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MCL coexpression mm9:3281: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0005409!1.67e-11!47;UBERON:0009854!3.09e-11!23;UBERON:0009856!3.09e-11!23;UBERON:0002107!1.05e-10!22;UBERON:0007499!1.05e-10!22;UBERON:0006925!1.05e-10!22;UBERON:0009497!1.05e-10!22;UBERON:0000015!1.05e-10!22;UBERON:0002423!1.05e-10!22;UBERON:0006235!1.05e-10!22;UBERON:0008835!1.05e-10!22;UBERON:0003894!1.05e-10!22;UBERON:0004161!1.05e-10!22;UBERON:0008836!1.05e-10!22;UBERON:0005172!1.64e-10!49;UBERON:0005173!1.64e-10!49;UBERON:0002417!1.64e-10!49;UBERON:0000916!1.64e-10!49;UBERON:0000160!6.66e-10!31;UBERON:0005177!8.46e-09!79;UBERON:0004119!3.38e-08!118;UBERON:0000925!3.38e-08!118;UBERON:0006595!3.38e-08!118;UBERON:0009569!3.94e-08!66;UBERON:0002365!7.35e-08!25;UBERON:0002330!7.35e-08!25;UBERON:0001007!1.30e-07!116;UBERON:0001555!1.30e-07!116;UBERON:0007026!1.30e-07!116;UBERON:0002100!2.11e-07!90;UBERON:0004921!5.67e-07!114
|ontology_enrichment_uberon=UBERON:0005409!1.67e-11!47;UBERON:0009854!3.09e-11!23;UBERON:0009856!3.09e-11!23;UBERON:0002107!1.05e-10!22;UBERON:0007499!1.05e-10!22;UBERON:0006925!1.05e-10!22;UBERON:0009497!1.05e-10!22;UBERON:0000015!1.05e-10!22;UBERON:0002423!1.05e-10!22;UBERON:0006235!1.05e-10!22;UBERON:0008835!1.05e-10!22;UBERON:0003894!1.05e-10!22;UBERON:0004161!1.05e-10!22;UBERON:0008836!1.05e-10!22;UBERON:0005172!1.64e-10!49;UBERON:0005173!1.64e-10!49;UBERON:0002417!1.64e-10!49;UBERON:0000916!1.64e-10!49;UBERON:0000160!6.66e-10!31;UBERON:0005177!8.46e-09!79;UBERON:0004119!3.38e-08!118;UBERON:0000925!3.38e-08!118;UBERON:0006595!3.38e-08!118;UBERON:0009569!3.94e-08!66;UBERON:0002365!7.35e-08!25;UBERON:0002330!7.35e-08!25;UBERON:0001007!1.30e-07!116;UBERON:0001555!1.30e-07!116;UBERON:0007026!1.30e-07!116;UBERON:0002100!2.11e-07!90;UBERON:0004921!5.67e-07!114
|tfbs_overrepresentation_for_novel_motifs=0.752782,0.193418,0.722405,0.801166,0.587814,0.81763,0.919454,0.467321,1.20566,0.235304,0.870507,0.906098,1.18012,0.933025,0.608226,0,1.14208,0.578045,1.138,0.328717,0.679146,0.275782,0.932027,0.585919,0.731217,0.963352,0.437236,0.841386,0.64294,0.380786,1.9291,1.24901,0.575271,0.411696,2.51624,0.144706,0.563758,0.902078,0.536514,0.50014,0.582863,0.831295,0.724277,0.610669,0.474221,0.788421,1.05665,0.859154,0.235354,0.646474,1.12346,0.99279,0.371606,1.3966,1.41464,0.940919,0.657156,0.891887,0.425455,0.938668,1.22795,1.00308,0.494668,1.11142,0.953187,1.15459,1.55483,1.90983,1.22303,1.7608,1.6706,0.474956,0.284975,1.44925,0.416814,0.402065,0.411601,2.37627,1.20986,0.684144,0.476502,1.16055,1.00151,1.16164,1.32978,0.181575,0.195254,0.380977,1.06194,2.07346,1.62608,1.33496,1.26245,0.595071,0.531443,0.509215,0.464141,1.26539,1.05692,0.352122,0.563856,1.24872,1.37854,1.12409,1.12297,0.830796,1.18646,0.854628,0.689894,0.681267,0.744607,1.38039,0.685481,0.876299,1.63327,0.580657,1.79445,0.805461,1.14346,0.559153,1.45481,1.08896,0.965352,1.04338,1.68841,1.21376,0.928483,1.25534,1.55328,0.598722,1.36093,0.792832,1.52297,0.955954,1.65529,0.273451,0.762499,0.832891,1.60513,2.44352,2.04137,1.55966,0.978551,1.26,1.11604,0.831808,1.06002,2.40374,0.765221,2.45536,0.38417,0.260379,1.39822,0.516739,0.954936,1.48249,0.993889,0.622823,0.749933,0.762177,1.61484,4.74928,1.21423,0.741984,1.11251,0.94678,0.562367,0.904334,1.34909
}}
}}

Revision as of 22:40, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr1:74437990..74438051,+p3@Ctdsp1
Mm9::chr1:74438053..74438069,+p6@Ctdsp1
Mm9::chr1:74438151..74438168,+p8@Ctdsp1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
gastrointestinal system1.67e-1147
digestive tract diverticulum3.09e-1123
sac3.09e-1123
liver1.05e-1022
epithelial sac1.05e-1022
digestive gland1.05e-1022
epithelium of foregut-midgut junction1.05e-1022
anatomical boundary1.05e-1022
hepatobiliary system1.05e-1022
foregut-midgut junction1.05e-1022
hepatic diverticulum1.05e-1022
liver primordium1.05e-1022
septum transversum1.05e-1022
liver bud1.05e-1022
abdomen element1.64e-1049
abdominal segment element1.64e-1049
abdominal segment of trunk1.64e-1049
abdomen1.64e-1049
intestine6.66e-1031
trunk region element8.46e-0979
endoderm-derived structure3.38e-08118
endoderm3.38e-08118
presumptive endoderm3.38e-08118
subdivision of trunk3.94e-0866
exocrine gland7.35e-0825
exocrine system7.35e-0825
digestive system1.30e-07116
digestive tract1.30e-07116
primitive gut1.30e-07116
trunk2.11e-0790
subdivision of digestive tract5.67e-07114


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}