NonredundantMotifs:90: Difference between revisions
From FANTOM5_SSTAR
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|entrez_gene_id=54345
|motif_cluster_2013_march_motif_members= /JASPAR:MA0158.1;HOXA5 /HOCOMOCO:HMGA1_f1 /UNIPROBE:Sox18_secondary;SCI09
|name=known90
|re...") |
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{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;0.233450161931124;0.135590748126185;0.449351229829624;0.181607860113066!2;0.164158621021835;0.195257256960119;0.355715042107995;0.28486907991005!3;0.366008364849163;0.174902145183285;0.291705061060094;0.167384428907458!4;0.111203865824073;0.386494011729303;0.313801850275578;0.188500272171046!5;0.0377720364100832;0.262982803148603;0.150188960462521;0.549056199978793!6;0.361570043267775;0.0403309702835046;0.45293692438112;0.1451620620676!7;0.644866690990704;0.179213984596252;0.0740700260595928;0.101849298353451!8;0.847542974271445;0.0236931753055282;0.0668939485329133;0.0618699018901137!9;0.0618699018901137;0.0668939485329133;0.0236931753055282;0.847542974271445!10;0.101849298353451;0.0740700260595928;0.179213984596252;0.644866690990704!11;0.1451620620676;0.45293692438112;0.0403309702835046;0.361570043267775!12;0.549056199978793;0.150188960462521;0.262982803148603;0.0377720364100832!13;0.256652811095245;0.170744553271165;0.197090601320515;0.375512034313075!14;0.288178367412808;0.121185313915577;0.335591883029961;0.255044435641654!15;0.284269889440176;0.341601752851283;0.127009156621074;0.247119201087467!16;0.288580448711648;0.309961332453298;0.22276547958401;0.178692739251044 | |||
|entrez_gene_id=54345 | |entrez_gene_id=54345 | ||
|motif_cluster_2013_march_motif_members= /JASPAR:MA0158.1;HOXA5 | |motif_cluster_2013_march_motif_members= /HOCOMOCO:HMGA1_f1 /JASPAR:MA0158.1;HOXA5 /UNIPROBE:Sox18_secondary;SCI09 | ||
|name= | |name=non-redundant90 | ||
|representative_motif_db=UNIPROBE | |representative_motif_db=UNIPROBE | ||
|representative_motif_id=Sox18_secondary | |representative_motif_id=Sox18_secondary | ||
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[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant90
- db :UNIPROBE
- Id :Sox18_secondary
- name :SCI09
- score :0.010437874414759556
- External refs:
- Internal refs:
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Sub Motif Members
