FFCP PHASE1:Hg19::chr15:55562582..55562617,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 9: | Line 9: | ||
|ontology_enrichment_celltype=CL:0000147!5.33e-33!14;CL:0000148!2.51e-26!10;CL:0000541!2.51e-26!10;CL:0000149!1.61e-14!4;CL:0000710!3.11e-12!20;CL:0002567!2.66e-11!3;CL:0002586!3.15e-11!3;CL:0000325!5.28e-10!39;CL:0000075!1.35e-08!27 | |ontology_enrichment_celltype=CL:0000147!5.33e-33!14;CL:0000148!2.51e-26!10;CL:0000541!2.51e-26!10;CL:0000149!1.61e-14!4;CL:0000710!3.11e-12!20;CL:0002567!2.66e-11!3;CL:0002586!3.15e-11!3;CL:0000325!5.28e-10!39;CL:0000075!1.35e-08!27 | ||
|ontology_enrichment_celltype_v019=CL:0000147;6.07e-87;14!CL:0000148;3.17e-74;10!CL:0002567;9.75e-46;3!CL:0000710;4.94e-37;20!CL:0000149;8.99e-35;4!CL:0000075;2.30e-27;27!CL:0002586;4.69e-21;3!CL:0002077;3.56e-19;34!CL:0002566;5.53e-17;1 | |ontology_enrichment_celltype_v019=CL:0000147;6.07e-87;14!CL:0000148;3.17e-74;10!CL:0002567;9.75e-46;3!CL:0000710;4.94e-37;20!CL:0000149;8.99e-35;4!CL:0000075;2.30e-27;27!CL:0002586;4.69e-21;3!CL:0002077;3.56e-19;34!CL:0002566;5.53e-17;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0000147,6.07e-87,14;CL:0000148,3.35e-74,10;CL:0000541,3.35e-74,10;CL:0002567,1.05e-45,3;CL:0000710,5.08e-37,20;CL:0000149,8.49e-35,4;CL:0000075,2.35e-27,27;CL:0002077,1.17e-21,34;CL:0002586,4.46e-21,3;CL:0000333,4.73e-17,41;CL:0002566,5.53e-17,1;CL:0000133,6.77e-12,59;CL:0000221,1.01e-09,72 | |||
|ontology_enrichment_development_v019=CL:0000133;9.19e-07;59 | |ontology_enrichment_development_v019=CL:0000133;9.19e-07;59 | ||
|ontology_enrichment_disease=DOID:1909!3.36e-08!2 | |ontology_enrichment_disease=DOID:1909!3.36e-08!2 | ||
|ontology_enrichment_disease_v019=DOID:1909;1.37e-31;2 | |ontology_enrichment_disease_v019=DOID:1909;1.37e-31;2 | ||
|ontology_enrichment_disease_v019_2=DOID:1909,1.37e-31,2 | |||
|ontology_enrichment_uberon=UBERON:0001049!9.44e-30!57;UBERON:0005068!9.44e-30!57;UBERON:0006241!9.44e-30!57;UBERON:0007135!9.44e-30!57;UBERON:0005743!8.92e-27!86;UBERON:0000073!2.33e-25!94;UBERON:0001016!2.33e-25!94;UBERON:0003075!3.98e-25!86;UBERON:0007284!3.98e-25!86;UBERON:0002346!1.12e-23!90;UBERON:0002616!1.26e-23!59;UBERON:0002780!1.09e-21!41;UBERON:0001890!1.09e-21!41;UBERON:0006240!1.09e-21!41;UBERON:0007023!3.22e-21!115;UBERON:0002020!3.29e-21!34;UBERON:0003528!3.29e-21!34;UBERON:0003080!4.53e-21!42;UBERON:0001893!4.68e-21!34;UBERON:0000955!5.95e-21!69;UBERON:0006238!5.95e-21!69;UBERON:0003056!6.05e-21!61;UBERON:0001017!3.23e-20!82;UBERON:0002791!3.45e-19!33;UBERON:0001869!2.97e-17!32;UBERON:0000033!4.75e-15!123;UBERON:0000153!5.10e-14!129;UBERON:0007811!5.10e-14!129;UBERON:0002298!6.34e-14!8;UBERON:0002619!1.10e-13!22;UBERON:0004121!6.96e-13!169;UBERON:0000924!2.11e-12!173;UBERON:0006601!2.11e-12!173;UBERON:0002308!3.27e-12!9;UBERON:0000125!3.27e-12!9;UBERON:0000956!7.61e-12!25;UBERON:0000203!7.61e-12!25;UBERON:0000966!1.38e-11!5;UBERON:0005388!1.38e-11!5;UBERON:0001802!1.38e-11!5;UBERON:0001781!3.15e-11!3;UBERON:0001782!3.15e-11!3;UBERON:0005424!3.15e-11!3;UBERON:0000988!1.99e-10!3;UBERON:0006331!3.76e-10!3;UBERON:0001950!6.80e-10!20;UBERON:0003076!7.96e-10!15;UBERON:0003057!7.96e-10!15;UBERON:0000200!4.88e-08!6;UBERON:0001954!1.28e-07!2;UBERON:0003022!1.28e-07!2;UBERON:0002421!1.28e-07!2;UBERON:0002600!1.28e-07!2;UBERON:0002148!1.78e-07!2;UBERON:0009662!1.78e-07!2;UBERON:0009663!2.24e-07!7 | |ontology_enrichment_uberon=UBERON:0001049!9.44e-30!57;UBERON:0005068!9.44e-30!57;UBERON:0006241!9.44e-30!57;UBERON:0007135!9.44e-30!57;UBERON:0005743!8.92e-27!86;UBERON:0000073!2.33e-25!94;UBERON:0001016!2.33e-25!94;UBERON:0003075!3.98e-25!86;UBERON:0007284!3.98e-25!86;UBERON:0002346!1.12e-23!90;UBERON:0002616!1.26e-23!59;UBERON:0002780!1.09e-21!41;UBERON:0001890!1.09e-21!41;UBERON:0006240!1.09e-21!41;UBERON:0007023!3.22e-21!115;UBERON:0002020!3.29e-21!34;UBERON:0003528!3.29e-21!34;UBERON:0003080!4.53e-21!42;UBERON:0001893!4.68e-21!34;UBERON:0000955!5.95e-21!69;UBERON:0006238!5.95e-21!69;UBERON:0003056!6.05e-21!61;UBERON:0001017!3.23e-20!82;UBERON:0002791!3.45e-19!33;UBERON:0001869!2.97e-17!32;UBERON:0000033!4.75e-15!123;UBERON:0000153!5.10e-14!129;UBERON:0007811!5.10e-14!129;UBERON:0002298!6.34e-14!8;UBERON:0002619!1.10e-13!22;UBERON:0004121!6.96e-13!169;UBERON:0000924!2.11e-12!173;UBERON:0006601!2.11e-12!173;UBERON:0002308!3.27e-12!9;UBERON:0000125!3.27e-12!9;UBERON:0000956!7.61e-12!25;UBERON:0000203!7.61e-12!25;UBERON:0000966!1.38e-11!5;UBERON:0005388!1.38e-11!5;UBERON:0001802!1.38e-11!5;UBERON:0001781!3.15e-11!3;UBERON:0001782!3.15e-11!3;UBERON:0005424!3.15e-11!3;UBERON:0000988!1.99e-10!3;UBERON:0006331!3.76e-10!3;UBERON:0001950!6.80e-10!20;UBERON:0003076!7.96e-10!15;UBERON:0003057!7.96e-10!15;UBERON:0000200!4.88e-08!6;UBERON:0001954!1.28e-07!2;UBERON:0003022!1.28e-07!2;UBERON:0002421!1.28e-07!2;UBERON:0002600!1.28e-07!2;UBERON:0002148!1.78e-07!2;UBERON:0009662!1.78e-07!2;UBERON:0009663!2.24e-07!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0000966;6.68e-28;5!UBERON:0005388;6.68e-28;5!UBERON:0001802;6.68e-28;5!UBERON:0001781;4.69e-21;3!UBERON:0001782;4.69e-21;3!UBERON:0000970;1.98e-12;20!UBERON:0002104;7.46e-12;21!UBERON:0000020;7.54e-11;23!UBERON:0001032;2.08e-10;24!UBERON:0004456;2.08e-10;24!UBERON:0000019;8.29e-08;19!UBERON:0000047;8.29e-08;19!UBERON:0004088;8.29e-08;19!UBERON:0010230;8.29e-08;19!UBERON:0010371;9.10e-08;31!UBERON:0001456;4.10e-07;21 | |ontology_enrichment_uberon_v019=UBERON:0000966;6.68e-28;5!UBERON:0005388;6.68e-28;5!UBERON:0001802;6.68e-28;5!UBERON:0001781;4.69e-21;3!UBERON:0001782;4.69e-21;3!UBERON:0000970;1.98e-12;20!UBERON:0002104;7.46e-12;21!UBERON:0000020;7.54e-11;23!UBERON:0001032;2.08e-10;24!UBERON:0004456;2.08e-10;24!UBERON:0000019;8.29e-08;19!UBERON:0000047;8.29e-08;19!UBERON:0004088;8.29e-08;19!UBERON:0010230;8.29e-08;19!UBERON:0010371;9.10e-08;31!UBERON:0001456;4.10e-07;21 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,2.13e-23,6;UBERON:0005388,2.13e-23,6;UBERON:0001802,2.13e-23,6;UBERON:0001782,4.46e-21,3;UBERON:0005424,4.46e-21,3;UBERON:0001781,4.51e-16,4;UBERON:0000970,7.36e-12,21;UBERON:0002104,7.36e-12,21;UBERON:0000020,2.05e-10,24;UBERON:0001032,2.05e-10,24;UBERON:0004456,2.05e-10,24;UBERON:0000019,1.90e-07,20;UBERON:0000047,1.90e-07,20;UBERON:0010312,1.90e-07,20;UBERON:0004088,1.90e-07,20;UBERON:0010230,1.90e-07,20;UBERON:0003072,1.90e-07,20;UBERON:0004128,1.90e-07,20;UBERON:0003071,1.90e-07,20;UBERON:0001456,8.10e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0.651083453856419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213557388818567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,40.8291460298647,15.6615254478894,7.03304683260282,1.71072446022705,13.2647465587287,27.3312182637965,44.8747499230008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.89835287767695,0.984043937099117,7.15832468261467,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238231775457789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201799707191048,0,0,0.307240764308458,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.463840490809256,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.269604531922708,0,0.468528891450678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.74559555639118,0,0,0.126621591911757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0.272406812223151,0,0,0,0,0,0.182248669974074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0.39669780522807,0,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0.221858103073705,0.372578417648301,0,0,8.94729793495722,20.5535040152377,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0.138258436151731,0.974301544196942,0,0.654261577023377,0,0,0,0.19998739585493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256916900385838,0,0,0,0,0.138314504928436,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0,0.413373593002368,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0.339848664884159,0.0657727735628491,0,0,0,0,0,0,0,0,16.7255113373376,0,0,0,0,0,0,0,0,0.236664001461131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.785233868459781,0.891139200981258,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310298987585686,0,0,0,0,0,0.0636471582781649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0.651083453856419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213557388818567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,40.8291460298647,15.6615254478894,7.03304683260282,1.71072446022705,13.2647465587287,27.3312182637965,44.8747499230008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.89835287767695,0.984043937099117,7.15832468261467,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238231775457789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201799707191048,0,0,0.307240764308458,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.463840490809256,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.269604531922708,0,0.468528891450678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.74559555639118,0,0,0.126621591911757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0.272406812223151,0,0,0,0,0,0.182248669974074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0.39669780522807,0,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0.221858103073705,0.372578417648301,0,0,8.94729793495722,20.5535040152377,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0.138258436151731,0.974301544196942,0,0.654261577023377,0,0,0,0.19998739585493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256916900385838,0,0,0,0,0.138314504928436,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0,0.413373593002368,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0.339848664884159,0.0657727735628491,0,0,0,0,0,0,0,0,16.7255113373376,0,0,0,0,0,0,0,0,0.236664001461131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.785233868459781,0.891139200981258,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310298987585686,0,0,0,0,0,0.0636471582781649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p3@RAB27A | |short_description=p3@RAB27A | ||
}} | }} |
Revision as of 21:32, 17 November 2012
Short description: | p3@RAB27A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_RAB27A_5end |
Coexpression cluster: | C58_Melanocyte_melanoma_retina_Retinal_eye_migratory_H9 |
Association with transcript: | 0bp_to_ENST00000396304, ENST00000396307, NM_004580, uc002acp.2_5end |
EntrezGene: | RAB27A |
HGNC: | 9766 |
UniProt: | P51159A2RU94 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pigment cell | 6.07e-87 | 14 |
melanocyte | 3.35e-74 | 10 |
melanoblast | 3.35e-74 | 10 |
light melanocyte | 1.05e-45 | 3 |
neurecto-epithelial cell | 5.08e-37 | 20 |
visual pigment cell | 8.49e-35 | 4 |
columnar/cuboidal epithelial cell | 2.35e-27 | 27 |
ecto-epithelial cell | 1.17e-21 | 34 |
retinal pigment epithelial cell | 4.46e-21 | 3 |
migratory neural crest cell | 4.73e-17 | 41 |
dark melanocyte | 5.53e-17 | 1 |
neurectodermal cell | 6.77e-12 | 59 |
ectodermal cell | 1.01e-09 | 72 |
Ontology term | p-value | n |
---|---|---|
retina | 2.13e-23 | 6 |
photoreceptor array | 2.13e-23 | 6 |
posterior segment of eyeball | 2.13e-23 | 6 |
pigmented layer of retina | 4.46e-21 | 3 |
presumptive retinal pigmented epithelium | 4.46e-21 | 3 |
layer of retina | 4.51e-16 | 4 |
eye | 7.36e-12 | 21 |
visual system | 7.36e-12 | 21 |
sense organ | 2.05e-10 | 24 |
sensory system | 2.05e-10 | 24 |
entire sense organ system | 2.05e-10 | 24 |
camera-type eye | 1.90e-07 | 20 |
simple eye | 1.90e-07 | 20 |
immature eye | 1.90e-07 | 20 |
ocular region | 1.90e-07 | 20 |
eyeball of camera-type eye | 1.90e-07 | 20 |
optic cup | 1.90e-07 | 20 |
optic vesicle | 1.90e-07 | 20 |
eye primordium | 1.90e-07 | 20 |
face | 8.10e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
melanoma | 1.37e-31 | 2 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.