FFCP PHASE1:Hg19::chr19:11217362..11217367,+: Difference between revisions
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|ontology_enrichment_celltype=CL:0000012!4.65e-22!682;CL:0000003!5.69e-22!722;CL:0000548!7.51e-22!679;CL:0000004!7.51e-22!679;CL:0000255!7.51e-22!679;CL:0002371!1.23e-20!591;CL:0000144!7.41e-19!625;CL:0000220!1.52e-11!246;CL:0002321!4.42e-11!248;CL:0000055!4.13e-09!180;CL:0000066!3.30e-08!254;CL:0000183!4.84e-08!59;CL:0000187!5.36e-07!54;CL:0000393!6.92e-07!60;CL:0000211!6.92e-07!60;CL:0000680!7.16e-07!57;CL:0000056!7.16e-07!57;CL:0000355!7.16e-07!57;CL:0000063!8.19e-07!578 | |ontology_enrichment_celltype=CL:0000012!4.65e-22!682;CL:0000003!5.69e-22!722;CL:0000548!7.51e-22!679;CL:0000004!7.51e-22!679;CL:0000255!7.51e-22!679;CL:0002371!1.23e-20!591;CL:0000144!7.41e-19!625;CL:0000220!1.52e-11!246;CL:0002321!4.42e-11!248;CL:0000055!4.13e-09!180;CL:0000066!3.30e-08!254;CL:0000183!4.84e-08!59;CL:0000187!5.36e-07!54;CL:0000393!6.92e-07!60;CL:0000211!6.92e-07!60;CL:0000680!7.16e-07!57;CL:0000056!7.16e-07!57;CL:0000355!7.16e-07!57;CL:0000063!8.19e-07!578 | ||
|ontology_enrichment_celltype_v019=CL:1000507;1.06e-10;10!CL:1000494;1.06e-10;10!CL:1000449;4.84e-09;15!CL:1000497;1.34e-07;17!CL:0002518;1.34e-07;17!CL:0002202;7.17e-07;9!CL:0002632;7.17e-07;9!CL:0002681;1.00e-06;12!CL:0002584;1.00e-06;12 | |ontology_enrichment_celltype_v019=CL:1000507;1.06e-10;10!CL:1000494;1.06e-10;10!CL:1000449;4.84e-09;15!CL:1000497;1.34e-07;17!CL:0002518;1.34e-07;17!CL:0002202;7.17e-07;9!CL:0002632;7.17e-07;9!CL:0002681;1.00e-06;12!CL:0002584;1.00e-06;12 | ||
|ontology_enrichment_celltype_v019_2=CL:1000507,1.12e-10,10;CL:1000494,1.12e-10,10;CL:1000449,5.92e-09,15;CL:0002321,2.85e-08,250;CL:1000497,1.59e-07,17;CL:0002518,1.59e-07,17;CL:0002202,6.02e-07,9;CL:0002632,6.02e-07,9 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!5.10e-08!143;UBERON:0000914!3.42e-07!83;UBERON:0002329!3.42e-07!83;UBERON:0003077!3.42e-07!83;UBERON:0003059!3.42e-07!83;UBERON:0007282!3.42e-07!83;UBERON:0009618!3.42e-07!83;UBERON:0007285!3.42e-07!83;UBERON:0000490!3.47e-07!138 | |ontology_enrichment_uberon=UBERON:0005256!5.10e-08!143;UBERON:0000914!3.42e-07!83;UBERON:0002329!3.42e-07!83;UBERON:0003077!3.42e-07!83;UBERON:0003059!3.42e-07!83;UBERON:0007282!3.42e-07!83;UBERON:0009618!3.42e-07!83;UBERON:0007285!3.42e-07!83;UBERON:0000490!3.47e-07!138 | ||
|ontology_enrichment_uberon_v019=UBERON:0004211;1.06e-10;10!UBERON:0009773;1.06e-10;10!UBERON:0001231;1.06e-10;10!UBERON:0004810;1.06e-10;10!UBERON:0006555;4.84e-09;15!UBERON:0004819;4.84e-09;15!UBERON:0001285;4.84e-09;15!UBERON:0007684;4.84e-09;15!UBERON:0001801;2.94e-08;14!UBERON:0000019;4.81e-08;19!UBERON:0000047;4.81e-08;19!UBERON:0004088;4.81e-08;19!UBERON:0010230;4.81e-08;19!UBERON:0000970;1.83e-07;20!UBERON:0007196;2.64e-07;15!UBERON:0001558;2.64e-07;15!UBERON:0002104;6.05e-07;21!UBERON:0001456;6.05e-07;21!UBERON:0001225;1.00e-06;12!UBERON:0008987;1.00e-06;12 | |ontology_enrichment_uberon_v019=UBERON:0004211;1.06e-10;10!UBERON:0009773;1.06e-10;10!UBERON:0001231;1.06e-10;10!UBERON:0004810;1.06e-10;10!UBERON:0006555;4.84e-09;15!UBERON:0004819;4.84e-09;15!UBERON:0001285;4.84e-09;15!UBERON:0007684;4.84e-09;15!UBERON:0001801;2.94e-08;14!UBERON:0000019;4.81e-08;19!UBERON:0000047;4.81e-08;19!UBERON:0004088;4.81e-08;19!UBERON:0010230;4.81e-08;19!UBERON:0000970;1.83e-07;20!UBERON:0007196;2.64e-07;15!UBERON:0001558;2.64e-07;15!UBERON:0002104;6.05e-07;21!UBERON:0001456;6.05e-07;21!UBERON:0001225;1.00e-06;12!UBERON:0008987;1.00e-06;12 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,1.12e-10,10;UBERON:0005085,3.83e-09,31;UBERON:0000119,4.97e-09,309;UBERON:0004211,5.92e-09,15;UBERON:0009773,5.92e-09,15;UBERON:0001231,5.92e-09,15;UBERON:0001285,5.92e-09,15;UBERON:0007684,5.92e-09,15;UBERON:0004208,5.92e-09,15;UBERON:0001801,1.20e-08,14;UBERON:0000483,2.14e-08,306;UBERON:0006555,3.42e-08,16;UBERON:0004819,3.42e-08,16;UBERON:0000019,8.96e-08,20;UBERON:0000047,8.96e-08,20;UBERON:0010312,8.96e-08,20;UBERON:0004088,8.96e-08,20;UBERON:0010230,8.96e-08,20;UBERON:0003072,8.96e-08,20;UBERON:0004128,8.96e-08,20;UBERON:0003071,8.96e-08,20;UBERON:0007196,2.34e-07,15;UBERON:0001558,2.34e-07,15;UBERON:0000970,3.11e-07,21;UBERON:0002104,3.11e-07,21;UBERON:0000490,3.45e-07,148;UBERON:0001456,9.55e-07,22 | |||
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| ||
|short_description=p6@LDLR | |short_description=p6@LDLR | ||
}} | }} |
Revision as of 09:40, 18 November 2012
Short description: | p6@LDLR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_LDLR_5end |
Coexpression cluster: | C193_Mesenchymal_Adipocyte_mature_Cardiac_heart_CD14CD16_CD14 |
Association with transcript: | 330bp_to_ENST00000558528_5end |
EntrezGene: | LDLR |
HGNC: | 6547 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 1.12e-10 | 10 |
nephron tubule epithelial cell | 1.12e-10 | 10 |
epithelial cell of nephron | 5.92e-09 | 15 |
embryonic cell | 2.85e-08 | 250 |
kidney cell | 1.59e-07 | 17 |
kidney epithelial cell | 1.59e-07 | 17 |
epithelial cell of tracheobronchial tree | 6.02e-07 | 9 |
epithelial cell of lower respiratory tract | 6.02e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 1.12e-10 | 10 |
ectodermal placode | 3.83e-09 | 31 |
cell layer | 4.97e-09 | 309 |
nephron epithelium | 5.92e-09 | 15 |
renal tubule | 5.92e-09 | 15 |
nephron tubule | 5.92e-09 | 15 |
nephron | 5.92e-09 | 15 |
uriniferous tubule | 5.92e-09 | 15 |
nephrogenic mesenchyme | 5.92e-09 | 15 |
anterior segment of eyeball | 1.20e-08 | 14 |
epithelium | 2.14e-08 | 306 |
excretory tube | 3.42e-08 | 16 |
kidney epithelium | 3.42e-08 | 16 |
camera-type eye | 8.96e-08 | 20 |
simple eye | 8.96e-08 | 20 |
immature eye | 8.96e-08 | 20 |
ocular region | 8.96e-08 | 20 |
eyeball of camera-type eye | 8.96e-08 | 20 |
optic cup | 8.96e-08 | 20 |
optic vesicle | 8.96e-08 | 20 |
eye primordium | 8.96e-08 | 20 |
tracheobronchial tree | 2.34e-07 | 15 |
lower respiratory tract | 2.34e-07 | 15 |
eye | 3.11e-07 | 21 |
visual system | 3.11e-07 | 21 |
unilaminar epithelium | 3.45e-07 | 148 |
face | 9.55e-07 | 22 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.