FFCP PHASE1:Hg19::chr10:116286656..116286693,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3983|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=78|TSSclassifier=S|UniProt=O14639,F6XFR5,B3KSG3,B3KVH2|association_with_transcript=0bp_to_ENST00000369266,ENST00000392952,ENST00000428430,NM_006720,uc009xyn.2,uc010qsf.1,uc010qsj.1_5end|description=CAGE_peak_1_at_ABLIM1_5end|id=chr10:116286656..116286693,-|ontology_enrichment_celltype=CL:0000791!7.15e-10!18;CL:0000789!7.15e-10!18;CL:0002420!7.15e-10!18;CL:0002419!7.15e-10!18;CL:0000790!7.15e-10!18;CL:0000223!1.01e-08!59;CL:0000542!1.04e-08!53;CL:0000051!1.04e-08!53;CL:0000838!1.23e-08!52;CL:0002076!8.17e-08!43;CL:0000084!6.21e-07!25;CL:0000827!6.21e-07!25|ontology_enrichment_celltype_v019=CL:0000791;3.36e-10;18!CL:0000789;3.36e-10;18!CL:0002419;3.36e-10;18!CL:0000084;5.94e-07;25!CL:0000625;6.27e-07;11!CL:0002076;7.17e-07;42|ontology_enrichment_celltype_v019_2=CL:0000791,3.30e-10,18;CL:0000789,3.30e-10,18;CL:0002420,3.30e-10,18;CL:0002419,3.30e-10,18;CL:0000790,3.30e-10,18;CL:0000223,7.83e-10,58;CL:0002076,8.81e-09,42;CL:0000542,1.29e-08,53;CL:0000051,1.29e-08,53;CL:0000838,1.54e-08,52;CL:0000084,5.66e-07,25;CL:0000827,5.66e-07,25;CL:0000625,6.24e-07,11|ontology_enrichment_development_v019=CL:0000790;3.36e-10;18!UBERON:0006595;3.75e-07;86|ontology_enrichment_disease=DOID:305!5.02e-11!106|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=DOID:305,7.94e-12,106|ontology_enrichment_uberon=UBERON:0007023!1.43e-23!115;UBERON:0004921!3.15e-10!129;UBERON:0004185!3.15e-10!129;UBERON:0001004!4.92e-10!72;UBERON:0001007!4.30e-09!155;UBERON:0001555!4.30e-09!155;UBERON:0007026!4.30e-09!155;UBERON:0004119!7.86e-09!169;UBERON:0000925!7.86e-09!169;UBERON:0006595!7.86e-09!169;UBERON:0000065!2.88e-08!53;UBERON:0001041!2.95e-08!98;UBERON:0000077!2.06e-07!130|ontology_enrichment_uberon_v019=UBERON:0007023;1.99e-07;114|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.57e-24,114;UBERON:0004921,1.25e-12,118;UBERON:0011216,2.71e-11,223;UBERON:0001007,4.33e-11,145;UBERON:0001555,4.33e-11,145;UBERON:0007026,4.33e-11,145;UBERON:0001041,4.74e-11,87;UBERON:0004119,1.96e-10,160;UBERON:0000925,1.96e-10,160;UBERON:0006595,1.96e-10,160;UBERON:0001004,6.10e-10,74;UBERON:0000065,3.93e-08,54;UBERON:0001048,1.31e-07,160|phase1_expression=0.181678379270557,1.07050261945492,1.40954404095971,0,0.446961094427288,0.872338524100369,0,0,2.08948502559871,2.45733936501509,6.28021051175185,0,0,0,0,0,0,0,0,7.87974771691443,1.22400414746552,6.58254915103984,0.286235987131057,0.136874425072884,0,5.11969818511273,5.58284008259631,3.85682828437028,15.3412067971073,24.9489108763188,9.44378352228064,11.0330546937471,7.53014796945625,20.7062245693401,18.5921281392724,6.82412315939623,4.69760702935756,9.97191735357379,13.8375668754398,16.9268479158364,1.11957737119962,6.47787332037959,0.257575567634187,1.45398238779565,4.1566353805769,2.18325655069035,3.25400651667958,6.16751832032739,3.71647645074124,2.8769239232215,5.89169625016932,4.02019790810595,3.7922024881028,7.10033151942209,2.70852973188684,2.07066573496865,9.5517152520246,3.37085226667627,4.28517449319264,11.5534449747394,3.83602275479425,1.64925650093358,4.78712778291916,2.55734850319616,3.19230162491442,4.53908179752912,2.4912889959823,4.77372463987812,7.82224377630302,4.77815458351257,6.65939452896706,8.47038562771399,5.37986058649504,0.422510572623884,0.212604299965044,0,0.112328631146495,0,0.16072558669708,0,0,0.365328307529268,10.5597746676794,11.4689108365048,8.00558328477199,10.6682555641627,8.40831572775626,10.3455439191807,10.5767179645578,10.494591299889,19.3532409497212,14.6809297342735,17.5845684937605,5.28685314316103,31.388479526966,1.58030450865046,114.878505746479,60.5236574633714,61.4748482008533,40.9606913707161,109.509881588886,78.5923357519657,68.189354942769,6.79603786999559,16.203324911116,9.52595746709571,15.9774279621359,9.60684897942564,10.0145697621106,7.89301942097645,11.6067007470056,25.7924746304197,213.977510642853,208.146764253797,162.030061897714,25.7212207923475,82.3924061244131,51.2004893769119,81.7253605222994,45.2362888340217,37.1117568698159,25.6622052001061,49.689789295665,60.5376670760399,36.2299107001803,41.672796359747,27.9183518953156,61.0868431970939,28.6161009488353,77.4810560772975,2.43806866313962,2.68280343881454,6.00954040664593,1.44575660953827,1.00267582127178,3.91085601194224,0,0.486634870302636,7.27918092163323,9.31263469342769,27.7557922790278,35.8882666863733,16.0289926848719,31.1458931938921,0.324547393654683,0.870648686496336,0.398873881556595,1.19245312152671,0.571994910780128,4.82894751728434,10.9319324051688,2.58070378531837,13.5384795626962,15.8286223738723,5.87299210693868,8.80377734208216,3.9709043641994,1.8089173141853,1.42306505074684,8.70273593188143,0.402829317109147,0,0.488124115096339,4.77962004449629,6.48113558305408,10.9838665789418,5.16417557040191,5.85579698513276,3.06633274931766,3.79706263827252,3.48083313467774,14.495845917967,15.511210565933,35.7597122756878,0,2.40597972162702,0.39722754243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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3983 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=78 | |||
|TSSclassifier=S | |||
|UniProt=O14639,F6XFR5,B3KSG3,B3KVH2 | |||
|association_with_transcript=0bp_to_ENST00000369266,ENST00000392952,ENST00000428430,NM_006720,uc009xyn.2,uc010qsf.1,uc010qsj.1_5end | |||
|description=CAGE_peak_1_at_ABLIM1_5end | |||
|id=chr10:116286656..116286693,- | |||
|ontology_enrichment_celltype=CL:0000791!7.15e-10!18;CL:0000789!7.15e-10!18;CL:0002420!7.15e-10!18;CL:0002419!7.15e-10!18;CL:0000790!7.15e-10!18;CL:0000223!1.01e-08!59;CL:0000542!1.04e-08!53;CL:0000051!1.04e-08!53;CL:0000838!1.23e-08!52;CL:0002076!8.17e-08!43;CL:0000084!6.21e-07!25;CL:0000827!6.21e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000791;3.36e-10;18!CL:0000789;3.36e-10;18!CL:0002419;3.36e-10;18!CL:0000084;5.94e-07;25!CL:0000625;6.27e-07;11!CL:0002076;7.17e-07;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,3.30e-10,18;CL:0000789,3.30e-10,18;CL:0002420,3.30e-10,18;CL:0002419,3.30e-10,18;CL:0000790,3.30e-10,18;CL:0000223,7.83e-10,58;CL:0002076,8.81e-09,42;CL:0000542,1.29e-08,53;CL:0000051,1.29e-08,53;CL:0000838,1.54e-08,52;CL:0000084,5.66e-07,25;CL:0000827,5.66e-07,25;CL:0000625,6.24e-07,11 | |||
|ontology_enrichment_development_v019=CL:0000790;3.36e-10;18!UBERON:0006595;3.75e-07;86 | |||
|ontology_enrichment_disease=DOID:305!5.02e-11!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,7.94e-12,106 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.43e-23!115;UBERON:0004921!3.15e-10!129;UBERON:0004185!3.15e-10!129;UBERON:0001004!4.92e-10!72;UBERON:0001007!4.30e-09!155;UBERON:0001555!4.30e-09!155;UBERON:0007026!4.30e-09!155;UBERON:0004119!7.86e-09!169;UBERON:0000925!7.86e-09!169;UBERON:0006595!7.86e-09!169;UBERON:0000065!2.88e-08!53;UBERON:0001041!2.95e-08!98;UBERON:0000077!2.06e-07!130 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;1.99e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.57e-24,114;UBERON:0004921,1.25e-12,118;UBERON:0011216,2.71e-11,223;UBERON:0001007,4.33e-11,145;UBERON:0001555,4.33e-11,145;UBERON:0007026,4.33e-11,145;UBERON:0001041,4.74e-11,87;UBERON:0004119,1.96e-10,160;UBERON:0000925,1.96e-10,160;UBERON:0006595,1.96e-10,160;UBERON:0001004,6.10e-10,74;UBERON:0000065,3.93e-08,54;UBERON:0001048,1.31e-07,160 | |||
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| |||
|short_description=p1@ABLIM1 | |||
}} |
Revision as of 11:52, 10 September 2013
Short description: | p1@ABLIM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_ABLIM1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000369266, ENST00000392952, ENST00000428430, NM_006720, uc009xyn.2, uc010qsf.1, uc010qsj.1_5end |
EntrezGene: | ABLIM1 |
HGNC: | 78 |
UniProt: | O14639F6XFR5B3KSG3B3KVH2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 3.30e-10 | 18 |
alpha-beta T cell | 3.30e-10 | 18 |
immature T cell | 3.30e-10 | 18 |
mature T cell | 3.30e-10 | 18 |
immature alpha-beta T cell | 3.30e-10 | 18 |
endodermal cell | 7.83e-10 | 58 |
endo-epithelial cell | 8.81e-09 | 42 |
lymphocyte | 1.29e-08 | 53 |
common lymphoid progenitor | 1.29e-08 | 53 |
lymphoid lineage restricted progenitor cell | 1.54e-08 | 52 |
T cell | 5.66e-07 | 25 |
pro-T cell | 5.66e-07 | 25 |
CD8-positive, alpha-beta T cell | 6.24e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.57e-24 | 114 |
subdivision of digestive tract | 1.25e-12 | 118 |
organ system subdivision | 2.71e-11 | 223 |
digestive system | 4.33e-11 | 145 |
digestive tract | 4.33e-11 | 145 |
primitive gut | 4.33e-11 | 145 |
foregut | 4.74e-11 | 87 |
endoderm-derived structure | 1.96e-10 | 160 |
endoderm | 1.96e-10 | 160 |
presumptive endoderm | 1.96e-10 | 160 |
respiratory system | 6.10e-10 | 74 |
respiratory tract | 3.93e-08 | 54 |
primordium | 1.31e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 7.94e-12 | 106 |
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