FFCP PHASE1:Hg19::chr12:53189894..53189905,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3850|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6440|TSSclassifier=W|UniProt=|association_with_transcript=0bp_to_ENST00000417996_5end|coexpression_cluster_id=C197|description=CAGE_peak_1_at_KRT3_5end|id=chr12:53189894..53189905,-|ontology_enrichment_celltype=CL:0000575!8.98e-41!2;CL:0002623!5.93e-08!3;CL:0002159!4.13e-07!13|ontology_enrichment_celltype_v019=CL:0000575;5.22e-79;2!CL:0002623;2.09e-14;3!CL:0002159;2.51e-12;14!CL:0000622;3.49e-09;5!CL:0000154;7.25e-08;6|ontology_enrichment_celltype_v019_2=CL:0000575,5.22e-79,2;CL:0002623,2.09e-14,3;CL:0002159,2.51e-12,14;CL:0000622,3.49e-09,5;CL:0000154,7.25e-08,6|ontology_enrichment_development_v019=UBERON:0008814;3.11e-21;2!UBERON:0010056;3.11e-21;2|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000020!7.64e-22!23;UBERON:0000964!5.72e-21!4;UBERON:0004348!5.72e-21!4;UBERON:0005427!5.72e-21!4;UBERON:0001032!6.06e-21!24;UBERON:0004456!6.06e-21!24;UBERON:0002372!7.72e-21!1;UBERON:0001961!7.72e-21!1;UBERON:0001744!7.72e-21!1;UBERON:0001735!7.72e-21!1;UBERON:0000970!2.48e-16!20;UBERON:0002104!1.42e-15!21;UBERON:0001444!7.56e-15!48;UBERON:0000078!1.32e-10!18;UBERON:0000019!4.44e-10!19;UBERON:0000047!4.44e-10!19;UBERON:0004088!4.44e-10!19;UBERON:0003072!4.44e-10!19;UBERON:0003071!4.44e-10!19;UBERON:0004128!4.44e-10!19;UBERON:0000166!3.54e-09!21;UBERON:0001456!3.54e-09!21;UBERON:0001042!6.28e-09!10;UBERON:0009145!6.28e-09!10;UBERON:0006562!3.37e-08!11;UBERON:0001723!4.52e-08!3;UBERON:0001033!4.52e-08!3;UBERON:0010056!4.52e-08!3;UBERON:0000165!5.03e-07!28;UBERON:0000930!5.03e-07!28;UBERON:0005085!8.42e-07!29|ontology_enrichment_uberon_v019=UBERON:0000964;3.31e-40;4!UBERON:0010409;3.31e-40;4!UBERON:0000020;3.80e-28;23!UBERON:0001032;5.19e-27;24!UBERON:0004456;5.19e-27;24!UBERON:0000970;1.34e-18;20!UBERON:0002104;9.30e-18;21!UBERON:0010313;8.13e-17;10!UBERON:0001723;1.22e-14;3!UBERON:0001033;1.22e-14;3!UBERON:0001801;2.51e-12;14!UBERON:0000033;6.97e-11;50!UBERON:0007811;2.23e-10;52!UBERON:0000019;2.36e-09;19!UBERON:0000047;2.36e-09;19!UBERON:0004088;2.36e-09;19!UBERON:0010230;2.36e-09;19!UBERON:0001456;1.48e-08;21!UBERON:0000153;6.15e-08;54!UBERON:0001044;7.25e-08;6!UBERON:0003293;7.25e-08;6!UBERON:0003294;7.25e-08;6!UBERON:0010047;7.25e-08;6!UBERON:0003408;7.25e-08;6!UBERON:0000167;7.25e-08;6!UBERON:0001444;1.12e-07;48|ontology_enrichment_uberon_v019_2=UBERON:0000964,3.31e-40,4;UBERON:0010409,3.31e-40,4;UBERON:0004348,3.31e-40,4;UBERON:0005427,3.31e-40,4;UBERON:0000020,5.19e-27,24;UBERON:0001032,5.19e-27,24;UBERON:0004456,5.19e-27,24;UBERON:0000970,9.30e-18,21;UBERON:0002104,9.30e-18,21;UBERON:0010313,8.13e-17,10;UBERON:0002342,8.13e-17,10;UBERON:0005062,8.13e-17,10;UBERON:0001723,1.22e-14,3;UBERON:0001033,1.22e-14,3;UBERON:0010056,1.22e-14,3;UBERON:0001444,1.35e-13,49;UBERON:0001801,2.51e-12,14;UBERON:0000033,5.51e-12,56;UBERON:0000153,6.84e-11,62;UBERON:0007811,6.84e-11,62;UBERON:0000019,6.17e-09,20;UBERON:0000047,6.17e-09,20;UBERON:0010312,6.17e-09,20;UBERON:0004088,6.17e-09,20;UBERON:0010230,6.17e-09,20;UBERON:0003072,6.17e-09,20;UBERON:0004128,6.17e-09,20;UBERON:0003071,6.17e-09,20;UBERON:0000166,3.15e-08,22;UBERON:0001456,3.27e-08,22;UBERON:0001044,7.25e-08,6;UBERON:0003293,7.25e-08,6;UBERON:0003294,7.25e-08,6;UBERON:0010047,7.25e-08,6;UBERON:0000167,7.25e-08,6;UBERON:0003102,4.76e-07,99|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.18577172975525,3.33705998505986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,20.3382666702479,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3850 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6440 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000417996_5end | |||
|coexpression_cluster_id=C197 | |||
|description=CAGE_peak_1_at_KRT3_5end | |||
|id=chr12:53189894..53189905,- | |||
|ontology_enrichment_celltype=CL:0000575!8.98e-41!2;CL:0002623!5.93e-08!3;CL:0002159!4.13e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0000575;5.22e-79;2!CL:0002623;2.09e-14;3!CL:0002159;2.51e-12;14!CL:0000622;3.49e-09;5!CL:0000154;7.25e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000575,5.22e-79,2;CL:0002623,2.09e-14,3;CL:0002159,2.51e-12,14;CL:0000622,3.49e-09,5;CL:0000154,7.25e-08,6 | |||
|ontology_enrichment_development_v019=UBERON:0008814;3.11e-21;2!UBERON:0010056;3.11e-21;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000020!7.64e-22!23;UBERON:0000964!5.72e-21!4;UBERON:0004348!5.72e-21!4;UBERON:0005427!5.72e-21!4;UBERON:0001032!6.06e-21!24;UBERON:0004456!6.06e-21!24;UBERON:0002372!7.72e-21!1;UBERON:0001961!7.72e-21!1;UBERON:0001744!7.72e-21!1;UBERON:0001735!7.72e-21!1;UBERON:0000970!2.48e-16!20;UBERON:0002104!1.42e-15!21;UBERON:0001444!7.56e-15!48;UBERON:0000078!1.32e-10!18;UBERON:0000019!4.44e-10!19;UBERON:0000047!4.44e-10!19;UBERON:0004088!4.44e-10!19;UBERON:0003072!4.44e-10!19;UBERON:0003071!4.44e-10!19;UBERON:0004128!4.44e-10!19;UBERON:0000166!3.54e-09!21;UBERON:0001456!3.54e-09!21;UBERON:0001042!6.28e-09!10;UBERON:0009145!6.28e-09!10;UBERON:0006562!3.37e-08!11;UBERON:0001723!4.52e-08!3;UBERON:0001033!4.52e-08!3;UBERON:0010056!4.52e-08!3;UBERON:0000165!5.03e-07!28;UBERON:0000930!5.03e-07!28;UBERON:0005085!8.42e-07!29 | |||
|ontology_enrichment_uberon_v019=UBERON:0000964;3.31e-40;4!UBERON:0010409;3.31e-40;4!UBERON:0000020;3.80e-28;23!UBERON:0001032;5.19e-27;24!UBERON:0004456;5.19e-27;24!UBERON:0000970;1.34e-18;20!UBERON:0002104;9.30e-18;21!UBERON:0010313;8.13e-17;10!UBERON:0001723;1.22e-14;3!UBERON:0001033;1.22e-14;3!UBERON:0001801;2.51e-12;14!UBERON:0000033;6.97e-11;50!UBERON:0007811;2.23e-10;52!UBERON:0000019;2.36e-09;19!UBERON:0000047;2.36e-09;19!UBERON:0004088;2.36e-09;19!UBERON:0010230;2.36e-09;19!UBERON:0001456;1.48e-08;21!UBERON:0000153;6.15e-08;54!UBERON:0001044;7.25e-08;6!UBERON:0003293;7.25e-08;6!UBERON:0003294;7.25e-08;6!UBERON:0010047;7.25e-08;6!UBERON:0003408;7.25e-08;6!UBERON:0000167;7.25e-08;6!UBERON:0001444;1.12e-07;48 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000964,3.31e-40,4;UBERON:0010409,3.31e-40,4;UBERON:0004348,3.31e-40,4;UBERON:0005427,3.31e-40,4;UBERON:0000020,5.19e-27,24;UBERON:0001032,5.19e-27,24;UBERON:0004456,5.19e-27,24;UBERON:0000970,9.30e-18,21;UBERON:0002104,9.30e-18,21;UBERON:0010313,8.13e-17,10;UBERON:0002342,8.13e-17,10;UBERON:0005062,8.13e-17,10;UBERON:0001723,1.22e-14,3;UBERON:0001033,1.22e-14,3;UBERON:0010056,1.22e-14,3;UBERON:0001444,1.35e-13,49;UBERON:0001801,2.51e-12,14;UBERON:0000033,5.51e-12,56;UBERON:0000153,6.84e-11,62;UBERON:0007811,6.84e-11,62;UBERON:0000019,6.17e-09,20;UBERON:0000047,6.17e-09,20;UBERON:0010312,6.17e-09,20;UBERON:0004088,6.17e-09,20;UBERON:0010230,6.17e-09,20;UBERON:0003072,6.17e-09,20;UBERON:0004128,6.17e-09,20;UBERON:0003071,6.17e-09,20;UBERON:0000166,3.15e-08,22;UBERON:0001456,3.27e-08,22;UBERON:0001044,7.25e-08,6;UBERON:0003293,7.25e-08,6;UBERON:0003294,7.25e-08,6;UBERON:0010047,7.25e-08,6;UBERON:0000167,7.25e-08,6;UBERON:0003102,4.76e-07,99 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.18577172975525,3.33705998505986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,20.3382666702479,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,1.38251932362818,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,76.6362952597304,0,0.134704106029175,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@KRT3 | |||
}} |
Revision as of 23:13, 10 September 2013
Short description: | p1@KRT3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_KRT3_5end |
Coexpression cluster: | C197_tongue_esophagus_tonsil_salivary_cervix_nasal_Gingival |
Association with transcript: | 0bp_to_ENST00000417996_5end |
EntrezGene: | KRT3 |
HGNC: | 6440 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
corneal epithelial cell | 5.22e-79 | 2 |
acinar cell of salivary gland | 2.09e-14 | 3 |
general ecto-epithelial cell | 2.51e-12 | 14 |
acinar cell | 3.49e-09 | 5 |
protein secreting cell | 7.25e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
cornea | 3.31e-40 | 4 |
eye surface | 3.31e-40 | 4 |
optic eminence | 3.31e-40 | 4 |
corneal primordium | 3.31e-40 | 4 |
sense organ | 5.19e-27 | 24 |
sensory system | 5.19e-27 | 24 |
entire sense organ system | 5.19e-27 | 24 |
eye | 9.30e-18 | 21 |
visual system | 9.30e-18 | 21 |
neural crest-derived structure | 8.13e-17 | 10 |
neural crest | 8.13e-17 | 10 |
neural fold | 8.13e-17 | 10 |
tongue | 1.22e-14 | 3 |
gustatory system | 1.22e-14 | 3 |
future tongue | 1.22e-14 | 3 |
subdivision of head | 1.35e-13 | 49 |
anterior segment of eyeball | 2.51e-12 | 14 |
head | 5.51e-12 | 56 |
anterior region of body | 6.84e-11 | 62 |
craniocervical region | 6.84e-11 | 62 |
camera-type eye | 6.17e-09 | 20 |
simple eye | 6.17e-09 | 20 |
immature eye | 6.17e-09 | 20 |
ocular region | 6.17e-09 | 20 |
eyeball of camera-type eye | 6.17e-09 | 20 |
optic cup | 6.17e-09 | 20 |
optic vesicle | 6.17e-09 | 20 |
eye primordium | 6.17e-09 | 20 |
oral opening | 3.15e-08 | 22 |
face | 3.27e-08 | 22 |
saliva-secreting gland | 7.25e-08 | 6 |
gland of oral region | 7.25e-08 | 6 |
gland of foregut | 7.25e-08 | 6 |
oral gland | 7.25e-08 | 6 |
oral cavity | 7.25e-08 | 6 |
surface structure | 4.76e-07 | 99 |
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