FFCP PHASE1:Hg19::chr11:112034780..112034795,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3606|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=5986|TSSclassifier=S|UniProt=Q6WWJ7|association_with_transcript=1bp_to_ENST00000524595_5end|coexpression_cluster_id=C2095|description=CAGE_peak_3_at_IL18_5end|id=chr11:112034780..112034795,-|ontology_enrichment_celltype=CL:0000557!1.41e-22!71;CL:0002009!1.80e-21!65;CL:0000839!2.37e-21!70;CL:0002194!2.41e-20!63;CL:0000576!2.41e-20!63;CL:0000040!2.41e-20!63;CL:0000559!2.41e-20!63;CL:0000066!7.95e-18!254;CL:0000766!1.21e-17!76;CL:0002076!6.29e-16!43;CL:0000860!1.62e-15!45;CL:0002057!8.14e-14!42;CL:0000223!3.15e-13!59;CL:0000763!5.70e-13!112;CL:0000049!5.70e-13!112;CL:0000077!1.38e-08!19;CL:0000076!3.52e-07!62;CL:0002251!3.84e-07!21;CL:0002368!6.74e-07!13|ontology_enrichment_celltype_v019=CL:0000473;1.26e-14;39!CL:0000234;1.26e-14;39!CL:0002076;6.44e-14;42!CL:0000860;4.65e-13;33!CL:0002057;4.65e-13;33!CL:0000077;1.75e-10;19!CL:0000576;4.13e-10;48!CL:0000766;4.56e-09;69!CL:0002251;6.04e-09;20!CL:0002368;9.40e-08;13!CL:0002202;4.38e-07;9!CL:0002632;4.38e-07;9!CL:0000235;8.35e-07;6|ontology_enrichment_celltype_v019_2=CL:0000066,1.29e-24,253;CL:0000557,1.96e-22,67;CL:0002009,1.12e-20,61;CL:0000839,1.91e-20,66;CL:0002194,2.80e-19,59;CL:0000576,2.80e-19,59;CL:0000040,2.80e-19,59;CL:0000559,2.80e-19,59;CL:0002076,2.98e-19,42;CL:0000473,2.89e-18,48;CL:0000234,2.89e-18,48;CL:0000766,2.52e-17,72;CL:0000223,1.10e-14,58;CL:0000860,9.85e-14,42;CL:0002057,9.85e-14,42;CL:0000076,1.10e-10,63;CL:0000077,2.24e-10,19;CL:0000763,2.53e-09,108;CL:0000049,2.53e-09,108;CL:0002251,4.25e-09,20;CL:0002368,6.52e-08,13;CL:0002202,3.61e-07,9;CL:0002632,3.61e-07,9;CL:0000235,8.26e-07,6|ontology_enrichment_development_v019=CL:0002057;1.11e-10;42!CL:0000223;1.63e-07;58!UBERON:0008947;2.77e-07;29|ontology_enrichment_disease=DOID:305!5.58e-13!106;DOID:1749!2.57e-07!14|ontology_enrichment_disease_v019=DOID:1749;1.87e-09;14!DOID:299;8.55e-07;25|ontology_enrichment_disease_v019_2=DOID:305,3.06e-17,106;DOID:0050687,7.02e-10,143;DOID:1749,2.59e-09,14;DOID:299,5.37e-07,25|ontology_enrichment_uberon=UBERON:0000062!7.61e-22!511;UBERON:0002371!1.21e-18!80;UBERON:0002390!3.56e-16!102;UBERON:0003061!3.56e-16!102;UBERON:0001474!1.99e-15!86;UBERON:0002405!2.45e-15!115;UBERON:0002193!1.34e-14!112;UBERON:0004119!4.34e-13!169;UBERON:0000925!4.34e-13!169;UBERON:0006595!4.34e-13!169;UBERON:0000467!5.52e-12!625;UBERON:0000480!8.25e-12!626;UBERON:0004765!1.06e-11!101;UBERON:0001434!1.06e-11!101;UBERON:0002050!1.20e-11!605;UBERON:0005423!1.20e-11!605;UBERON:0001007!1.43e-11!155;UBERON:0001555!1.43e-11!155;UBERON:0007026!1.43e-11!155;UBERON:0000923!2.07e-11!604;UBERON:0005291!2.07e-11!604;UBERON:0006598!2.07e-11!604;UBERON:0002532!2.07e-11!604;UBERON:0004921!2.50e-11!129;UBERON:0004185!2.50e-11!129;UBERON:0000922!3.27e-11!612;UBERON:0000468!1.15e-09!659;UBERON:0000065!1.74e-09!53;UBERON:0001004!1.99e-09!72;UBERON:0001041!9.77e-09!98;UBERON:0008947!1.08e-08!38;UBERON:0003258!1.08e-08!38;UBERON:0005911!1.45e-08!82;UBERON:0000077!1.56e-08!130;UBERON:0001737!6.10e-08!9;UBERON:0000072!1.41e-07!46|ontology_enrichment_uberon_v019=UBERON:0001737;3.64e-10;9!UBERON:0001557;3.64e-10;9!UBERON:0000065;2.25e-08;44!UBERON:0000072;1.48e-07;37|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.16e-17,76;UBERON:0002405,1.03e-15,93;UBERON:0004119,3.66e-15,160;UBERON:0000925,3.66e-15,160;UBERON:0006595,3.66e-15,160;UBERON:0001474,4.03e-15,82;UBERON:0004765,5.56e-15,90;UBERON:0002390,3.89e-14,98;UBERON:0003061,3.89e-14,98;UBERON:0001007,1.37e-13,145;UBERON:0001555,1.37e-13,145;UBERON:0007026,1.37e-13,145;UBERON:0004921,8.13e-13,118;UBERON:0002193,8.16e-13,108;UBERON:0001004,6.25e-12,74;UBERON:0001434,8.73e-12,100;UBERON:0001041,3.42e-11,87;UBERON:0000065,8.75e-11,54;UBERON:0008947,2.71e-10,38;UBERON:0003258,2.71e-10,38;UBERON:0001737,3.76e-10,9;UBERON:0000072,2.24e-09,47;UBERON:0002050,9.31e-09,564;UBERON:0005423,1.02e-08,581;UBERON:0001557,2.44e-08,19;UBERON:0000922,1.15e-07,592;UBERON:0000923,1.37e-07,560;UBERON:0010316,1.37e-07,560;UBERON:0005291,1.37e-07,560;UBERON:0006598,1.37e-07,560;UBERON:0010317,1.37e-07,560;UBERON:0002532,1.37e-07,560;UBERON:0005911,3.97e-07,82|phase1_expression=0.363356758541113,0,0.422863212287913,0,0.446961094427288,1.74467704820074,0,0,0,7.86348596804828,2.09340350391728,0,0,0,0,2.6893005858071,0,0,0,0,0,0,0.286235987131057,0.273748850145768,0.125542639594803,0,0,0,0,0,0.619264493264304,9.19421224478927,6.92773613189975,3.32778609150109,0,0,0.880801318004542,4.9859586767869,7.62068900386538,2.60413044859022,6.26963327871788,4.85840499028469,10.5605982730016,1.16318591023652,1.51150377475524,0.727752183563449,7.90258725479328,9.04569353648017,25.3959224133985,1.1507695692886,2.81776777182011,2.60130452877444,83.4284547382617,43.8929584837002,41.9822108442459,4.70605848856512,6.27684145133045,11.6856211911444,62.747197936035,50.0649282238706,65.8517239573012,0,0.199463657621632,0.426224750532694,78.0662851910891,33.4757282567772,71.624558634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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3606 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5986 | |||
|TSSclassifier=S | |||
|UniProt=Q6WWJ7 | |||
|association_with_transcript=1bp_to_ENST00000524595_5end | |||
|coexpression_cluster_id=C2095 | |||
|description=CAGE_peak_3_at_IL18_5end | |||
|id=chr11:112034780..112034795,- | |||
|ontology_enrichment_celltype=CL:0000557!1.41e-22!71;CL:0002009!1.80e-21!65;CL:0000839!2.37e-21!70;CL:0002194!2.41e-20!63;CL:0000576!2.41e-20!63;CL:0000040!2.41e-20!63;CL:0000559!2.41e-20!63;CL:0000066!7.95e-18!254;CL:0000766!1.21e-17!76;CL:0002076!6.29e-16!43;CL:0000860!1.62e-15!45;CL:0002057!8.14e-14!42;CL:0000223!3.15e-13!59;CL:0000763!5.70e-13!112;CL:0000049!5.70e-13!112;CL:0000077!1.38e-08!19;CL:0000076!3.52e-07!62;CL:0002251!3.84e-07!21;CL:0002368!6.74e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.26e-14;39!CL:0000234;1.26e-14;39!CL:0002076;6.44e-14;42!CL:0000860;4.65e-13;33!CL:0002057;4.65e-13;33!CL:0000077;1.75e-10;19!CL:0000576;4.13e-10;48!CL:0000766;4.56e-09;69!CL:0002251;6.04e-09;20!CL:0002368;9.40e-08;13!CL:0002202;4.38e-07;9!CL:0002632;4.38e-07;9!CL:0000235;8.35e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.29e-24,253;CL:0000557,1.96e-22,67;CL:0002009,1.12e-20,61;CL:0000839,1.91e-20,66;CL:0002194,2.80e-19,59;CL:0000576,2.80e-19,59;CL:0000040,2.80e-19,59;CL:0000559,2.80e-19,59;CL:0002076,2.98e-19,42;CL:0000473,2.89e-18,48;CL:0000234,2.89e-18,48;CL:0000766,2.52e-17,72;CL:0000223,1.10e-14,58;CL:0000860,9.85e-14,42;CL:0002057,9.85e-14,42;CL:0000076,1.10e-10,63;CL:0000077,2.24e-10,19;CL:0000763,2.53e-09,108;CL:0000049,2.53e-09,108;CL:0002251,4.25e-09,20;CL:0002368,6.52e-08,13;CL:0002202,3.61e-07,9;CL:0002632,3.61e-07,9;CL:0000235,8.26e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002057;1.11e-10;42!CL:0000223;1.63e-07;58!UBERON:0008947;2.77e-07;29 | |||
|ontology_enrichment_disease=DOID:305!5.58e-13!106;DOID:1749!2.57e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.87e-09;14!DOID:299;8.55e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.06e-17,106;DOID:0050687,7.02e-10,143;DOID:1749,2.59e-09,14;DOID:299,5.37e-07,25 | |||
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|ontology_enrichment_uberon_v019=UBERON:0001737;3.64e-10;9!UBERON:0001557;3.64e-10;9!UBERON:0000065;2.25e-08;44!UBERON:0000072;1.48e-07;37 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.16e-17,76;UBERON:0002405,1.03e-15,93;UBERON:0004119,3.66e-15,160;UBERON:0000925,3.66e-15,160;UBERON:0006595,3.66e-15,160;UBERON:0001474,4.03e-15,82;UBERON:0004765,5.56e-15,90;UBERON:0002390,3.89e-14,98;UBERON:0003061,3.89e-14,98;UBERON:0001007,1.37e-13,145;UBERON:0001555,1.37e-13,145;UBERON:0007026,1.37e-13,145;UBERON:0004921,8.13e-13,118;UBERON:0002193,8.16e-13,108;UBERON:0001004,6.25e-12,74;UBERON:0001434,8.73e-12,100;UBERON:0001041,3.42e-11,87;UBERON:0000065,8.75e-11,54;UBERON:0008947,2.71e-10,38;UBERON:0003258,2.71e-10,38;UBERON:0001737,3.76e-10,9;UBERON:0000072,2.24e-09,47;UBERON:0002050,9.31e-09,564;UBERON:0005423,1.02e-08,581;UBERON:0001557,2.44e-08,19;UBERON:0000922,1.15e-07,592;UBERON:0000923,1.37e-07,560;UBERON:0010316,1.37e-07,560;UBERON:0005291,1.37e-07,560;UBERON:0006598,1.37e-07,560;UBERON:0010317,1.37e-07,560;UBERON:0002532,1.37e-07,560;UBERON:0005911,3.97e-07,82 | |||
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| |||
|short_description=p3@IL18 | |||
}} |
Revision as of 15:44, 10 September 2013
Short description: | p3@IL18 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_IL18_5end |
Coexpression cluster: | C2095_Mast_Retinal_CD14_bile_lung_cervical_Gingival |
Association with transcript: | 1bp_to_ENST00000524595_5end |
EntrezGene: | IL18 |
HGNC: | 5986 |
UniProt: | Q6WWJ7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.29e-24 | 253 |
granulocyte monocyte progenitor cell | 1.96e-22 | 67 |
macrophage dendritic cell progenitor | 1.12e-20 | 61 |
myeloid lineage restricted progenitor cell | 1.91e-20 | 66 |
monopoietic cell | 2.80e-19 | 59 |
monocyte | 2.80e-19 | 59 |
monoblast | 2.80e-19 | 59 |
promonocyte | 2.80e-19 | 59 |
endo-epithelial cell | 2.98e-19 | 42 |
defensive cell | 2.89e-18 | 48 |
phagocyte | 2.89e-18 | 48 |
myeloid leukocyte | 2.52e-17 | 72 |
endodermal cell | 1.10e-14 | 58 |
classical monocyte | 9.85e-14 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.85e-14 | 42 |
squamous epithelial cell | 1.10e-10 | 63 |
mesothelial cell | 2.24e-10 | 19 |
myeloid cell | 2.53e-09 | 108 |
common myeloid progenitor | 2.53e-09 | 108 |
epithelial cell of alimentary canal | 4.25e-09 | 20 |
respiratory epithelial cell | 6.52e-08 | 13 |
epithelial cell of tracheobronchial tree | 3.61e-07 | 9 |
epithelial cell of lower respiratory tract | 3.61e-07 | 9 |
macrophage | 8.26e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.16e-17 | 76 |
immune system | 1.03e-15 | 93 |
endoderm-derived structure | 3.66e-15 | 160 |
endoderm | 3.66e-15 | 160 |
presumptive endoderm | 3.66e-15 | 160 |
bone element | 4.03e-15 | 82 |
skeletal element | 5.56e-15 | 90 |
hematopoietic system | 3.89e-14 | 98 |
blood island | 3.89e-14 | 98 |
digestive system | 1.37e-13 | 145 |
digestive tract | 1.37e-13 | 145 |
primitive gut | 1.37e-13 | 145 |
subdivision of digestive tract | 8.13e-13 | 118 |
hemolymphoid system | 8.16e-13 | 108 |
respiratory system | 6.25e-12 | 74 |
skeletal system | 8.73e-12 | 100 |
foregut | 3.42e-11 | 87 |
respiratory tract | 8.75e-11 | 54 |
respiratory primordium | 2.71e-10 | 38 |
endoderm of foregut | 2.71e-10 | 38 |
larynx | 3.76e-10 | 9 |
segment of respiratory tract | 2.24e-09 | 47 |
embryonic structure | 9.31e-09 | 564 |
developing anatomical structure | 1.02e-08 | 581 |
upper respiratory tract | 2.44e-08 | 19 |
embryo | 1.15e-07 | 592 |
germ layer | 1.37e-07 | 560 |
germ layer / neural crest | 1.37e-07 | 560 |
embryonic tissue | 1.37e-07 | 560 |
presumptive structure | 1.37e-07 | 560 |
germ layer / neural crest derived structure | 1.37e-07 | 560 |
epiblast (generic) | 1.37e-07 | 560 |
endo-epithelium | 3.97e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.06e-17 | 106 |
cell type cancer | 7.02e-10 | 143 |
squamous cell carcinoma | 2.59e-09 | 14 |
adenocarcinoma | 5.37e-07 | 25 |
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