Personal tools

Coexpression cluster:C3731: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 8: Line 8:
|tf_chipseq_enrich=E2F1#1869;3:4.90738921487932:0.00846098534723939:0.0325160747968919!FOXA2#3170;2:16.4203091684435:0.00481068235210548:0.0225868932823028!TRIM28#10155;2:12.3936833635083:0.00836834412943847:0.0329071686635199
|tf_chipseq_enrich=E2F1#1869;3:4.90738921487932:0.00846098534723939:0.0325160747968919!FOXA2#3170;2:16.4203091684435:0.00481068235210548:0.0225868932823028!TRIM28#10155;2:12.3936833635083:0.00836834412943847:0.0329071686635199
|tfbs_overrepresentation=0.147255,0.0586687,0.716932,0.0477154,0.199763,0.287811,0.0430074,0.414564,0.03272,0.0257057,0.139423,0.225367,0.188771,0.125978,0.148679,0.0619003,0.140982,0.0982016,0.0528514,0.108057,0.188635,0.132577,0.081977,0.0948982,0.0415721,0.0250931,0.209392,0.00424558,0.143747,0.0933697,0.204953,0.114046,0.0180314,0.208242,0.0665252,0.0844722,0.324808,0.0429682,0.00755159,0.0667043,0.0964797,0.0246116,0.140039,0.184019,0.120917,0.0362416,0.0380166,0.0175714,0.111283,0.121201,0.154071,0.00149495,0.0701653,0.0929951,0.00153794,0.0384161,0.107455,0.212709,0.0783235,0.105572,0.0294301,0.149417,0.108602,0.0759481,0.054569,0.0504887,0.0709764,0.0600088,0.0860723,0.167053,0.0126543,0.067678,0.089036,0.119383,0.00747605,0.0171177,0.0964936,0.0436945,0.0372495,0.00725252,0.00472557,0.226912,0.0425,0.114846,0.0472875,0.251834,0.064341,0.209032,0.608896,0.062747,0.0857568,0.0495878,0.0953825,0.0473737,0.0853887,0.00688504,0.0594776,0.153631,0.0927458,0.0415725,0.0574857,0.276221,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.0649715,0.144217,0.269326,0.182599,0.0339971,0.149552,0.0176855,0.101221,0.0337525,0.0203386,0.0566549,0.0101452,0.0838393,0.16671,0.214708,0.140123,0.0857827,0.102368,0.0166632,0.0906875,0.0147934,0.0843604,0.134932,0.0595773,0.0748346,0.0572164,0.0227861,0.125792,0.108101,0.0648644,0.0553359,0.0330399,0.00395526,0.022776,0.0085119,0.203923,0.155998,0.0641358,0.0693171,0.0988228,0.0842275,0.0389418,0.120833,0.200647,0.143677,0.180712,0.0265818,0.0427088,0.117549,0.0747594,0.228385,0.0516985,0.0337251,0.0281563,0.0952829,0.116642,0.147788,0.273479,0.114283,0.0400322,0.127369,0.0403542,0.312091,0.0172085,1.78489e-05,0.12972,0.0541353,0.0799324,0.090079,0.140334,0.181817,0.178449,0.0356339,0.158844,0.122474,0.0274061,0.115574,0.0737247,0.118847,0.183031,0.0401756,0.0828697,0.173562,0.107145,0.187297,0.122935,0.0284396,0.112671,0.0470731,0.0782523,0.0602859,0.0676496,0.109673,0.0893019,0.060398,0.0308319,0.0606036,0.136451,0.259411,0.27358,0.15185,0.206299,0.0169462,0.0458667,0.104357,0.121154,0.1129,0.312578,0.169057,0.164202,0.00527533,0.062995,0.10299,0.14193,0.0119362,0.15606,0.161026,0.0738599,0.126611,0.0101199,0.085973,0.060453,0.059896,0.569726,0.0859236,0.0418404,0.0765029,0.0959204,0.0931946,0.0472272,0.263087,0.163502,0.214803,0.182472,0.348993,0.00500828,0.00355194,0.116283,0.136838,0.0815104,0.00647842,0.0802194,0.117027,0.159052,0.185164,0.185743,0.0980288,0.0980899,0.159674,0.107242,0.201859,0.0695832,0.582402,0.0619218,0.1751,0.163376,0.128096,0.0345133,0.0810678,0.0811639,0.0920653,0.118078,0.0755168,0.278352,0.063292,0.254773,0.446759,0.0865903,0.0380459,0.130174,0.219944,0.355018,0.0691572,0.019623,0.0101922,0.00879988,0.807281,0.00083951,0.0790073,0.261553,0.446302,0.0806291,0.00641099,0.147559,0.330703,0.395854,0.00791734,0.00116194,0.248224,0.00420832,0.00531795,0.0159894,0.0148713,0.0121013,0.000362379,0.187251,0.0756284,0.181715,0.423979,0.00628346,0.330894,0.218329,0.427027,0.376924,0.129235,0.280025,0.173877,0.168255,0.0117562,0.101703,0.142924,0.253571,0.00445889,0.0509673,0.00462582,0.316882,0.0270783,0.0340949,0.236436,0.0447111,0.0557438,0.577664,0.0474194,0.120054,0.0563639,0.416816,0.00535876,0.476744,0.115044,0.373868,0.57762,0.608919,0.017744,0.706298,0.513427,0.161148,0.275351,0.00267743,0.185661,0.346319,0.000147221,0.270984,0.258117,0.155555,0.513852,0.0389686,0.0338468,0.281576,0.472384,0.163244,0.0670502,0.0730934,0.184794,0.230427,0.0158541,0.217247,0.1002,0.00570056,0.0462094,0.00915612,0.448039,0.218623,0.312808,0.117923,0.0451077,0.0747529,0.229003,0.28275,0.589326,0.50215,0.0054714,0.00907354,0.0282052,0.289204,0.0077225,0.319027,0.278044,0.0263998,0.428671,0.228096,0.0642385,0.0209597,0.15631,0.567452,0.421464,0.141711,0.420626,0.516462,0.858756,0.335105,0.144809,0.145539,0.385517,0.376191,0.447325,0.0247309,0.252232,0.152681,0.0465712,0.137098,0.259235,0.134788,0.00502762,0.18767,0.293698,0.284593,0.343734,0.0526965,0.0524121,0.601433,0.00573447,0.00696513,0.0450125,0.262537,0.359455,0.226257,0.0965765,0.41707,0.363685,0.130283,0.166672,0.206222,0.171685,0.0224921,0.437176,0.269226,0.339277,0.0479524,0.281425,0.0105593,0.124432,0.520495,0.159617,0.238587,0.0119179,0.232251,0.189515,0.0891382,0.0595618,0.171389,0.625309,0.347298,0.182325,0.0699395,0.136757,0.0958562,0.6408,0.630264,0.316179,0.0697683,4.28879e-07,0.192544,0.00312417,0.0575676,0.144322,0.223391,0.203656,0.442884,0.441735,0.191777,0.111931,0.28934,0.0435386,0.0515253,0.126478,0.134852,0.10689,0.273326,0.0627924,0.381386,0.0179103,0.0517437,0.0434097,0.0886747,0.0464827,0.169603,0.114583,0.104559,0.0899537,0.0866966,0.0135136,0.107111,0.0438639,0.00389058,0.123593,0.129156,0.210369,0.193675,0.0684384,0.0499762,0.0828956,0.0666953,0.182185,0.111277,0.219383,0.062811,0.0205132,0.00915124,0.188694,0.0481795,0.199971,0.00202975,0.127758,0.0164446,0.184486,0.169234,0.0876426,0.0952322,0.0112557,0.0268081,0.107043,0.275244,0.00481323,0.173708,0.141119,0.0241568,0.0300692,0.131551,0.0445237,0.052362,0.208866,0.153187,0.0797897,0.0974211,0.160149,0.123526,0.0906475,0.0558058,0.0443426,0.517717,0.137332,0.0145999,0.0656973,0.211746,0.220538,0.0801488,0.0757897,0.161801,0.193215,0.00153556,0.0779715,0.0561838,0.0417636,0.0345419,0.0388736,0.254674,0.170307,0.201033,0.0488949,0.016278,0.370421,0.0330727,0.348757,0.02609,0.0394698,0.0596469,0.419264,0.122476,0.108872,0.11002,0.26144,0.0286025,0.549354,0.144567,0.038848,0.0874516,0.0015426,0.144067,0.0353101,0.0254773,0.190048,0.131088,0.394069,0.237101,0.0458068,0.0761239,0.0158143,0.0818785,0.182701,0.335058,0.147698,0.141463,0.0148418,0.0103864,0.0889592,0.309588,0.00502301,0.0473033,0.094881,0.445524,0.00924871,0.0774373,0.109194,0.128564,0.131452,0.323837,0.448776,0.051838,0.0993999,0.0500365,0.061829,0.0755121,0.0936516,0.144075,0.0340203,0.0741807,0.00447267,0.389379,0.0232393,0.21727,0.289306,0.119215,0.192475,0.00108376,0.547859,0.057571,0.047591,0.392974,0.0608699,0.175319,0.300597,0.0713214,0.223874,0.291114,0.0355833,0.00824114,0.175094,0.226002,0.936279,0.0229515,0.218192,0.108277,0.0673484,0.108748,0.0494066,0.0958493,0.205732,0.0755808,0.045654,0.110216,0.070276,0.226171,0.153469,0.0376916,0.13262,0.0450031,0.0539144,0.114242,0.00446076,0.172425,0.104948,0.221645,0.057168,0.234298,0.0759837,0.286863,0.152372,0.194941,0.218271,0.101607,0.327067,0.172982,0.340936,0.151597,0.0626744,0.191335,0.148574,0.504592,0.155821,0.0718905,0.0919008,0.0602373,0.144304,0.15063,0.0973823,0.15503,0.170295,0.193653,0.137219,0.228144,0.251466,0.288096,0.11903,0.0838874,0.331451,0.113145,0.112651,0.186638,0.00102368,0.0948451,0.0384217,0.249049,0.140533,0.0997756,0.257598,0.103667,0.113069,0.025556,0.0149597,0.09066,0.0597157,0.166967,0.188651,0.00340589,0.184948,0.156261,0.311847,0.511859,0.0590944,0.247324,0.0169521,0.218229,0.231073,0.407281,0.252227,0.0360851,0.0998546,0.131093,0.0434602,0.133616,0.418146,0.36927,0.449036,0.407369,0.231447,0.18653,0.00296095,0.0789454,0.00255501,0.120472,0.0209277,0.396996,0.00010434,0.406019,0.381071,0.580441,0.0863135,0.0198622,0.00207232,0.390366,0.0305485,0.00559336,0.443185,0.00696618,0.0608227,0.871256,0.0279976,0.518585,0.250246,0.38649,0.284625,0.0344717,0.55194,0.144318,0.28907,0.164197,0.00379441,0.287881,0.21103,0.00445792,0.00846715,0.468444,0.258219,0.446557,0.032364,0.191695,0.390974,0.382874,0.109758,0.161598,0.00310283,0.277094,0.496032,0.0239796,0.37357,0.200632,0.477353,0.452741,0.0508568,0.43491,0.20342,0.200493,0.20558,0.300504,0.25656,0.00254768,0.349197,0.383291,0.156104,0.141318,0.411941,0.0961477,4.6719e-05,0.354789,0.0142192,0.230581,0.120226,0.28424,0.562405,0.314429,0.0175523,0.282286,0.0674279,0.24884,0.01635,0.516511,0.322213,0.656109,0.0655189,0.0156581,0.387276,0.169614,0.802166,0.0433137,0.222037,0.0175112,0.0174635,0.462712,0.148994,0.057399,0.204817,0.122646,0.138871,0.673493,0.166905,0.0210039,0.0833851,0.056391,0.48065,0.0163316,0.332919,0.373557,0.0393909,0.408861,0.365487,0.534741,0.39088,0.0109626,0.236011,0.203486,0.273398,0.375787,0.119167,0.0704514,0.275347,0.0830022,0.0524515,0.241132,0.371414,0.30666,0.303709,0.495883,0.386538,0.508064,0.250964,0.383276,0.457886,0.504711,0.220231,0.509064,0.196976,0.191517,0.463751,0.0145214,0.307334,0.0246928,0.0048173,0.0517073,0.0272975,0.0932845,0.273281,0.368095,0.275089,0.384593,0.138622,0.359231,0.00088965,0.197805,0.608187,0.0136044,0.332774,0.0406989,0.299887,0.634365,0.205413,0.17639,0.0779009,0.276869,0.205298,0.0337138,0.00132507,0.258854,0.188263,0.0719199,0.264884,0.162568,0.00135583,0.0140817,0.00210664,0.0233135,0.0900729,0.0953646,0.166124,0.252184,0.0828367,0.255516,0.20753,0.447185,0.179412,0.0200828,0.220904,0.222977,0.341681,0.000593893,0.21801,0.198614,0.186804,0.123324,0.0213665,0.0325925,0.0933115,0.12405,0.0172483,0.0279371,0.27872,0.0855609,0.131118,0.20837,0.247588,0.222339,0.0673329,0.20847,0.266544,0.113092,0.145701,0.229428,0.0139199,0.228955,0.168748,0.0384949,0.0660995,0.0521984,0.0455518,0.268741,0.201602,0.350452,0.154941,0.120196,0.0986735,0.108462,0.0595618,0.21593,0.158479,0.220319,0.195218,0.124213,0.259632,0.30793,0.180606,0.159884,0.0363723,0.0119784,0.217112,0.123917,0.184317,0.00123184,0.0723291,0.258496,0.261744,0.203781,0.21382,0.207559,0.141867,0.193031,0.0339803,0.115972,0.0273485,0.246105,0.000991755,0.200432,0.139785,0.197112,0.240478,0.00072309,0.13108,0.036274,0.222798,0.172134,0.176789,0.0969345,0.202137,0.310405,0.280943,0.218161,0.0822373,0.202065,0.106739,0.0536053,0.0537737,0.15113,0.00312563,0.0407233,0.0537355,0.319922,0.261724,0.211332,0.187731,0.233626,0.189559,0.00339727,0.0981146,0.064145,0.121913,0.0638699,0.104603,0.0663259,0.0762523,0.128736,0.109171,0.04411,0.066952,0.089609,0.0367455,0.13497,0.204393,0.295769,0.286691,0.347036,0.141729,0.263159,0.255956,0.200105,0.227491,0.29837,0.253509,0.177664,0.00482769,0.0385243,0.131761,0.160658,0.206239,0.0213159,0.00501043,0.236464,0.325148,0.00698179,0.218052,0.223831,0.11528,0.194982,0.190993,0.281727,0.283218,0.249955,0.0143647,0.0272695,0.0935776,3.8704e-06,0.225752,0.207791,0.0958756,0.0859274,0.00694911,0.171683,0.158847,0.271275,0.071111,0.00414049,0.00528373,0.222548,0.0164735,0.157274,0.0251447,0.252796,0.205954,0.0107847
|tfbs_overrepresentation=0.147255,0.0586687,0.716932,0.0477154,0.199763,0.287811,0.0430074,0.414564,0.03272,0.0257057,0.139423,0.225367,0.188771,0.125978,0.148679,0.0619003,0.140982,0.0982016,0.0528514,0.108057,0.188635,0.132577,0.081977,0.0948982,0.0415721,0.0250931,0.209392,0.00424558,0.143747,0.0933697,0.204953,0.114046,0.0180314,0.208242,0.0665252,0.0844722,0.324808,0.0429682,0.00755159,0.0667043,0.0964797,0.0246116,0.140039,0.184019,0.120917,0.0362416,0.0380166,0.0175714,0.111283,0.121201,0.154071,0.00149495,0.0701653,0.0929951,0.00153794,0.0384161,0.107455,0.212709,0.0783235,0.105572,0.0294301,0.149417,0.108602,0.0759481,0.054569,0.0504887,0.0709764,0.0600088,0.0860723,0.167053,0.0126543,0.067678,0.089036,0.119383,0.00747605,0.0171177,0.0964936,0.0436945,0.0372495,0.00725252,0.00472557,0.226912,0.0425,0.114846,0.0472875,0.251834,0.064341,0.209032,0.608896,0.062747,0.0857568,0.0495878,0.0953825,0.0473737,0.0853887,0.00688504,0.0594776,0.153631,0.0927458,0.0415725,0.0574857,0.276221,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.0649715,0.144217,0.269326,0.182599,0.0339971,0.149552,0.0176855,0.101221,0.0337525,0.0203386,0.0566549,0.0101452,0.0838393,0.16671,0.214708,0.140123,0.0857827,0.102368,0.0166632,0.0906875,0.0147934,0.0843604,0.134932,0.0595773,0.0748346,0.0572164,0.0227861,0.125792,0.108101,0.0648644,0.0553359,0.0330399,0.00395526,0.022776,0.0085119,0.203923,0.155998,0.0641358,0.0693171,0.0988228,0.0842275,0.0389418,0.120833,0.200647,0.143677,0.180712,0.0265818,0.0427088,0.117549,0.0747594,0.228385,0.0516985,0.0337251,0.0281563,0.0952829,0.116642,0.147788,0.273479,0.114283,0.0400322,0.127369,0.0403542,0.312091,0.0172085,1.78489e-05,0.12972,0.0541353,0.0799324,0.090079,0.140334,0.181817,0.178449,0.0356339,0.158844,0.122474,0.0274061,0.115574,0.0737247,0.118847,0.183031,0.0401756,0.0828697,0.173562,0.107145,0.187297,0.122935,0.0284396,0.112671,0.0470731,0.0782523,0.0602859,0.0676496,0.109673,0.0893019,0.060398,0.0308319,0.0606036,0.136451,0.259411,0.27358,0.15185,0.206299,0.0169462,0.0458667,0.104357,0.121154,0.1129,0.312578,0.169057,0.164202,0.00527533,0.062995,0.10299,0.14193,0.0119362,0.15606,0.161026,0.0738599,0.126611,0.0101199,0.085973,0.060453,0.059896,0.569726,0.0859236,0.0418404,0.0765029,0.0959204,0.0931946,0.0472272,0.263087,0.163502,0.214803,0.182472,0.348993,0.00500828,0.00355194,0.116283,0.136838,0.0815104,0.00647842,0.0802194,0.117027,0.159052,0.185164,0.185743,0.0980288,0.0980899,0.159674,0.107242,0.201859,0.0695832,0.582402,0.0619218,0.1751,0.163376,0.128096,0.0345133,0.0810678,0.0811639,0.0920653,0.118078,0.0755168,0.278352,0.063292,0.254773,0.446759,0.0865903,0.0380459,0.130174,0.219944,0.355018,0.0691572,0.019623,0.0101922,0.00879988,0.807281,0.00083951,0.0790073,0.261553,0.446302,0.0806291,0.00641099,0.147559,0.330703,0.395854,0.00791734,0.00116194,0.248224,0.00420832,0.00531795,0.0159894,0.0148713,0.0121013,0.000362379,0.187251,0.0756284,0.181715,0.423979,0.00628346,0.330894,0.218329,0.427027,0.376924,0.129235,0.280025,0.173877,0.168255,0.0117562,0.101703,0.142924,0.253571,0.00445889,0.0509673,0.00462582,0.316882,0.0270783,0.0340949,0.236436,0.0447111,0.0557438,0.577664,0.0474194,0.120054,0.0563639,0.416816,0.00535876,0.476744,0.115044,0.373868,0.57762,0.608919,0.017744,0.706298,0.513427,0.161148,0.275351,0.00267743,0.185661,0.346319,0.000147221,0.270984,0.258117,0.155555,0.513852,0.0389686,0.0338468,0.281576,0.472384,0.163244,0.0670502,0.0730934,0.184794,0.230427,0.0158541,0.217247,0.1002,0.00570056,0.0462094,0.00915612,0.448039,0.218623,0.312808,0.117923,0.0451077,0.0747529,0.229003,0.28275,0.589326,0.50215,0.0054714,0.00907354,0.0282052,0.289204,0.0077225,0.319027,0.278044,0.0263998,0.428671,0.228096,0.0642385,0.0209597,0.15631,0.567452,0.421464,0.141711,0.420626,0.516462,0.858756,0.335105,0.144809,0.145539,0.385517,0.376191,0.447325,0.0247309,0.252232,0.152681,0.0465712,0.137098,0.259235,0.134788,0.00502762,0.18767,0.293698,0.284593,0.343734,0.0526965,0.0524121,0.601433,0.00573447,0.00696513,0.0450125,0.262537,0.359455,0.226257,0.0965765,0.41707,0.363685,0.130283,0.166672,0.206222,0.171685,0.0224921,0.437176,0.269226,0.339277,0.0479524,0.281425,0.0105593,0.124432,0.520495,0.159617,0.238587,0.0119179,0.232251,0.189515,0.0891382,0.0595618,0.171389,0.625309,0.347298,0.182325,0.0699395,0.136757,0.0958562,0.6408,0.630264,0.316179,0.0697683,4.28879e-07,0.192544,0.00312417,0.0575676,0.144322,0.223391,0.203656,0.442884,0.441735,0.191777,0.111931,0.28934,0.0435386,0.0515253,0.126478,0.134852,0.10689,0.273326,0.0627924,0.381386,0.0179103,0.0517437,0.0434097,0.0886747,0.0464827,0.169603,0.114583,0.104559,0.0899537,0.0866966,0.0135136,0.107111,0.0438639,0.00389058,0.123593,0.129156,0.210369,0.193675,0.0684384,0.0499762,0.0828956,0.0666953,0.182185,0.111277,0.219383,0.062811,0.0205132,0.00915124,0.188694,0.0481795,0.199971,0.00202975,0.127758,0.0164446,0.184486,0.169234,0.0876426,0.0952322,0.0112557,0.0268081,0.107043,0.275244,0.00481323,0.173708,0.141119,0.0241568,0.0300692,0.131551,0.0445237,0.052362,0.208866,0.153187,0.0797897,0.0974211,0.160149,0.123526,0.0906475,0.0558058,0.0443426,0.517717,0.137332,0.0145999,0.0656973,0.211746,0.220538,0.0801488,0.0757897,0.161801,0.193215,0.00153556,0.0779715,0.0561838,0.0417636,0.0345419,0.0388736,0.254674,0.170307,0.201033,0.0488949,0.016278,0.370421,0.0330727,0.348757,0.02609,0.0394698,0.0596469,0.419264,0.122476,0.108872,0.11002,0.26144,0.0286025,0.549354,0.144567,0.038848,0.0874516,0.0015426,0.144067,0.0353101,0.0254773,0.190048,0.131088,0.394069,0.237101,0.0458068,0.0761239,0.0158143,0.0818785,0.182701,0.335058,0.147698,0.141463,0.0148418,0.0103864,0.0889592,0.309588,0.00502301,0.0473033,0.094881,0.445524,0.00924871,0.0774373,0.109194,0.128564,0.131452,0.323837,0.448776,0.051838,0.0993999,0.0500365,0.061829,0.0755121,0.0936516,0.144075,0.0340203,0.0741807,0.00447267,0.389379,0.0232393,0.21727,0.289306,0.119215,0.192475,0.00108376,0.547859,0.057571,0.047591,0.392974,0.0608699,0.175319,0.300597,0.0713214,0.223874,0.291114,0.0355833,0.00824114,0.175094,0.226002,0.936279,0.0229515,0.218192,0.108277,0.0673484,0.108748,0.0494066,0.0958493,0.205732,0.0755808,0.045654,0.110216,0.070276,0.226171,0.153469,0.0376916,0.13262,0.0450031,0.0539144,0.114242,0.00446076,0.172425,0.104948,0.221645,0.057168,0.234298,0.0759837,0.286863,0.152372,0.194941,0.218271,0.101607,0.327067,0.172982,0.340936,0.151597,0.0626744,0.191335,0.148574,0.504592,0.155821,0.0718905,0.0919008,0.0602373,0.144304,0.15063,0.0973823,0.15503,0.170295,0.193653,0.137219,0.228144,0.251466,0.288096,0.11903,0.0838874,0.331451,0.113145,0.112651,0.186638,0.00102368,0.0948451,0.0384217,0.249049,0.140533,0.0997756,0.257598,0.103667,0.113069,0.025556,0.0149597,0.09066,0.0597157,0.166967,0.188651,0.00340589,0.184948,0.156261,0.311847,0.511859,0.0590944,0.247324,0.0169521,0.218229,0.231073,0.407281,0.252227,0.0360851,0.0998546,0.131093,0.0434602,0.133616,0.418146,0.36927,0.449036,0.407369,0.231447,0.18653,0.00296095,0.0789454,0.00255501,0.120472,0.0209277,0.396996,0.00010434,0.406019,0.381071,0.580441,0.0863135,0.0198622,0.00207232,0.390366,0.0305485,0.00559336,0.443185,0.00696618,0.0608227,0.871256,0.0279976,0.518585,0.250246,0.38649,0.284625,0.0344717,0.55194,0.144318,0.28907,0.164197,0.00379441,0.287881,0.21103,0.00445792,0.00846715,0.468444,0.258219,0.446557,0.032364,0.191695,0.390974,0.382874,0.109758,0.161598,0.00310283,0.277094,0.496032,0.0239796,0.37357,0.200632,0.477353,0.452741,0.0508568,0.43491,0.20342,0.200493,0.20558,0.300504,0.25656,0.00254768,0.349197,0.383291,0.156104,0.141318,0.411941,0.0961477,4.6719e-05,0.354789,0.0142192,0.230581,0.120226,0.28424,0.562405,0.314429,0.0175523,0.282286,0.0674279,0.24884,0.01635,0.516511,0.322213,0.656109,0.0655189,0.0156581,0.387276,0.169614,0.802166,0.0433137,0.222037,0.0175112,0.0174635,0.462712,0.148994,0.057399,0.204817,0.122646,0.138871,0.673493,0.166905,0.0210039,0.0833851,0.056391,0.48065,0.0163316,0.332919,0.373557,0.0393909,0.408861,0.365487,0.534741,0.39088,0.0109626,0.236011,0.203486,0.273398,0.375787,0.119167,0.0704514,0.275347,0.0830022,0.0524515,0.241132,0.371414,0.30666,0.303709,0.495883,0.386538,0.508064,0.250964,0.383276,0.457886,0.504711,0.220231,0.509064,0.196976,0.191517,0.463751,0.0145214,0.307334,0.0246928,0.0048173,0.0517073,0.0272975,0.0932845,0.273281,0.368095,0.275089,0.384593,0.138622,0.359231,0.00088965,0.197805,0.608187,0.0136044,0.332774,0.0406989,0.299887,0.634365,0.205413,0.17639,0.0779009,0.276869,0.205298,0.0337138,0.00132507,0.258854,0.188263,0.0719199,0.264884,0.162568,0.00135583,0.0140817,0.00210664,0.0233135,0.0900729,0.0953646,0.166124,0.252184,0.0828367,0.255516,0.20753,0.447185,0.179412,0.0200828,0.220904,0.222977,0.341681,0.000593893,0.21801,0.198614,0.186804,0.123324,0.0213665,0.0325925,0.0933115,0.12405,0.0172483,0.0279371,0.27872,0.0855609,0.131118,0.20837,0.247588,0.222339,0.0673329,0.20847,0.266544,0.113092,0.145701,0.229428,0.0139199,0.228955,0.168748,0.0384949,0.0660995,0.0521984,0.0455518,0.268741,0.201602,0.350452,0.154941,0.120196,0.0986735,0.108462,0.0595618,0.21593,0.158479,0.220319,0.195218,0.124213,0.259632,0.30793,0.180606,0.159884,0.0363723,0.0119784,0.217112,0.123917,0.184317,0.00123184,0.0723291,0.258496,0.261744,0.203781,0.21382,0.207559,0.141867,0.193031,0.0339803,0.115972,0.0273485,0.246105,0.000991755,0.200432,0.139785,0.197112,0.240478,0.00072309,0.13108,0.036274,0.222798,0.172134,0.176789,0.0969345,0.202137,0.310405,0.280943,0.218161,0.0822373,0.202065,0.106739,0.0536053,0.0537737,0.15113,0.00312563,0.0407233,0.0537355,0.319922,0.261724,0.211332,0.187731,0.233626,0.189559,0.00339727,0.0981146,0.064145,0.121913,0.0638699,0.104603,0.0663259,0.0762523,0.128736,0.109171,0.04411,0.066952,0.089609,0.0367455,0.13497,0.204393,0.295769,0.286691,0.347036,0.141729,0.263159,0.255956,0.200105,0.227491,0.29837,0.253509,0.177664,0.00482769,0.0385243,0.131761,0.160658,0.206239,0.0213159,0.00501043,0.236464,0.325148,0.00698179,0.218052,0.223831,0.11528,0.194982,0.190993,0.281727,0.283218,0.249955,0.0143647,0.0272695,0.0935776,3.8704e-06,0.225752,0.207791,0.0958756,0.0859274,0.00694911,0.171683,0.158847,0.271275,0.071111,0.00414049,0.00528373,0.222548,0.0164735,0.157274,0.0251447,0.252796,0.205954,0.0107847
|tfbs_overrepresentation_for_novel_motifs=0.699513,0.14394,0.690871,0.855819,0.641468,0.853988,0.937929,0.494933,0.491742,0.63186,0.820209,0.985163,0.436625,0.925331,0.639839,0.667627,1.17594,0.575162,0.452865,0.305559,0.69094,0.242883,0.845342,0.635379,0.743951,1.00973,0.409304,0.842925,3.83144,0.388328,0.795576,1.21459,0.534793,0.439574,0.599922,0.427404,0.596053,0.855276,0.567465,0.469078,0.598234,0.777097,0.259059,0.63803,0.151453,0.726632,0.939121,0.808003,0.69206,0.645308,1.02504,0.951993,0.336258,1.29475,1.45259,0.928548,0.650353,0.892517,0.388177,0.891404,1.25741,0.941709,0.492369,1.14672,0.961293,1.11026,1.54311,1.91674,1.2037,1.75271,1.7986,0.502203,0.886337,1.45054,0.430728,0.414196,0.396746,1.12884,1.20029,0.73687,1.16162,1.14559,0.960908,0.498519,1.39759,0.169933,0.82001,0.993996,1.053,2.0169,1.63834,1.36973,1.23218,0.543775,0.642354,1.37703,0.450952,1.27663,1.05794,0.946807,0.569121,1.22626,1.27082,1.1798,1.09802,0.815119,1.16312,0.921547,1.7605,0.622396,0.703975,1.26794,1.63757,0.830777,1.58942,0.594137,0.188952,1.86486,1.10778,0.547323,1.44203,1.0504,0.850918,0.973172,1.70203,1.12965,0.930979,1.2374,1.48578,0.561252,1.37044,0.798812,1.50051,0.969553,1.65144,2.60433,0.788803,0.843556,1.60823,2.47382,2.06967,1.57016,0.932872,1.27296,1.09989,0.883164,1.08214,2.31409,0.773313,0.539692,0.318511,0.698641,1.37083,1.21015,0.941179,1.78371,1.03563,0.624795,0.744018,0.710709,1.56892,1.35169,1.19946,0.714443,1.11698,0.960047,0.524529,0.936473,0.0768232
}}
}}

Revision as of 16:19, 26 November 2012


Full id: C3731_temporal_Neural_parietal_Melanocyte_duodenum_occipital_Neurons



Phase1 CAGE Peaks

Hg19::chr18:55713191..55713198,+p@chr18:55713191..55713198
+
Hg19::chr6:138893661..138893687,-p7@NHSL1
Hg19::chr6:138893690..138893714,-p9@NHSL1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
neurectodermal cell2.61e-1459
pigment cell6.03e-1414
neural cell5.25e-1225
neuronal stem cell5.47e-108
melanocyte6.61e-1010
melanoblast6.61e-1010
ectodermal cell7.27e-1072
migratory neural crest cell4.21e-0941
oligodendrocyte5.38e-087
macroglial cell5.38e-087
astrocyte5.38e-087
oligodendrocyte precursor cell5.38e-087
neuron1.29e-076
neuroblast1.29e-076
electrically signaling cell1.29e-076
columnar/cuboidal epithelial cell2.08e-0727
neurecto-epithelial cell4.16e-0720
Uber Anatomy
Ontology termp-valuen
neurectoderm6.45e-2786
neural plate8.13e-2782
presumptive neural plate8.13e-2782
central nervous system3.88e-2681
nervous system3.19e-2489
ecto-epithelium2.12e-22104
ectoderm-derived structure1.30e-21171
ectoderm1.30e-21171
presumptive ectoderm1.30e-21171
organ system subdivision6.86e-21223
neural tube2.45e-1956
neural rod2.45e-1956
future spinal cord2.45e-1956
neural keel2.45e-1956
regional part of nervous system1.49e-1853
regional part of brain1.49e-1853
brain2.51e-1868
future brain2.51e-1868
pre-chordal neural plate4.48e-1861
anatomical cluster2.07e-17373
structure with developmental contribution from neural crest4.06e-15132
cell layer7.21e-13309
epithelium7.59e-13306
regional part of forebrain1.80e-1241
forebrain1.80e-1241
anterior neural tube1.80e-1241
future forebrain1.80e-1241
adult organism1.57e-11114
telencephalon2.47e-1134
cerebral hemisphere2.89e-1132
pigment epithelium of eye2.07e-1011
regional part of telencephalon2.47e-1032
brain grey matter2.69e-1034
gray matter2.69e-1034
cerebral cortex7.14e-1025
pallium7.14e-1025
multi-tissue structure2.07e-09342
posterior neural tube1.87e-0815
chordal neural plate1.87e-0815
tube4.82e-08192
multi-cellular organism6.87e-08656
segmental subdivision of hindbrain7.60e-0812
hindbrain7.60e-0812
presumptive hindbrain7.60e-0812
regional part of cerebral cortex2.01e-0722
eye2.13e-0721
visual system2.13e-0721
neocortex2.42e-0720
segmental subdivision of nervous system4.83e-0713
face5.93e-0722
camera-type eye7.89e-0720
simple eye7.89e-0720
immature eye7.89e-0720
ocular region7.89e-0720
eyeball of camera-type eye7.89e-0720
optic cup7.89e-0720
optic vesicle7.89e-0720
eye primordium7.89e-0720


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
E2F1#186934.907389214879320.008460985347239390.0325160747968919
FOXA2#3170216.42030916844350.004810682352105480.0225868932823028
TRIM28#10155212.39368336350830.008368344129438470.0329071686635199



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

This analysis result is provided for C0 - C305 clusters.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=Coexpression_cluster:C3731&oldid=2560068"