FFCP PHASE1:Hg19::chr11:2017005..2017026,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=283120|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=4713|TSSclassifier=S|UniProt=|association_with_transcript=-202bp_to_BC010185_5end|coexpression_cluster_id=C227|description=CAGE_peak_27_at_H19_5end|id=chr11:2017005..2017026,-|ontology_enrichment_celltype=CL:0000188!5.31e-07!9|ontology_enrichment_celltype_v019=CL:0000349;1.68e-19;19!CL:0002577;1.51e-09;3!CL:0000515;1.18e-07;3!CL:0002536;7.68e-07;2|ontology_enrichment_celltype_v019_2=CL:0000349,1.62e-19,19;CL:0002577,1.54e-09,3;CL:0002536,7.91e-07,2|ontology_enrichment_development_v019=UBERON:0008947;6.18e-09;29|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005631!1.22e-13!14;UBERON:0000158!1.22e-13!14;UBERON:0001737!2.05e-12!9;UBERON:0001557!3.24e-11!19;UBERON:0000478!1.19e-10!24;UBERON:0003124!3.78e-10!7;UBERON:0003104!6.26e-10!238;UBERON:0009142!6.26e-10!238;UBERON:0000481!4.23e-09!347;UBERON:0004119!4.92e-09!169;UBERON:0000925!4.92e-09!169;UBERON:0006595!4.92e-09!169;UBERON:0000077!1.60e-08!130;UBERON:0004921!9.34e-08!129;UBERON:0004185!9.34e-08!129;UBERON:0004923!9.82e-08!57;UBERON:0001007!1.25e-07!155;UBERON:0001555!1.25e-07!155;UBERON:0007026!1.25e-07!155|ontology_enrichment_uberon_v019=UBERON:0001737;1.46e-23;9!UBERON:0001557;1.46e-23;9!UBERON:0000478;2.01e-20;24!UBERON:0005631;8.53e-14;10!UBERON:0000158;8.53e-14;10!UBERON:0001987;7.63e-12;4!UBERON:0000305;1.75e-10;7!UBERON:0000922;1.94e-09;49!UBERON:0001723;4.74e-09;3!UBERON:0001033;4.74e-09;3!UBERON:0001134;7.78e-09;16!UBERON:0002036;7.78e-09;16|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.39e-23,9;UBERON:0005631,2.87e-23,14;UBERON:0000158,2.87e-23,14;UBERON:0000478,1.94e-20,24;UBERON:0001557,2.07e-18,19;UBERON:0003124,1.20e-14,7;UBERON:0001987,7.75e-12,4;UBERON:0004340,7.75e-12,4;UBERON:0000305,1.79e-10,7;UBERON:0004871,4.21e-09,8;UBERON:0001723,5.15e-09,3;UBERON:0001033,5.15e-09,3;UBERON:0010056,5.15e-09,3;UBERON:0000072,3.50e-08,47;UBERON:0004119,6.60e-08,160;UBERON:0000925,6.60e-08,160;UBERON:0006595,6.60e-08,160;UBERON:0000065,9.60e-08,54|phase1_expression=0.908391896352783,0,0.422863212287913,0,0.446961094427288,6.10636966870258,0,0,0,0.245733936501509,0,10.4851858622483,10.0231451726812,0,0.994192127183747,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.928896739896456,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.6284119788377,0.670700859703636,0.383587685530591,0,0,0,0,1.94653948121054,0.0945348171640679,0,0,0.0654895377488563,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.311211035399766,0.134710672069688,0.326923806226917,0.908144565869588,4.60940739583999,0.468642863667593,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0,0,0,0,0,0,0,0.580969714347592,0.310983165046111,0.504641701751257,0,0,0,0,0,0,6.62518080223126,5.90046415273356,6.26628677697053,6.17646247301406,5.44698610231015,5.45722423955522,9.57302287937167,5.69042248863504,6.15595451114225,0.738155454624648,0,0.4115740113314,4.41026134156626,0,0,1.18157981336281,0,0,0.171567810298526,0,0,0,1.574003567695,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71072446022705,0,0,0,0,0,0,0,0,0,0,0,0.257207374262142,0,0,0.428933980974443,18.4491345833091,1.64648067356154,0,0,0,0,0,0,0,0,0,0,0,0,1.01346914667305,1.43833425785268,1.43248770591916,0,0,0,0,0,0,0,0,0,0,0,0,0.981531933753119,0,0.271265023699736,0,0,0,0,0,0,1.03473071292505,0,0,0,6.2656370388077,10.6374461381365,0,0,0,7.27506171471023,29.9583791118895,13.0027826131763,0.744323423456331,0.306923946576125,0,0.256278298511402,0,0.160853921143607,2.96836132889982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431831832204279,3.08454505380579,0.270946437543853,0,0,0,0,0,0,0,0,0,0.824328093181778,0,0,0,0,0,0.676695028044854,0.462145851343933,0.921022048356777,0.551346289938122,0.107420244868274,1.0151168573996,0.255679882248303,3.29418531892928,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0.744316738719335,0.316379424718726,0,0,47.0732886837312,0,0,0,0,0,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0.286822704408103,0.491245205065606,0,0,0,0,0,0.699869440489966,0,0,0,0.376575203107117,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23.3969595042936,11.5816225524729,35.0163200393125,0,0,0,0,0.211125408127993,0.19924798825107,0.276283915531148,3.27512572210559,0,0,0,0,0,0,0.394573622547734,0,0,0,0,0,0,0,0,0,0,0.472775363535873,0.689486746482929,0,0,0,0,0,0,0,0,0,0.139423744278603,0.230850775511391,0,0,2.96200226552248,2.7161842980502,13.3980487087406,0.824378340616761,54.9025819299194,0,0,0,0,0.19606253431774,0.335643173951685,0,0,0,0,0,0,0.995261931078505,0.0884575645033392,1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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=283120 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=4713 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-202bp_to_BC010185_5end | |||
|coexpression_cluster_id=C227 | |||
|description=CAGE_peak_27_at_H19_5end | |||
|id=chr11:2017005..2017026,- | |||
|ontology_enrichment_celltype=CL:0000188!5.31e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000349;1.68e-19;19!CL:0002577;1.51e-09;3!CL:0000515;1.18e-07;3!CL:0002536;7.68e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,1.62e-19,19;CL:0002577,1.54e-09,3;CL:0002536,7.91e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0008947;6.18e-09;29 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!1.22e-13!14;UBERON:0000158!1.22e-13!14;UBERON:0001737!2.05e-12!9;UBERON:0001557!3.24e-11!19;UBERON:0000478!1.19e-10!24;UBERON:0003124!3.78e-10!7;UBERON:0003104!6.26e-10!238;UBERON:0009142!6.26e-10!238;UBERON:0000481!4.23e-09!347;UBERON:0004119!4.92e-09!169;UBERON:0000925!4.92e-09!169;UBERON:0006595!4.92e-09!169;UBERON:0000077!1.60e-08!130;UBERON:0004921!9.34e-08!129;UBERON:0004185!9.34e-08!129;UBERON:0004923!9.82e-08!57;UBERON:0001007!1.25e-07!155;UBERON:0001555!1.25e-07!155;UBERON:0007026!1.25e-07!155 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.46e-23;9!UBERON:0001557;1.46e-23;9!UBERON:0000478;2.01e-20;24!UBERON:0005631;8.53e-14;10!UBERON:0000158;8.53e-14;10!UBERON:0001987;7.63e-12;4!UBERON:0000305;1.75e-10;7!UBERON:0000922;1.94e-09;49!UBERON:0001723;4.74e-09;3!UBERON:0001033;4.74e-09;3!UBERON:0001134;7.78e-09;16!UBERON:0002036;7.78e-09;16 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.39e-23,9;UBERON:0005631,2.87e-23,14;UBERON:0000158,2.87e-23,14;UBERON:0000478,1.94e-20,24;UBERON:0001557,2.07e-18,19;UBERON:0003124,1.20e-14,7;UBERON:0001987,7.75e-12,4;UBERON:0004340,7.75e-12,4;UBERON:0000305,1.79e-10,7;UBERON:0004871,4.21e-09,8;UBERON:0001723,5.15e-09,3;UBERON:0001033,5.15e-09,3;UBERON:0010056,5.15e-09,3;UBERON:0000072,3.50e-08,47;UBERON:0004119,6.60e-08,160;UBERON:0000925,6.60e-08,160;UBERON:0006595,6.60e-08,160;UBERON:0000065,9.60e-08,54 | |||
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|short_description=p27@H19 | |||
}} |
Revision as of 17:09, 10 September 2013
Short description: | p27@H19 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_27_at_H19_5end |
Coexpression cluster: | C227_chorionic_amniotic_Mesenchymal_Placental_gastric_diaphragm_tongue |
Association with transcript: | -202bp_to_BC010185_5end |
EntrezGene: | H19 |
HGNC: | 4713 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 1.62e-19 | 19 |
placental epithelial cell | 1.54e-09 | 3 |
amniotic epithelial cell | 7.91e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
larynx | 1.39e-23 | 9 |
extraembryonic membrane | 2.87e-23 | 14 |
membranous layer | 2.87e-23 | 14 |
extraembryonic structure | 1.94e-20 | 24 |
upper respiratory tract | 2.07e-18 | 19 |
chorion | 1.20e-14 | 7 |
placenta | 7.75e-12 | 4 |
allantois | 7.75e-12 | 4 |
amnion | 1.79e-10 | 7 |
somatic layer of lateral plate mesoderm | 4.21e-09 | 8 |
tongue | 5.15e-09 | 3 |
gustatory system | 5.15e-09 | 3 |
future tongue | 5.15e-09 | 3 |
segment of respiratory tract | 3.50e-08 | 47 |
endoderm-derived structure | 6.60e-08 | 160 |
endoderm | 6.60e-08 | 160 |
presumptive endoderm | 6.60e-08 | 160 |
respiratory tract | 9.60e-08 | 54 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.