FFCP PHASE1:Hg19::chr17:48262790..48262905,-: Difference between revisions
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|ontology_enrichment_celltype=CL:0000055!6.91e-39!180;CL:0000057!2.07e-23!75;CL:0000183!4.98e-15!59;CL:0000680!7.19e-15!57;CL:0000056!7.19e-15!57;CL:0000355!7.19e-15!57;CL:0000187!2.24e-14!54;CL:0000393!5.63e-14!60;CL:0000211!5.63e-14!60;CL:0000192!3.99e-11!42;CL:0000514!3.99e-11!42;CL:0002620!3.02e-09!23;CL:0000359!7.50e-08!32;CL:0002334!9.20e-08!12;CL:0000499!2.74e-07!27;CL:0000222!3.55e-07!119 | |ontology_enrichment_celltype=CL:0000055!6.91e-39!180;CL:0000057!2.07e-23!75;CL:0000183!4.98e-15!59;CL:0000680!7.19e-15!57;CL:0000056!7.19e-15!57;CL:0000355!7.19e-15!57;CL:0000187!2.24e-14!54;CL:0000393!5.63e-14!60;CL:0000211!5.63e-14!60;CL:0000192!3.99e-11!42;CL:0000514!3.99e-11!42;CL:0002620!3.02e-09!23;CL:0000359!7.50e-08!32;CL:0002334!9.20e-08!12;CL:0000499!2.74e-07!27;CL:0000222!3.55e-07!119 | ||
|ontology_enrichment_celltype_v019=CL:0000134;1.64e-10;55!CL:0000057;3.28e-10;73!CL:0002620;4.20e-10;23!CL:0000048;7.91e-10;58!CL:0000723;8.81e-10;61!CL:0000187;2.15e-09;55!CL:0002320;2.41e-09;188!CL:0000192;4.41e-09;43!CL:0002334;2.03e-08;12!CL:0000393;2.86e-08;61!CL:0000211;2.86e-08;61!CL:0000359;3.72e-08;32!CL:0000499;4.44e-08;28!CL:0000034;7.75e-08;69 | |ontology_enrichment_celltype_v019=CL:0000134;1.64e-10;55!CL:0000057;3.28e-10;73!CL:0002620;4.20e-10;23!CL:0000048;7.91e-10;58!CL:0000723;8.81e-10;61!CL:0000187;2.15e-09;55!CL:0002320;2.41e-09;188!CL:0000192;4.41e-09;43!CL:0002334;2.03e-08;12!CL:0000393;2.86e-08;61!CL:0000211;2.86e-08;61!CL:0000359;3.72e-08;32!CL:0000499;4.44e-08;28!CL:0000034;7.75e-08;69 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.83e-26,76;CL:0000680,1.22e-16,58;CL:0000056,1.22e-16,58;CL:0000355,1.22e-16,58;CL:0000187,4.28e-16,55;CL:0000393,2.92e-15,61;CL:0000211,2.92e-15,61;CL:0000192,1.72e-12,43;CL:0000514,1.72e-12,43;CL:0000048,2.68e-11,427;CL:0000723,1.65e-10,433;CL:0000034,4.06e-10,441;CL:0002620,4.62e-10,23;CL:0000359,1.61e-08,32;CL:0002334,2.02e-08,12;CL:0000222,4.17e-08,121;CL:0000499,4.73e-08,28 | |||
|ontology_enrichment_development_v019=CL:0000355;3.87e-09;58!CL:0000514;4.41e-09;43 | |ontology_enrichment_development_v019=CL:0000355;3.87e-09;58!CL:0000514;4.41e-09;43 | ||
|ontology_enrichment_disease=DOID:2394!9.88e-07!14 | |ontology_enrichment_disease=DOID:2394!9.88e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;9.63e-07;14 | |ontology_enrichment_disease_v019=DOID:2394;9.63e-07;14 | ||
|ontology_enrichment_disease_v019_2=DOID:2394,9.62e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.87e-17!83;UBERON:0002329!1.87e-17!83;UBERON:0003077!1.87e-17!83;UBERON:0003059!1.87e-17!83;UBERON:0007282!1.87e-17!83;UBERON:0009618!1.87e-17!83;UBERON:0007285!1.87e-17!83;UBERON:0004290!6.18e-16!70;UBERON:0005256!7.92e-16!143;UBERON:0001134!4.81e-15!61;UBERON:0002036!4.81e-15!61;UBERON:0003082!4.81e-15!61;UBERON:0002385!4.83e-15!63;UBERON:0001015!4.83e-15!63;UBERON:0000383!4.83e-15!63;UBERON:0000486!2.53e-13!82;UBERON:0000475!1.75e-12!365;UBERON:0002100!1.13e-11!216;UBERON:0000481!8.34e-11!347;UBERON:0003104!2.24e-09!238;UBERON:0009142!2.24e-09!238;UBERON:0000468!6.29e-09!659;UBERON:0003102!8.51e-09!95;UBERON:0002199!1.85e-07!45;UBERON:0002416!1.85e-07!45;UBERON:0004872!7.21e-07!84;UBERON:0000490!9.82e-07!138 | |ontology_enrichment_uberon=UBERON:0000914!1.87e-17!83;UBERON:0002329!1.87e-17!83;UBERON:0003077!1.87e-17!83;UBERON:0003059!1.87e-17!83;UBERON:0007282!1.87e-17!83;UBERON:0009618!1.87e-17!83;UBERON:0007285!1.87e-17!83;UBERON:0004290!6.18e-16!70;UBERON:0005256!7.92e-16!143;UBERON:0001134!4.81e-15!61;UBERON:0002036!4.81e-15!61;UBERON:0003082!4.81e-15!61;UBERON:0002385!4.83e-15!63;UBERON:0001015!4.83e-15!63;UBERON:0000383!4.83e-15!63;UBERON:0000486!2.53e-13!82;UBERON:0000475!1.75e-12!365;UBERON:0002100!1.13e-11!216;UBERON:0000481!8.34e-11!347;UBERON:0003104!2.24e-09!238;UBERON:0009142!2.24e-09!238;UBERON:0000468!6.29e-09!659;UBERON:0003102!8.51e-09!95;UBERON:0002199!1.85e-07!45;UBERON:0002416!1.85e-07!45;UBERON:0004872!7.21e-07!84;UBERON:0000490!9.82e-07!138 | ||
|ontology_enrichment_uberon_v019=UBERON:0002384;4.02e-09;198!UBERON:0002385;6.74e-08;31!UBERON:0001015;6.74e-08;31!UBERON:0000383;6.74e-08;31!UBERON:0001013;5.32e-07;14!UBERON:0002204;8.64e-07;70 | |ontology_enrichment_uberon_v019=UBERON:0002384;4.02e-09;198!UBERON:0002385;6.74e-08;31!UBERON:0001015;6.74e-08;31!UBERON:0000383;6.74e-08;31!UBERON:0001013;5.32e-07;14!UBERON:0002204;8.64e-07;70 | ||
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| ||
|short_description=p3@COL1A1 | |short_description=p3@COL1A1 | ||
}} | }} |
Revision as of 17:39, 17 November 2012
Short description: | p3@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | 0bp_to_J00113_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | P02452 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.83e-26 | 76 |
muscle precursor cell | 1.22e-16 | 58 |
myoblast | 1.22e-16 | 58 |
multi-potent skeletal muscle stem cell | 1.22e-16 | 58 |
muscle cell | 4.28e-16 | 55 |
electrically responsive cell | 2.92e-15 | 61 |
electrically active cell | 2.92e-15 | 61 |
smooth muscle cell | 1.72e-12 | 43 |
smooth muscle myoblast | 1.72e-12 | 43 |
multi fate stem cell | 2.68e-11 | 427 |
somatic stem cell | 1.65e-10 | 433 |
stem cell | 4.06e-10 | 441 |
skin fibroblast | 4.62e-10 | 23 |
vascular associated smooth muscle cell | 1.61e-08 | 32 |
preadipocyte | 2.02e-08 | 12 |
mesodermal cell | 4.17e-08 | 121 |
stromal cell | 4.73e-08 | 28 |
Ontology term | p-value | n |
---|---|---|
somite | 1.40e-17 | 71 |
presomitic mesoderm | 1.40e-17 | 71 |
presumptive segmental plate | 1.40e-17 | 71 |
dermomyotome | 1.40e-17 | 71 |
trunk paraxial mesoderm | 1.40e-17 | 71 |
dense mesenchyme tissue | 1.46e-17 | 73 |
epithelial vesicle | 2.37e-17 | 78 |
paraxial mesoderm | 5.59e-17 | 72 |
presumptive paraxial mesoderm | 5.59e-17 | 72 |
muscle tissue | 1.38e-16 | 64 |
musculature | 1.38e-16 | 64 |
musculature of body | 1.38e-16 | 64 |
skeletal muscle tissue | 1.38e-16 | 62 |
striated muscle tissue | 1.38e-16 | 62 |
myotome | 1.38e-16 | 62 |
mesenchyme | 4.97e-15 | 160 |
entire embryonic mesenchyme | 4.97e-15 | 160 |
multilaminar epithelium | 3.39e-14 | 83 |
trunk mesenchyme | 4.37e-14 | 122 |
integument | 2.92e-09 | 46 |
integumental system | 2.92e-09 | 46 |
trunk | 1.86e-08 | 199 |
splanchnic layer of lateral plate mesoderm | 5.87e-08 | 83 |
unilaminar epithelium | 6.14e-08 | 148 |
surface structure | 8.17e-08 | 99 |
skin of body | 1.43e-07 | 41 |
adipose tissue | 5.54e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 9.62e-07 | 14 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.