1.53e-08,7;UBERON:0005057,1.53e-08,7;UBERON:0005409,1.91e-08,25;UBERON:0002360,9.19e-08,2;UBERON:0000094,9.19e-08,2;UBERON:0010743,9.19e-08,2;UBERON:0000945,1.40e-07,8;UBERON:0010039,1.40e-07,8|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.37544130346312,0.492603536699674,1.33808328233255,0,0,0,0,0,0,0.542270404062111,0.995184627411951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209658645508376,0,0,0,0,0,0,0,0.546138611262131,0,0,0,1.14950487990897,0,0,1.1384259382189,0.587237189370939,0.764546456250458,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270803863765016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.714695326373367,0,0,0,0,0,0,0,11.5197968577946,0.577076851905779,0,0,0,0.191505370132367,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.58478091468246,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23840590304675,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01098527405581,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387956065953678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0,0.414239055347196,2.97699613087171,0,3.28840015628419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20550485762571,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23658523500376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0.78624198594322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.46630900405095,0,0,0,0,0,0,0,0,3.57138888323444,1.09578409555081,0.0999411559249289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227336094654718,0.267964130156178,0,0,0.213233981900981,0,0.0645889098360061,0,0,0.0636471582781649,0,0,0,0.404112318087525,0.358611026963382,0,0,0,0,0,0,0,0,0,0.201273793591026,0|short_description=p7@IGHM}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=3507 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=5541 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=122bp_to_J00258_5end | |||
|coexpression_cluster_id=C282 | |||
|description=CAGE_peak_7_at_IGHM_5end | |||
|id=chr14:106320365..106320378,- | |||
|ontology_enrichment_celltype=CL:0000945!1.19e-37!24;CL:0000826!1.19e-37!24;CL:0000542!1.87e-17!53;CL:0000051!1.87e-17!53;CL:0000838!1.84e-15!52;CL:0000236!3.63e-14!14;CL:0002087!1.63e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000945;1.93e-26;24!CL:0000542;1.87e-10;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,1.90e-26,24;CL:0000826,1.90e-26,24;CL:0000542,2.67e-15,53;CL:0000051,2.67e-15,53;CL:0000838,5.96e-12,52 | |||
|ontology_enrichment_development_v019=UBERON:0010115;1.72e-14;1!CL:0000051;1.87e-10;53!UBERON:0004872;1.37e-08;7 | |||
|ontology_enrichment_disease=DOID:0060058!4.95e-07!10 | |||
|ontology_enrichment_disease_v019=DOID:12603;4.72e-15;1!DOID:4960;1.72e-14;1!DOID:0070004;1.72e-14;1 | |||
|ontology_enrichment_disease_v019_2=DOID:12603,4.73e-15,1;DOID:4960,1.84e-14,1;DOID:0070004,1.84e-14,1 | |||
|ontology_enrichment_uberon=UBERON:0002106!1.21e-13!3;UBERON:0004854!1.21e-13!3;UBERON:0009034!1.21e-13!3;UBERON:0002095!1.21e-13!3;UBERON:0004782!1.21e-13!3;UBERON:0003281!1.21e-13!3;UBERON:0009664!1.21e-13!3;UBERON:0002296!1.21e-13!3;UBERON:0005602!1.21e-13!3;UBERON:0001179!1.21e-13!3;UBERON:0006293!1.21e-13!3;UBERON:0007023!2.73e-12!115;UBERON:0004177!7.94e-10!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0002106;8.68e-19;3!UBERON:0000029;7.63e-15;1!UBERON:0002363;1.72e-14;1!UBERON:0004177;1.15e-11;5!UBERON:0005057;1.15e-11;5!UBERON:0002405;3.58e-08;27!UBERON:0002360;6.80e-08;2!UBERON:0000094;6.80e-08;2!UBERON:0010743;6.80e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,1.14e-18,3;UBERON:0004854,1.14e-18,3;UBERON:0009034,1.14e-18,3;UBERON:0002095,1.14e-18,3;UBERON:0004782,1.14e-18,3;UBERON:0003281,1.14e-18,3;UBERON:0009664,1.14e-18,3;UBERON:0002296,1.14e-18,3;UBERON:0005602,1.14e-18,3;UBERON:0001179,1.14e-18,3;UBERON:0006293,1.14e-18,3;UBERON:0000029,7.13e-15,1;UBERON:0002363,3.15e-14,1;UBERON:0007645,3.15e-14,1;UBERON:0007647,3.15e-14,1;UBERON:0010115,3.15e-14,1;UBERON:0004177,1.53e-08,7;UBERON:0005057,1.53e-08,7;UBERON:0005409,1.91e-08,25;UBERON:0002360,9.19e-08,2;UBERON:0000094,9.19e-08,2;UBERON:0010743,9.19e-08,2;UBERON:0000945,1.40e-07,8;UBERON:0010039,1.40e-07,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.37544130346312,0.492603536699674,1.33808328233255,0,0,0,0,0,0,0.542270404062111,0.995184627411951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209658645508376,0,0,0,0,0,0,0,0.546138611262131,0,0,0,1.14950487990897,0,0,1.1384259382189,0.587237189370939,0.764546456250458,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270803863765016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.714695326373367,0,0,0,0,0,0,0,11.5197968577946,0.577076851905779,0,0,0,0.191505370132367,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.58478091468246,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23840590304675,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01098527405581,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387956065953678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0,0.414239055347196,2.97699613087171,0,3.28840015628419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20550485762571,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23658523500376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0.78624198594322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.46630900405095,0,0,0,0,0,0,0,0,3.57138888323444,1.09578409555081,0.0999411559249289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227336094654718,0.267964130156178,0,0,0.213233981900981,0,0.0645889098360061,0,0,0.0636471582781649,0,0,0,0.404112318087525,0.358611026963382,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |||
|short_description=p7@IGHM | |||
}} |
Revision as of 03:34, 11 September 2013
Short description: | p7@IGHM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_IGHM_5end |
Coexpression cluster: | C282_acute_B_tonsil_CD19_submaxillary_lymph_throat |
Association with transcript: | 122bp_to_J00258_5end |
EntrezGene: | IGHM |
HGNC: | 5541 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 1.90e-26 | 24 |
pro-B cell | 1.90e-26 | 24 |
lymphocyte | 2.67e-15 | 53 |
common lymphoid progenitor | 2.67e-15 | 53 |
lymphoid lineage restricted progenitor cell | 5.96e-12 | 52 |
Ontology term | p-value | n |
---|---|---|
spleen | 1.14e-18 | 3 |
gastrointestinal system mesentery | 1.14e-18 | 3 |
stomach region | 1.14e-18 | 3 |
mesentery | 1.14e-18 | 3 |
gastrointestinal system serosa | 1.14e-18 | 3 |
mesentery of stomach | 1.14e-18 | 3 |
gut mesentery | 1.14e-18 | 3 |
dorsal mesentery | 1.14e-18 | 3 |
dorsal mesogastrium | 1.14e-18 | 3 |
peritoneal cavity | 1.14e-18 | 3 |
spleen primordium | 1.14e-18 | 3 |
lymph node | 7.13e-15 | 1 |
dura mater | 3.15e-14 | 1 |
future meninx | 3.15e-14 | 1 |
ectomeninx | 3.15e-14 | 1 |
future dura mater | 3.15e-14 | 1 |
hemopoietic organ | 1.53e-08 | 7 |
immune organ | 1.53e-08 | 7 |
gastrointestinal system | 1.91e-08 | 25 |
meninx | 9.19e-08 | 2 |
membrane organ | 9.19e-08 | 2 |
meningeal cluster | 9.19e-08 | 2 |
stomach | 1.40e-07 | 8 |
food storage organ | 1.40e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
acute leukemia | 4.73e-15 | 1 |
bone marrow cancer | 1.84e-14 | 1 |
myeloma | 1.84e-14 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.