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MCL coexpression mm9:84: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000007!6.68e-44!8;UBERON:0003296!6.68e-44!8;UBERON:0010133!6.68e-44!8;UBERON:0001894!2.37e-35!10;UBERON:0006222!2.37e-35!10;UBERON:0002780!9.26e-10!39;UBERON:0001890!9.26e-10!39;UBERON:0006240!9.26e-10!39;UBERON:0003080!1.55e-09!40;UBERON:0002616!2.15e-08!46;UBERON:0000955!3.12e-08!47;UBERON:0006238!3.12e-08!47;UBERON:0003056!6.29e-08!49;UBERON:0001049!1.63e-07!52;UBERON:0005068!1.63e-07!52;UBERON:0006241!1.63e-07!52;UBERON:0007135!1.63e-07!52;UBERON:0000073!2.91e-07!54
|ontology_enrichment_uberon=UBERON:0000007!6.68e-44!8;UBERON:0003296!6.68e-44!8;UBERON:0010133!6.68e-44!8;UBERON:0001894!2.37e-35!10;UBERON:0006222!2.37e-35!10;UBERON:0002780!9.26e-10!39;UBERON:0001890!9.26e-10!39;UBERON:0006240!9.26e-10!39;UBERON:0003080!1.55e-09!40;UBERON:0002616!2.15e-08!46;UBERON:0000955!3.12e-08!47;UBERON:0006238!3.12e-08!47;UBERON:0003056!6.29e-08!49;UBERON:0001049!1.63e-07!52;UBERON:0005068!1.63e-07!52;UBERON:0006241!1.63e-07!52;UBERON:0007135!1.63e-07!52;UBERON:0000073!2.91e-07!54
|tfbs_overrepresentation_for_novel_motifs=0.192068,0.0189241,0.00294593,0.594255,0.736243,0.229617,0.00511781,0.932512,1.05798,0.0458021,0.0105005,0.183503,0.0109636,0.000843902,0.2509,0,0.0507427,1.81357,0.011254,0.424527,1.73133,0.0680323,0.125979,0.129503,0.152405,0.442147,1.95624,0.281326,0.0457539,0.826434,0.0851132,0.252864,0.110086,0.235758,0.000666028,2.07683e-06,3.87802e-05,0.291966,0.965102,6.06653e-05,0.444317,0.160935,0.237639,1.49691,0.0369515,0.00284435,0.308718,0.472373,0.291056,1.18719,0.256234,0.343591,0.135939,0.0591355,1.80407,1.03253,2.30142,0.162688,0.793003,0.0642899,0.0206521,0.113479,1.22374,0.00760783,0.0738103,4.5281,0.380888,0.887271,1.02253,0.232452,0.0147565,0.0134716,7.58737e-08,0.264762,2.08633e-07,0.0363233,0.781792,0.286523,0.975052,1.07376,0.404226,0.0119852,1.70748,0.0424078,0.0407696,1.69778e-09,1.7239e-05,0.0301785,0.0259112,0.459155,0.154721,0.162505,0.502505,0.390812,1.81703e-06,0.00964254,0.339392,0.273555,0.00429696,2.50813,0.1371,0.10298,1.17224,0.68965,0.443747,0.0182873,0.0149239,0.115263,0.0122265,0.0817313,0.108442,0.200054,0.708663,0.0328349,0.478968,0.17519,0.000598373,1.02217,0.750339,1.37213,0.965053,0.208423,0.447612,0.284792,1.05445,0.667718,2.25256,0.0251799,0.119067,0.00988285,2.65434,0.0582598,0.105647,0.268631,0.979596,0.000381564,0.132977,0.547898,0.442713,0.779721,0.433535,0.122,1.23344,0.109878,0.041413,0.161721,1.35263,0.743537,0.452902,0.0169687,0.099931,3.47047e-10,0.0596353,0.0603789,0.0750167,4.17339,0.529292,0.400015,0.115407,0.00173211,0.14891,0.361671,0.0835361,0.0291396,0.240464,0.398231,0.454524,0.447625,0.0318579
}}
}}

Revision as of 17:46, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:117549570..117549587,+p@chr10:117549570..117549587
+
Mm9::chr10:12780191..12780206,-p@chr10:12780191..12780206
-
Mm9::chr10:12780231..12780238,-p@chr10:12780231..12780238
-
Mm9::chr10:12780335..12780344,+p12@Plagl1
Mm9::chr10:12780505..12780529,+p10@Plagl1
Mm9::chr10:55944786..55944790,+p@chr10:55944786..55944790
+
Mm9::chr11:106161617..106161686,-p@chr11:106161617..106161686
-
Mm9::chr11:106161619..106161650,+p@chr11:106161619..106161650
+
Mm9::chr11:106161652..106161682,+p@chr11:106161652..106161682
+
Mm9::chr11:106161688..106161710,-p@chr11:106161688..106161710
-
Mm9::chr11:106161701..106161704,+p@chr11:106161701..106161704
+
Mm9::chr11:106161714..106161723,-p@chr11:106161714..106161723
-
Mm9::chr11:106161784..106161839,+p@chr11:106161784..106161839
+
Mm9::chr11:106161787..106161792,-p@chr11:106161787..106161792
-
Mm9::chr11:106161814..106161832,-p@chr11:106161814..106161832
-
Mm9::chr11:106161842..106161880,-p@chr11:106161842..106161880
-
Mm9::chr11:106162089..106162093,+p@chr11:106162089..106162093
+
Mm9::chr11:106162094..106162117,+p@chr11:106162094..106162117
+
Mm9::chr11:106162124..106162125,-p@chr11:106162124..106162125
-
Mm9::chr11:106162129..106162134,-p@chr11:106162129..106162134
-
Mm9::chr11:106162136..106162156,-p@chr11:106162136..106162156
-
Mm9::chr11:106162158..106162204,-p@chr11:106162158..106162204
-
Mm9::chr11:106162161..106162168,+p@chr11:106162161..106162168
+
Mm9::chr11:106162210..106162243,-p@chr11:106162210..106162243
-
Mm9::chr11:106162483..106162501,+p@chr11:106162483..106162501
+
Mm9::chr11:106162491..106162507,-p@chr11:106162491..106162507
-
Mm9::chr11:106162514..106162530,-p@chr11:106162514..106162530
-
Mm9::chr11:106162697..106162723,+p@chr11:106162697..106162723
+
Mm9::chr11:106162749..106162774,-p@chr11:106162749..106162774
-
Mm9::chr11:106162784..106162791,+p@chr11:106162784..106162791
+
Mm9::chr11:106162842..106162853,-p@chr11:106162842..106162853
-
Mm9::chr11:106162861..106162875,-p@chr11:106162861..106162875
-
Mm9::chr11:106163115..106163130,-p1@Gh
Mm9::chr11:22679310..22679315,-p@chr11:22679310..22679315
-
Mm9::chr11:60289788..60289803,+p@chr11:60289788..60289803
+
Mm9::chr11:65874808..65874817,-p@chr11:65874808..65874817
-
Mm9::chr11:77693081..77693097,+p@chr11:77693081..77693097
+
Mm9::chr12:110853720..110853736,-p@chr12:110853720..110853736
-
Mm9::chr12:12857520..12857529,-p@chr12:12857520..12857529
-
Mm9::chr12:30215972..30216008,-p1@uc007ngc.1
Mm9::chr12:32555447..32555451,+p@chr12:32555447..32555451
+
Mm9::chr12:3954943..3954957,+p1@Pomc
Mm9::chr12:59103731..59103754,+p@chr12:59103731..59103754
+
Mm9::chr12:74750260..74750280,+p@chr12:74750260..74750280
+
Mm9::chr13:27149440..27149453,+p1@Prl
Mm9::chr13:27149470..27149480,+p2@Prl
Mm9::chr13:27151251..27151260,+p@chr13:27151251..27151260
+
Mm9::chr13:27151301..27151308,+p@chr13:27151301..27151308
+
Mm9::chr13:27151367..27151376,+p@chr13:27151367..27151376
+
Mm9::chr13:27153396..27153407,+p@chr13:27153396..27153407
+
Mm9::chr13:27156213..27156225,+p@chr13:27156213..27156225
+
Mm9::chr13:27157011..27157017,+p@chr13:27157011..27157017
+
Mm9::chr13:55014587..55014588,+p3@ENSMUST00000154615
Mm9::chr13:55014590..55014601,+p1@ENSMUST00000154615
Mm9::chr13:55014610..55014611,+p4@ENSMUST00000154615
Mm9::chr13:99870653..99870674,+p1@ENSMUST00000099271
p1@uc007rpk.1
Mm9::chr14:37587682..37587687,-p@chr14:37587682..37587687
-
Mm9::chr15:30934527..30934553,+p13@Ctnnd2
Mm9::chr15:73190865..73190881,-p@chr15:73190865..73190881
-
Mm9::chr15:92915843..92915850,-p@chr15:92915843..92915850
-
Mm9::chr15:97600620..97600631,-p@chr15:97600620..97600631
-
Mm9::chr15:97600641..97600663,-p@chr15:97600641..97600663
-
Mm9::chr15:99468218..99468227,-p4@Racgap1
Mm9::chr15:99468236..99468247,-p3@Racgap1
Mm9::chr15:99522649..99522660,+p3@Accn2
Mm9::chr16:23257005..23257026,+p@chr16:23257005..23257026
+
Mm9::chr16:65523906..65523918,+p@chr16:65523906..65523918
+
Mm9::chr16:65534318..65534330,+p@chr16:65534318..65534330
+
Mm9::chr16:65534337..65534346,+p@chr16:65534337..65534346
+
Mm9::chr16:72083353..72083356,+p@chr16:72083353..72083356
+
Mm9::chr16:86358436..86358442,-p@chr16:86358436..86358442
-
Mm9::chr16:9150948..9150952,-p@chr16:9150948..9150952
-
Mm9::chr17:25940337..25940350,+p@chr17:25940337..25940350
+
Mm9::chr17:34056001..34056008,+p22@Tapbp
Mm9::chr17:52742025..52742042,+p5@Kcnh8
Mm9::chr17:52896416..52896418,+p@chr17:52896416..52896418
+
Mm9::chr18:60795823..60795828,+p@chr18:60795823..60795828
+
Mm9::chr18:65857907..65857931,+p1@5330437I02Rik
Mm9::chr19:10478471..10478486,+p@chr19:10478471..10478486
+
Mm9::chr19:53927404..53927413,+p@chr19:53927404..53927413
+
Mm9::chr1:157077259..157077273,-p@chr1:157077259..157077273
-
Mm9::chr1:157077321..157077330,-p@chr1:157077321..157077330
-
Mm9::chr1:160888300..160888311,-p1@Pappa2
Mm9::chr1:160961090..160961100,-p@chr1:160961090..160961100
-
Mm9::chr1:190858662..190858674,+p@chr1:190858662..190858674
+
Mm9::chr1:194660751..194660752,-p1@ENSMUST00000057543
Mm9::chr1:75435802..75435813,+p@chr1:75435802..75435813
+
Mm9::chr1:95114042..95114044,+p@chr1:95114042..95114044
+
Mm9::chr2:106897477..106897480,-p@chr2:106897477..106897480
-
Mm9::chr2:106899136..106899137,-p@chr2:106899136..106899137
-
Mm9::chr2:106899803..106899815,-p1@Fshb
Mm9::chr2:157387211..157387221,+p@chr2:157387211..157387221
+
Mm9::chr2:174675488..174675494,-p@chr2:174675488..174675494
-
Mm9::chr2:174678719..174678724,-p5@ENSMUST00000149377
Mm9::chr2:174678745..174678752,-p3@ENSMUST00000149377
Mm9::chr2:174678782..174678802,-p1@ENSMUST00000149377
Mm9::chr2:174678804..174678811,-p4@ENSMUST00000149377
Mm9::chr2:174678856..174678860,-p2@ENSMUST00000149377
Mm9::chr2:178362498..178362505,-p@chr2:178362498..178362505
-
Mm9::chr2:178362512..178362530,-p@chr2:178362512..178362530
-
Mm9::chr2:30510391..30510400,+p@chr2:30510391..30510400
+
Mm9::chr3:58614474..58614492,-p@chr3:58614474..58614492
-
Mm9::chr3:84841876..84841878,-p@chr3:84841876..84841878
-
Mm9::chr3:95838168..95838175,-p@chr3:95838168..95838175
-
Mm9::chr4:150943126..150943160,-p@chr4:150943126..150943160
-
Mm9::chr4:34840978..34840987,+p3@Cga
Mm9::chr4:34841000..34841008,+p4@Cga
Mm9::chr4:34841021..34841036,+p1@Cga
Mm9::chr4:34841043..34841065,+p2@Cga
Mm9::chr4:34852398..34852407,+p@chr4:34852398..34852407
+
Mm9::chr4:68248939..68248946,+p@chr4:68248939..68248946
+
Mm9::chr4:94143858..94143898,-p1@ENSMUST00000127678
p1@ENSMUST00000133884
p1@uc008trz.1
Mm9::chr4:98103495..98103511,+p12@Inadl
Mm9::chr5:118487983..118487997,+p@chr5:118487983..118487997
+
Mm9::chr5:118488029..118488037,+p@chr5:118488029..118488037
+
Mm9::chr5:129410127..129410141,-p@chr5:129410127..129410141
-
Mm9::chr5:20207947..20208032,+p3@Magi2
Mm9::chr5:37482313..37482324,+p@chr5:37482313..37482324
+
Mm9::chr5:86626872..86626881,-p3@Gnrhr
Mm9::chr5:86626906..86626920,-p1@Gnrhr
Mm9::chr5:86626950..86626960,-p2@Gnrhr
Mm9::chr6:112643587..112643598,-p@chr6:112643587..112643598
-
Mm9::chr7:112717893..112717907,+p@chr7:112717893..112717907
+
Mm9::chr7:136975437..136975441,+p@chr7:136975437..136975441
+
Mm9::chr7:52676276..52676284,+p3@Lhb
Mm9::chr7:52676309..52676316,+p2@Lhb
Mm9::chr7:76005128..76005135,+p@chr7:76005128..76005135
+
Mm9::chr7:86030505..86030537,+p@chr7:86030505..86030537
+
Mm9::chr8:4248188..4248219,+p2@Gm14378
Mm9::chr8:4248223..4248241,+p3@Gm14378
Mm9::chr8:4248248..4248267,+p1@Gm14378
Mm9::chr8:4249457..4249459,+p@chr8:4249457..4249459
+
Mm9::chr8:4250307..4250319,+p4@Gm14378
Mm9::chr8:94583590..94583594,-p@chr8:94583590..94583594
-
Mm9::chr8:9702589..9702592,-p@chr8:9702589..9702592
-
Mm9::chr9:112407509..112407516,+p@chr9:112407509..112407516
+
Mm9::chr9:44754012..44754020,-p@chr9:44754012..44754020
-
Mm9::chr9:50693593..50693603,+p@chr9:50693593..50693603
+
Mm9::chr9:75221009..75221059,-p@chr9:75221009..75221059
-
Mm9::chr9:7556270..7556278,-p@chr9:7556270..7556278
-
Mm9::chr9:7572741..7572752,-p@chr9:7572741..7572752
-
Mm9::chr9:7593439..7593443,-p@chr9:7593439..7593443
-
Mm9::chr9:7604109..7604118,-p@chr9:7604109..7604118
-
Mm9::chr9:7604127..7604130,-p@chr9:7604127..7604130
-
Mm9::chr9:7604145..7604167,-p@chr9:7604145..7604167
-
Mm9::chr9:77247115..77247160,-p1@5730403I07Rik
Mm9::chrX:135891273..135891283,-p4@C330013F16Rik
Mm9::chrX:18796273..18796278,-p@chrX:18796273..18796278
-
Mm9::chrX:47151047..47151077,-p3@Igsf1
Mm9::chrX:54307057..54307085,+p2@Htatsf1
Mm9::chrX:91705113..91705115,-p@chrX:91705113..91705115
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0005179hormone activity1.55673854052896e-06
GO:0005102receptor binding0.000667694344920263
GO:0030141secretory granule0.00139708723143257
GO:0040018positive regulation of multicellular organism growth0.0265181819214404
GO:0045927positive regulation of growth0.0297602743015208
GO:0005126hematopoietin/interferon-class (D200-domain) cytokine receptor binding0.0340312509722374
GO:0032962positive regulation of inositol trisphosphate biosynthetic process0.0340312509722374
GO:0032958inositol phosphate biosynthetic process0.0340312509722374
GO:0032960regulation of inositol trisphosphate biosynthetic process0.0340312509722374
GO:0032959inositol trisphosphate biosynthetic process0.0340312509722374
GO:0004968gonadotropin-releasing hormone receptor activity0.0340312509722374
GO:0016023cytoplasmic membrane-bound vesicle0.0340312509722374
GO:0031988membrane-bound vesicle0.0340312509722374
GO:0007612learning0.0340312509722374
GO:0019717synaptosome0.0340312509722374
GO:0040014regulation of multicellular organism growth0.0340312509722374
GO:0008283cell proliferation0.0340312509722374
GO:0006021inositol biosynthetic process0.0340312509722374
GO:0005148prolactin receptor binding0.0340312509722374
GO:0043647inositol phosphate metabolic process0.0340312509722374
GO:0032957inositol trisphosphate metabolic process0.0340312509722374
GO:0005131growth hormone receptor binding0.0340312509722374
GO:0060133somatotropin secreting cell development0.0340312509722374
GO:0035264multicellular organism growth0.0340312509722374
GO:0007611learning and/or memory0.0404508747914723
GO:0060126somatotropin secreting cell differentiation0.0404508747914723
GO:0007262STAT protein nuclear translocation0.0404508747914723
GO:0001101response to acid0.0404508747914723
GO:0033143regulation of steroid hormone receptor signaling pathway0.0404508747914723
GO:0043567regulation of insulin-like growth factor receptor signaling pathway0.0404508747914723
GO:0060011Sertoli cell proliferation0.0466662557784434
GO:0045913positive regulation of carbohydrate metabolic process0.0466662557784434
GO:0050811GABA receptor binding0.0466662557784434
GO:0043255regulation of carbohydrate biosynthetic process0.0466662557784434
GO:0031410cytoplasmic vesicle0.0466662557784434
GO:0005515protein binding0.0466662557784434
GO:0031982vesicle0.0474248118340476



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
pituitary gland6.68e-448
gland of diencephalon6.68e-448
neuroendocrine gland6.68e-448
diencephalon2.37e-3510
future diencephalon2.37e-3510
regional part of forebrain9.26e-1039
forebrain9.26e-1039
future forebrain9.26e-1039
anterior neural tube1.55e-0940
regional part of brain2.15e-0846
brain3.12e-0847
future brain3.12e-0847
pre-chordal neural plate6.29e-0849
neural tube1.63e-0752
neural rod1.63e-0752
future spinal cord1.63e-0752
neural keel1.63e-0752
regional part of nervous system2.91e-0754


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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