FFCP PHASE1:Hg19::chr10:54076479..54076496,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C3025|description=CAGE_peak_at_chr10:54076479..54076496,+|id=chr10:54076479..54076496,+|ontology_enrichment_celltype=CL:0002620!9.48e-11!23;CL:0000057!2.04e-10!75;CL:0000055!7.51e-10!180;CL:0000548!1.47e-08!679;CL:0000004!1.47e-08!679;CL:0000255!1.47e-08!679;CL:0000012!2.52e-08!682|ontology_enrichment_celltype_v019=CL:0002620;2.43e-13;23!CL:0002617;2.84e-11;2!CL:0002579;8.60e-08;3!CL:0002541;1.52e-07;3!CL:0000515;1.52e-07;3!CL:0002334;5.37e-07;12|ontology_enrichment_celltype_v019_2=CL:0002620,1.86e-13,23;CL:0002617,2.57e-11,2;CL:0000057,8.37e-09,76;CL:0002579,6.80e-08,3;CL:0002541,2.06e-07,3;CL:0002334,4.59e-07,12|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:0060084;3.13e-16;3!DOID:127;3.13e-16;3!DOID:0060072;2.67e-12;4|ontology_enrichment_disease_v019_2=DOID:0060084,1.66e-16,3;DOID:127,1.66e-16,3;DOID:0060072,1.66e-12,4|ontology_enrichment_uberon=UBERON:0002097!2.48e-08!40;UBERON:0003688!1.60e-07!6;UBERON:0002358!1.60e-07!6;UBERON:0003684!1.60e-07!6;UBERON:0001178!1.60e-07!6;UBERON:0002199!1.95e-07!45;UBERON:0002416!1.95e-07!45;UBERON:0004923!2.58e-07!57|ontology_enrichment_uberon_v019=UBERON:0000310;1.42e-08;10!UBERON:0003688;1.95e-08;6!UBERON:0002358;1.95e-08;6!UBERON:0003684;1.95e-08;6!UBERON:0001178;1.95e-08;6!UBERON:0001443;8.49e-08;11!UBERON:0003124;1.52e-07;3!UBERON:0000920;1.52e-07;3!UBERON:0002097;5.10e-07;41|ontology_enrichment_uberon_v019_2=UBERON:0002097,8.62e-09,41;UBERON:0000310,1.40e-08,10;UBERON:0003688,1.66e-08,6;UBERON:0002358,1.66e-08,6;UBERON:0003684,1.66e-08,6;UBERON:0001178,1.66e-08,6;UBERON:0001443,8.37e-08,11;UBERON:0002199,1.15e-07,46;UBERON:0002416,1.15e-07,46;UBERON:0000920,2.06e-07,3;UBERON:0003124,6.60e-07,7|phase1_expression=2.36181893051724,1.49870366723688,0.281908808191942,4.00293193412522,0.893922188854576,0.872338524100369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.273748850145768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0.35576626268671,0,0,0,0,0,0.81014194788176,0,0,0,0,0,0.183201743930407,0,0,0,0.496971951695318,0.506522046658319,0.397227542439656,0.860509862246441,0.354668382198357,0,0,0.24666754841716,0,0.269421344139376,0,0,0,0,0,0,0,0.117434498643765,0,0,0,0.245668634623536,0,0,0,0,0,0,0,0,0,0,0,0.340296549480063,3.04962380671065,0.427114777637135,0.423863802319124,3.60109315301283,0.412210116953756,4.3798891807757,1.30281799432113,3.54430297706659,1.75386609290158,0.504867548488229,0.368199594569197,0,2.4850671476163,1.5112814734146,0.847802961552438,0,0,0,0.121973706129595,0,0,0,0,0,0,0,0,1.39310378409594,0,0,0,0,0.220587945464788,0,0.237270619111097,0.134831308160164,0,0,0,0,0,0,0,0,0,0.441463099414651,1.22988438543114,0,0.109750285408626,0,0.301586917234893,0,0,0,0,0,0,0,0,0,3.1608175918371,0,0,0,0,0,0,0,0.0895585227028483,0,1.15014803749563,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0.129271715757778,0,0,0.797814349754612,1.04007436911366,0,1.41849132023278,0.266422179016099,0.428933980974443,0,0,0,0,0,0,0.871533458600294,0.199945982364114,0,0,0,0,0,0,1.01346914667305,1.02738161275192,0.716243852959582,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.623912584592421,1.78428988797162,0.630809660135739,0.117141414992713,0,0,0,0.664225598535437,0,0.695068915744663,0,0,0,0,0,0,1.66435439510497,0,0.248107807818777,0.61384789315225,2.52594084989766,0.128139149255701,1.53512174720011,2.57366273829772,1.48418066444991,0.154209693802656,0,0,0,0.232420756919918,0.241718899183244,0,0.0920809889358963,0.34444334449382,0.546273504020151,0.131124414959424,0,0.0770153371044148,0,0,0,0,0.170093705276516,0.431831832204279,1.54227252690289,0,0,0,0,0.223874754722178,0,0,0,0.328014645699706,0,0,0.0915694648183434,0.082509499920588,0,0,0,0,0,0,0,0.107420244868274,0,0.0852266274161009,0,0,0,0.127612712494584,0.10115778085555,0.464845549297286,0.62962469366128,0,0,0.532306030317022,0,0,0.143124886741991,0.372158369359667,0,0,0,0,0,0,0.179872457583315,0,0.235624804691373,0,0,0,0,0.487426979262569,0,0,0,0,0.551365343546124,0,0,0,0,0,0,0,0.286822704408103,0.88424136911809,0.35667105148125,0.709522128141196,0,0.329294892959902,0,0,0.0962221127255121,0,0,0,0,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0.961416640147258,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0.47748896947538,0,0,0,0,0.111308705022906,0,0,0,0,0,1.73856760253663,0,0.933118762985422,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0.227586896570999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27600463892768,0.183195186803725,1.06606955203727,0,0,0,0,0,0,0,0,0,0,1.13082457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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C3025 | |||
|description=CAGE_peak_at_chr10:54076479..54076496,+ | |||
|id=chr10:54076479..54076496,+ | |||
|ontology_enrichment_celltype=CL:0002620!9.48e-11!23;CL:0000057!2.04e-10!75;CL:0000055!7.51e-10!180;CL:0000548!1.47e-08!679;CL:0000004!1.47e-08!679;CL:0000255!1.47e-08!679;CL:0000012!2.52e-08!682 | |||
|ontology_enrichment_celltype_v019=CL:0002620;2.43e-13;23!CL:0002617;2.84e-11;2!CL:0002579;8.60e-08;3!CL:0002541;1.52e-07;3!CL:0000515;1.52e-07;3!CL:0002334;5.37e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,1.86e-13,23;CL:0002617,2.57e-11,2;CL:0000057,8.37e-09,76;CL:0002579,6.80e-08,3;CL:0002541,2.06e-07,3;CL:0002334,4.59e-07,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;3.13e-16;3!DOID:127;3.13e-16;3!DOID:0060072;2.67e-12;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,1.66e-16,3;DOID:127,1.66e-16,3;DOID:0060072,1.66e-12,4 | |||
|ontology_enrichment_uberon=UBERON:0002097!2.48e-08!40;UBERON:0003688!1.60e-07!6;UBERON:0002358!1.60e-07!6;UBERON:0003684!1.60e-07!6;UBERON:0001178!1.60e-07!6;UBERON:0002199!1.95e-07!45;UBERON:0002416!1.95e-07!45;UBERON:0004923!2.58e-07!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0000310;1.42e-08;10!UBERON:0003688;1.95e-08;6!UBERON:0002358;1.95e-08;6!UBERON:0003684;1.95e-08;6!UBERON:0001178;1.95e-08;6!UBERON:0001443;8.49e-08;11!UBERON:0003124;1.52e-07;3!UBERON:0000920;1.52e-07;3!UBERON:0002097;5.10e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,8.62e-09,41;UBERON:0000310,1.40e-08,10;UBERON:0003688,1.66e-08,6;UBERON:0002358,1.66e-08,6;UBERON:0003684,1.66e-08,6;UBERON:0001178,1.66e-08,6;UBERON:0001443,8.37e-08,11;UBERON:0002199,1.15e-07,46;UBERON:0002416,1.15e-07,46;UBERON:0000920,2.06e-07,3;UBERON:0003124,6.60e-07,7 | |||
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|short_description=p@chr10:54076479..54076496,+ | |||
}} |
Revision as of 13:39, 10 September 2013
Short description: | p@chr10:54076479..54076496, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr10:54076479..54076496, + |
Coexpression cluster: | C3025_Fibroblast_gastric_astrocytoma_glioblastoma_colon_Adipocyte_mesothelioma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 1.86e-13 | 23 |
adipocyte of breast | 2.57e-11 | 2 |
fibroblast | 8.37e-09 | 76 |
omentum preadipocyte | 6.80e-08 | 3 |
chorionic membrane mesenchymal stem cell | 2.06e-07 | 3 |
preadipocyte | 4.59e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
skin of body | 8.62e-09 | 41 |
breast | 1.40e-08 | 10 |
omentum | 1.66e-08 | 6 |
peritoneum | 1.66e-08 | 6 |
abdominal cavity | 1.66e-08 | 6 |
visceral peritoneum | 1.66e-08 | 6 |
chest | 8.37e-08 | 11 |
integument | 1.15e-07 | 46 |
integumental system | 1.15e-07 | 46 |
egg chorion | 2.06e-07 | 3 |
chorion | 6.60e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 1.66e-16 | 3 |
leiomyoma | 1.66e-16 | 3 |
benign neoplasm | 1.66e-12 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.