Personal tools

Coexpression cluster:C2123: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 3: Line 3:
|full_id=C2123_pituitary_thyroid_esophagus_kidney_tongue_salivary_throat
|full_id=C2123_pituitary_thyroid_esophagus_kidney_tongue_salivary_throat
|id=C2123
|id=C2123
|ontology_enrichment_celltype=CL:0002076!9.59e-09!43;CL:0000622!3.80e-07!5;CL:0002623!3.91e-07!3;CL:0000223!6.84e-07!59
|ontology_enrichment_celltype=CL:0001014!5.13e-08!2;CL:0001016!5.13e-08!2;CL:0000622!4.20e-07!5
|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0007023!5.13e-22!115;UBERON:0001049!6.06e-13!57;UBERON:0005068!6.06e-13!57;UBERON:0006241!6.06e-13!57;UBERON:0007135!6.06e-13!57;UBERON:0000153!1.01e-12!129;UBERON:0007811!1.01e-12!129;UBERON:0004121!8.47e-12!169;UBERON:0000924!2.96e-11!173;UBERON:0006601!2.96e-11!173;UBERON:0003075!1.09e-10!86;UBERON:0007284!1.09e-10!86;UBERON:0000475!1.83e-10!365;UBERON:0000033!3.06e-10!123;UBERON:0000062!3.08e-10!511;UBERON:0002346!6.96e-10!90;UBERON:0005743!2.19e-09!86;UBERON:0002616!7.59e-09!59;UBERON:0001017!1.85e-08!82;UBERON:0003076!2.13e-08!15;UBERON:0003057!2.13e-08!15;UBERON:0000955!3.33e-08!69;UBERON:0006238!3.33e-08!69;UBERON:0002020!6.80e-08!34;UBERON:0003528!6.80e-08!34;UBERON:0000073!7.24e-08!94;UBERON:0001016!7.24e-08!94;UBERON:0002298!1.47e-07!8;UBERON:0002780!2.85e-07!41;UBERON:0001890!2.85e-07!41;UBERON:0006240!2.85e-07!41;UBERON:0000064!3.09e-07!219;UBERON:0006947!4.88e-07!3;UBERON:0004054!4.88e-07!3;UBERON:0003080!5.12e-07!42
|ontology_enrichment_uberon=UBERON:0007023!8.52e-15!114;UBERON:0000974!1.83e-11!10;UBERON:0006947!5.57e-11!3;UBERON:0004054!5.57e-11!3;UBERON:0006562!1.09e-10!11;UBERON:0000007!9.55e-09!2;UBERON:0001042!2.08e-08!10;UBERON:0009145!2.08e-08!10;UBERON:0005904!2.45e-08!4;UBERON:0000341!2.82e-08!2;UBERON:0003127!8.92e-08!2;UBERON:0000161!1.46e-07!36;UBERON:0002148!2.70e-07!2;UBERON:0006331!2.70e-07!2;UBERON:0009662!2.70e-07!2;UBERON:0002530!4.96e-07!59;UBERON:0000166!6.42e-07!22
|tf_chipseq_enrich=CEBPB#1051;4:7.97114762582482:0.000247638578809083:0.00267568027438876!STAT3#6774;4:10.5194649971542:8.16377768286615e-05:0.00122890858665445
|tf_chipseq_enrich=CEBPB#1051;4:7.97114762582482:0.000247638578809083:0.00267568027438876!STAT3#6774;4:10.5194649971542:8.16377768286615e-05:0.00122890858665445
|tfbs_overrepresentation=0.191353,0.0774498,0.090627,0.0631091,0.257053,0.363996,0.0569281,0.510252,0.043387,0.0341265,0.181435,0.288577,0.243414,0.164339,0.193153,0.0816702,0.183412,0.128744,0.0698403,0.141416,0.243245,0.172742,0.107781,0.124486,0.0550418,0.276459,0.268949,0.119094,0.186914,0.122514,0.26347,0.149094,0.0239693,0.267529,0.0877018,0.111013,0.788552,0.0568767,0.157159,0.0879352,0.126525,0.0326801,0.182216,0.2375,0.157881,0.0480278,0.0503649,0.234372,0.145553,0.158244,0.19996,0.0715789,0.0924421,0.12203,0.255843,0.0508907,0.140644,0.273035,0.103044,0.138225,0.0390464,0.194086,0.142115,0.0999599,0.0720888,0.0667453,0.439574,0.0792005,0.113084,0.216289,0.470097,0.0892037,0.116917,0.155921,0.00995563,0.0227583,0.126543,0.0578308,0.0493551,0.00965832,0.125428,0.290468,0.0562614,0.150119,0.0114792,0.320801,0.0848546,0.268505,0.713984,0.0827752,0.112676,0.0655645,0.12511,0.0626609,0.112199,0.150351,0.690341,0.199405,0.121709,0.347653,0.0759036,0.350158,0.184542,0.0491142,0.280878,0.0541957,0.0883058,0.423154,0.187509,0.34189,0.23573,0.0450707,0.194256,0.0235108,0.132631,0.0447483,0.0270258,0.0748174,0.180926,0.110194,0.215858,0.275495,0.182323,0.112709,0.134107,0.228632,0.119051,0.0196757,0.110868,0.175735,0.078637,0.0985137,0.0755515,0.0302655,0.164103,0.141472,0.085537,0.0730922,0.0438087,0.0052702,0.0302521,0.166414,0.262198,0.202388,0.701894,0.0913381,0.129544,0.110696,0.0515825,0.157774,0.258146,0.186826,0.233377,0.0352845,0.0565357,0.153577,0.0984158,0.29227,0.0683304,0.0447121,0.291455,0.124982,0.152417,0.192028,0.346873,0.149398,0.0530169,0.166112,0.0534404,0.392741,0.00252165,0.179282,0.0103372,0.0715212,0.105131,0.118265,0.182591,0.234755,0.230552,0.0472274,0.205973,0.159869,0.0363736,0.15105,0.0970713,0.155237,0.236268,0.0532055,0.108938,0.224443,0.140245,0.241581,0.160458,0.292792,0.147332,0.0622664,0.102951,0.0795624,0.0891668,0.14349,0.117261,0.0797088,0.0408965,0.0799774,0.177664,0.329956,0.0094037,0.197158,0.265132,0.230439,0.0606832,0.136664,0.158184,0.147626,0.393313,0.218801,0.21271,0.132273,0.0830988,0.134907,0.184613,0.462724,0.202467,0.208718,0.0972471,0.165147,0.180711,0.112956,0.0797807,0.0790532,0.675167,0.476758,0.0553945,0.10068,0.125804,0.122288,0.0624687,0.334388,0.21183,0.275612,0.235571,0.435782,0.128998,0.109226,0.151958,0.178155,0.107176,0.146021,0.463127,0.15291,0.206234,0.238926,0.239646,0.128521,0.1286,0.207017,0.14037,0.259646,0.0916845,0.112868,0.0816983,0.226367,0.211672,0.167038,0.0457509,0.106603,0.106727,0.12083,0.000691559,0.0993998,0.352707,0.0834863,0.324356,0.545829,0.113754,0.0504034,0.169684,0.690367,0.000338943,0.149583,0.153844,0.668426,0.901171,0.888682,0.420045,0.148431,0.332539,0.0457383,0.464128,0.389374,0.594055,0.414547,0.00499259,0.413223,0.639461,0.720642,0.34505,0.369161,0.500422,0.49089,0.687176,0.702495,0.241524,0.45167,0.234628,0.520726,0.143893,0.41477,0.279946,0.524104,0.467825,0.051755,0.751064,0.632838,0.624969,0.460819,0.161502,0.586668,0.322903,0.350886,0.0838963,0.583749,0.398372,0.286293,0.606558,0.708425,0.359128,0.395864,0.109703,0.368633,0.188516,0.109035,0.512763,0.369971,0.578349,0.537928,0.464342,0.683088,0.356005,0.235444,0.804772,0.899283,0.840703,0.349116,0.302142,0.239545,0.432689,0.640367,0.343881,0.730486,0.239383,0.0031052,0.626346,0.316925,0.356561,0.573659,0.211506,0.0883859,0.0962508,0.238465,0.0346954,0.128535,0.6873,0.508325,0.436735,0.651927,0.093482,0.54723,0.280307,0.393583,0.794849,0.0596868,0.0984075,0.293026,0.0537754,0.694744,0.605423,0.372182,0.429205,0.578951,0.365653,0.41035,0.784024,0.35234,0.180014,0.525923,0.291917,0.421082,0.25441,0.202782,0.672876,0.517933,0.584705,0.517001,0.620475,0.926442,0.419676,0.188259,0.189182,0.477589,0.131612,0.546448,0.560187,0.058245,0.198207,0.0616078,0.178485,0.329745,0.175552,0.129238,0.651295,0.370995,0.360161,0.429696,0.386216,0.385297,0.706685,0.0151224,0.627185,0.360203,0.0631823,0.447838,0.289666,0.500627,0.513045,0.452694,0.565545,0.00314045,0.265037,0.629795,0.754776,0.53531,0.341771,0.106541,0.0939249,0.356381,0.184395,0.55524,0.624689,0.206945,0.304719,0.462531,0.296994,0.244339,0.117049,0.0786167,0.00354736,0.0109535,0.433821,0.64428,0.436806,0.576549,0.499072,0.744662,0.734628,0.397546,0.0919254,0.0735469,0.248103,0.102621,0.0760107,0.00128098,0.286156,0.261868,0.541583,0.540322,0.247151,0.146385,0.365815,0.0576261,0.0130551,0.164977,0.175633,0.139918,0.34669,0.0828344,0.4729,0.0238089,0.383126,0.354433,0.48311,0.0614918,0.219485,0.149782,0.136923,0.118103,0.113892,0.207214,0.140201,0.0580534,0.00518407,0.161297,0.168389,0.270152,0.249506,0.0199769,0.0660736,0.108971,0.0879235,0.0301295,0.145546,0.28124,0.417003,0.251882,0.172263,0.243319,0.0637178,0.257309,0.500692,0.166608,0.227224,0.238082,0.219023,0.115115,0.124916,0.0149794,0.28498,0.140114,0.348988,0.00641248,0.224626,0.183585,0.271662,0.03989,0.171436,0.05892,0.0691994,0.268299,0.198844,5.76245e-06,0.127738,0.207615,0.161213,0.118999,0.0737069,0.357807,0.621787,0.178782,0.019419,0.0866228,0.271849,0.282657,0.105411,0.0997542,0.209692,0.248936,0.0725263,0.102587,0.0742013,0.0552936,0.0457886,0.0514927,0.324236,0.220368,0.258624,0.064656,0.226143,0.460406,0.0438521,0.435508,0.281453,0.0522771,0.0787278,0.515487,0.159873,0.142462,0.143935,0.332403,0.0379537,0.6545,0.187953,0.051459,0.114868,0.0726892,0.18732,0.0589328,0.278397,0.245002,0.170848,0.487259,0.302909,0.363016,0.100188,0.223102,0.107653,0.235857,0.419621,0.191914,0.184022,0.216557,0.182956,0.116818,0.389792,0.36316,0.0625685,0.124464,0.544477,0.173134,0.101893,0.142875,0.167635,0.171311,0.787798,0.548036,0.0685131,0.130287,0.0661526,0.0815772,0.0993937,0.122878,0.187329,0.0451012,0.0976639,0.351199,0.833813,0.171375,0.278645,0.365775,0.155708,0.248017,0.22995,0.652972,0.0760151,0.0629459,0.486024,0.0803251,0.226641,0.379174,0.0939463,0.286748,0.367925,0.0471607,0.163865,0.226359,0.404165,0.974549,0.265324,0.279778,0.141699,0.0887743,0.142302,0.0653269,0.125712,0.264432,0.0994829,0.0604041,0.144185,0.0925862,0.289561,0.199201,0.049937,0.172796,0.0595495,0.071232,0.149346,0.121978,0.22302,0.137423,0.284016,0.0754883,0.299492,0.100006,0.362866,0.197817,0.251078,0.279874,0.133127,0.410303,0.223717,0.426452,0.196838,0.0826805,0.246601,0.193021,0.608002,0.202165,0.0946865,0.120618,0.079499,0.18762,0.195618,0.127688,0.201169,0.220353,0.24948,0.178639,0.291976,0.320355,0.364334,0.15547,0.110256,0.415419,0.14794,0.147307,0.240761,0.225961,0.124417,0.335582,0.317428,0.182843,0.130771,0.327768,0.135777,0.147842,0.0339286,0.217363,0.119015,3.17987e-05,0.21618,0.243266,0.107021,0.238657,0.20272,0.392453,0.61565,0.0780061,0.315336,0.230477,0.279823,0.295555,0.502112,0.724669,0.0478217,0.507599,0.170854,0.0575231,0.174063,0.514243,3.84372e-06,0.54832,0.502211,0.296013,0.649813,0.537932,0.459994,0.523209,0.548059,0.25423,0.490559,0.00332016,0.500698,0.472542,0.685908,0.747471,0.529642,0.0943307,0.483077,0.590496,0.603763,0.541914,0.627201,0.938109,0.934991,0.290703,0.622694,0.138899,0.478691,0.360199,0.608176,0.657141,0.824761,0.365494,0.212703,0.56318,0.364079,0.680099,0.579886,0.104625,0.0537414,0.328518,0.545608,0.310552,0.143396,0.483764,0.103928,0.784052,0.209437,0.284058,0.748403,0.598945,0.169076,0.464001,0.152018,0.579004,0.605327,0.839946,0.586133,0.261575,0.257956,0.264245,0.379063,0.326516,0.522925,0.436016,0.475063,0.00163162,0.183837,0.507324,0.126097,0.3955,0.442469,0.212239,0.294954,0.156999,0.35974,0.301684,0.39549,0.234254,0.357409,0.146291,0.137737,0.50338,0.0171443,0.404625,0.759068,0.424691,0.715362,0.479581,0.62689,0.172925,0.642173,0.284496,0.00629645,0.512178,0.563206,0.829402,0.684899,0.263302,0.552023,0.180735,0.189249,0.216102,0.254659,0.109605,0.397869,0.217863,0.226491,0.102502,0.463987,0.627953,0.503881,0.454761,0.639483,0.483658,0.452129,3.68612e-05,8.35017e-07,0.346776,0.00395053,0.545655,0.438176,0.0696091,0.741477,0.385425,0.307816,0.461541,0.386339,0.382854,0.232374,6.09746e-05,0.611661,0.319747,0.136743,0.557967,0.0153563,0.282281,0.612712,0.2536,0.246827,0.202347,0.12664,0.387134,0.198743,0.358813,0.668972,0.0554837,0.148933,0.346636,0.457747,0.348802,0.476541,0.579645,0.447581,0.42505,0.254628,0.713293,0.479347,0.416962,0.632833,0.378333,0.738545,0.264038,0.22798,0.00544189,0.350933,0.263896,0.0446972,0.24452,0.0613938,0.242783,0.0947248,0.000852417,0.210656,0.246234,0.211271,0.0439036,0.267248,0.118257,0.125087,0.215123,0.321224,0.469461,0.0597961,0.266651,0.00871319,0.231754,0.249415,0.283107,0.285648,0.427316,0.391071,0.279553,0.25563,0.240967,0.160955,0.256687,0.0432189,0.122439,0.16188,0.23235,0.290415,0.353147,0.112422,0.170886,0.267687,0.315656,0.284866,0.0887542,0.267811,0.338547,0.147872,0.189388,0.293546,0.210125,0.292967,0.218414,0.0509944,0.0871471,0.0689852,0.0602698,0.341188,0.259328,0.437467,0.201057,0.15696,0.129351,0.141936,0.0786166,0.276997,0.205513,0.282389,0.251421,0.162089,0.330223,0.387837,0.233244,0.207281,0.327401,0.195748,0.27845,0.161712,0.237871,0.239139,0.095257,0.328852,0.332769,0.262022,0.274403,0.266687,0.184534,0.248707,0.31749,0.15156,0.287598,0.313858,0.223773,0.25788,0.181895,0.035332,0.30702,0.202977,0.170837,0.327002,0.28543,0.222656,0.028353,0.127111,0.259989,0.390754,0.355805,0.279739,0.108118,0.259901,0.139723,0.0708274,0.0710478,0.196248,0.102645,0.0539258,0.0709978,0.401939,0.332746,0.271338,0.242121,0.298673,0.244395,0.106889,0.128632,0.0845989,0.159153,0.0842401,0.13698,0.0874421,0.100355,0.167854,0.142846,0.0583767,0.088258,0.117657,0.0486914,0.175784,0.262778,0.373453,0.362662,0.433518,0.184359,0.334474,0.325785,0.257476,0.291176,0.376537,0.0588457,0.229571,0.359036,0.335984,0.171704,0.208256,0.265058,0.256405,0.362898,0.302133,0.0976762,0.151361,0.279606,0.00499935,0.150674,0.251128,0.246177,0.35674,0.35852,0.318525,0.213257,0.287217,0.122782,0.0167026,0.289049,0.266974,0.125746,0.112897,0.398354,0.222091,0.205977,0.0675312,0.0936726,0.0671916,0.132374,0.285122,0.22741,0.203996,0.0424072,0.321965,0.264707,0.450113
|tfbs_overrepresentation=0.191353,0.0774498,0.090627,0.0631091,0.257053,0.363996,0.0569281,0.510252,0.043387,0.0341265,0.181435,0.288577,0.243414,0.164339,0.193153,0.0816702,0.183412,0.128744,0.0698403,0.141416,0.243245,0.172742,0.107781,0.124486,0.0550418,0.276459,0.268949,0.119094,0.186914,0.122514,0.26347,0.149094,0.0239693,0.267529,0.0877018,0.111013,0.788552,0.0568767,0.157159,0.0879352,0.126525,0.0326801,0.182216,0.2375,0.157881,0.0480278,0.0503649,0.234372,0.145553,0.158244,0.19996,0.0715789,0.0924421,0.12203,0.255843,0.0508907,0.140644,0.273035,0.103044,0.138225,0.0390464,0.194086,0.142115,0.0999599,0.0720888,0.0667453,0.439574,0.0792005,0.113084,0.216289,0.470097,0.0892037,0.116917,0.155921,0.00995563,0.0227583,0.126543,0.0578308,0.0493551,0.00965832,0.125428,0.290468,0.0562614,0.150119,0.0114792,0.320801,0.0848546,0.268505,0.713984,0.0827752,0.112676,0.0655645,0.12511,0.0626609,0.112199,0.150351,0.690341,0.199405,0.121709,0.347653,0.0759036,0.350158,0.184542,0.0491142,0.280878,0.0541957,0.0883058,0.423154,0.187509,0.34189,0.23573,0.0450707,0.194256,0.0235108,0.132631,0.0447483,0.0270258,0.0748174,0.180926,0.110194,0.215858,0.275495,0.182323,0.112709,0.134107,0.228632,0.119051,0.0196757,0.110868,0.175735,0.078637,0.0985137,0.0755515,0.0302655,0.164103,0.141472,0.085537,0.0730922,0.0438087,0.0052702,0.0302521,0.166414,0.262198,0.202388,0.701894,0.0913381,0.129544,0.110696,0.0515825,0.157774,0.258146,0.186826,0.233377,0.0352845,0.0565357,0.153577,0.0984158,0.29227,0.0683304,0.0447121,0.291455,0.124982,0.152417,0.192028,0.346873,0.149398,0.0530169,0.166112,0.0534404,0.392741,0.00252165,0.179282,0.0103372,0.0715212,0.105131,0.118265,0.182591,0.234755,0.230552,0.0472274,0.205973,0.159869,0.0363736,0.15105,0.0970713,0.155237,0.236268,0.0532055,0.108938,0.224443,0.140245,0.241581,0.160458,0.292792,0.147332,0.0622664,0.102951,0.0795624,0.0891668,0.14349,0.117261,0.0797088,0.0408965,0.0799774,0.177664,0.329956,0.0094037,0.197158,0.265132,0.230439,0.0606832,0.136664,0.158184,0.147626,0.393313,0.218801,0.21271,0.132273,0.0830988,0.134907,0.184613,0.462724,0.202467,0.208718,0.0972471,0.165147,0.180711,0.112956,0.0797807,0.0790532,0.675167,0.476758,0.0553945,0.10068,0.125804,0.122288,0.0624687,0.334388,0.21183,0.275612,0.235571,0.435782,0.128998,0.109226,0.151958,0.178155,0.107176,0.146021,0.463127,0.15291,0.206234,0.238926,0.239646,0.128521,0.1286,0.207017,0.14037,0.259646,0.0916845,0.112868,0.0816983,0.226367,0.211672,0.167038,0.0457509,0.106603,0.106727,0.12083,0.000691559,0.0993998,0.352707,0.0834863,0.324356,0.545829,0.113754,0.0504034,0.169684,0.690367,0.000338943,0.149583,0.153844,0.668426,0.901171,0.888682,0.420045,0.148431,0.332539,0.0457383,0.464128,0.389374,0.594055,0.414547,0.00499259,0.413223,0.639461,0.720642,0.34505,0.369161,0.500422,0.49089,0.687176,0.702495,0.241524,0.45167,0.234628,0.520726,0.143893,0.41477,0.279946,0.524104,0.467825,0.051755,0.751064,0.632838,0.624969,0.460819,0.161502,0.586668,0.322903,0.350886,0.0838963,0.583749,0.398372,0.286293,0.606558,0.708425,0.359128,0.395864,0.109703,0.368633,0.188516,0.109035,0.512763,0.369971,0.578349,0.537928,0.464342,0.683088,0.356005,0.235444,0.804772,0.899283,0.840703,0.349116,0.302142,0.239545,0.432689,0.640367,0.343881,0.730486,0.239383,0.0031052,0.626346,0.316925,0.356561,0.573659,0.211506,0.0883859,0.0962508,0.238465,0.0346954,0.128535,0.6873,0.508325,0.436735,0.651927,0.093482,0.54723,0.280307,0.393583,0.794849,0.0596868,0.0984075,0.293026,0.0537754,0.694744,0.605423,0.372182,0.429205,0.578951,0.365653,0.41035,0.784024,0.35234,0.180014,0.525923,0.291917,0.421082,0.25441,0.202782,0.672876,0.517933,0.584705,0.517001,0.620475,0.926442,0.419676,0.188259,0.189182,0.477589,0.131612,0.546448,0.560187,0.058245,0.198207,0.0616078,0.178485,0.329745,0.175552,0.129238,0.651295,0.370995,0.360161,0.429696,0.386216,0.385297,0.706685,0.0151224,0.627185,0.360203,0.0631823,0.447838,0.289666,0.500627,0.513045,0.452694,0.565545,0.00314045,0.265037,0.629795,0.754776,0.53531,0.341771,0.106541,0.0939249,0.356381,0.184395,0.55524,0.624689,0.206945,0.304719,0.462531,0.296994,0.244339,0.117049,0.0786167,0.00354736,0.0109535,0.433821,0.64428,0.436806,0.576549,0.499072,0.744662,0.734628,0.397546,0.0919254,0.0735469,0.248103,0.102621,0.0760107,0.00128098,0.286156,0.261868,0.541583,0.540322,0.247151,0.146385,0.365815,0.0576261,0.0130551,0.164977,0.175633,0.139918,0.34669,0.0828344,0.4729,0.0238089,0.383126,0.354433,0.48311,0.0614918,0.219485,0.149782,0.136923,0.118103,0.113892,0.207214,0.140201,0.0580534,0.00518407,0.161297,0.168389,0.270152,0.249506,0.0199769,0.0660736,0.108971,0.0879235,0.0301295,0.145546,0.28124,0.417003,0.251882,0.172263,0.243319,0.0637178,0.257309,0.500692,0.166608,0.227224,0.238082,0.219023,0.115115,0.124916,0.0149794,0.28498,0.140114,0.348988,0.00641248,0.224626,0.183585,0.271662,0.03989,0.171436,0.05892,0.0691994,0.268299,0.198844,5.76245e-06,0.127738,0.207615,0.161213,0.118999,0.0737069,0.357807,0.621787,0.178782,0.019419,0.0866228,0.271849,0.282657,0.105411,0.0997542,0.209692,0.248936,0.0725263,0.102587,0.0742013,0.0552936,0.0457886,0.0514927,0.324236,0.220368,0.258624,0.064656,0.226143,0.460406,0.0438521,0.435508,0.281453,0.0522771,0.0787278,0.515487,0.159873,0.142462,0.143935,0.332403,0.0379537,0.6545,0.187953,0.051459,0.114868,0.0726892,0.18732,0.0589328,0.278397,0.245002,0.170848,0.487259,0.302909,0.363016,0.100188,0.223102,0.107653,0.235857,0.419621,0.191914,0.184022,0.216557,0.182956,0.116818,0.389792,0.36316,0.0625685,0.124464,0.544477,0.173134,0.101893,0.142875,0.167635,0.171311,0.787798,0.548036,0.0685131,0.130287,0.0661526,0.0815772,0.0993937,0.122878,0.187329,0.0451012,0.0976639,0.351199,0.833813,0.171375,0.278645,0.365775,0.155708,0.248017,0.22995,0.652972,0.0760151,0.0629459,0.486024,0.0803251,0.226641,0.379174,0.0939463,0.286748,0.367925,0.0471607,0.163865,0.226359,0.404165,0.974549,0.265324,0.279778,0.141699,0.0887743,0.142302,0.0653269,0.125712,0.264432,0.0994829,0.0604041,0.144185,0.0925862,0.289561,0.199201,0.049937,0.172796,0.0595495,0.071232,0.149346,0.121978,0.22302,0.137423,0.284016,0.0754883,0.299492,0.100006,0.362866,0.197817,0.251078,0.279874,0.133127,0.410303,0.223717,0.426452,0.196838,0.0826805,0.246601,0.193021,0.608002,0.202165,0.0946865,0.120618,0.079499,0.18762,0.195618,0.127688,0.201169,0.220353,0.24948,0.178639,0.291976,0.320355,0.364334,0.15547,0.110256,0.415419,0.14794,0.147307,0.240761,0.225961,0.124417,0.335582,0.317428,0.182843,0.130771,0.327768,0.135777,0.147842,0.0339286,0.217363,0.119015,3.17987e-05,0.21618,0.243266,0.107021,0.238657,0.20272,0.392453,0.61565,0.0780061,0.315336,0.230477,0.279823,0.295555,0.502112,0.724669,0.0478217,0.507599,0.170854,0.0575231,0.174063,0.514243,3.84372e-06,0.54832,0.502211,0.296013,0.649813,0.537932,0.459994,0.523209,0.548059,0.25423,0.490559,0.00332016,0.500698,0.472542,0.685908,0.747471,0.529642,0.0943307,0.483077,0.590496,0.603763,0.541914,0.627201,0.938109,0.934991,0.290703,0.622694,0.138899,0.478691,0.360199,0.608176,0.657141,0.824761,0.365494,0.212703,0.56318,0.364079,0.680099,0.579886,0.104625,0.0537414,0.328518,0.545608,0.310552,0.143396,0.483764,0.103928,0.784052,0.209437,0.284058,0.748403,0.598945,0.169076,0.464001,0.152018,0.579004,0.605327,0.839946,0.586133,0.261575,0.257956,0.264245,0.379063,0.326516,0.522925,0.436016,0.475063,0.00163162,0.183837,0.507324,0.126097,0.3955,0.442469,0.212239,0.294954,0.156999,0.35974,0.301684,0.39549,0.234254,0.357409,0.146291,0.137737,0.50338,0.0171443,0.404625,0.759068,0.424691,0.715362,0.479581,0.62689,0.172925,0.642173,0.284496,0.00629645,0.512178,0.563206,0.829402,0.684899,0.263302,0.552023,0.180735,0.189249,0.216102,0.254659,0.109605,0.397869,0.217863,0.226491,0.102502,0.463987,0.627953,0.503881,0.454761,0.639483,0.483658,0.452129,3.68612e-05,8.35017e-07,0.346776,0.00395053,0.545655,0.438176,0.0696091,0.741477,0.385425,0.307816,0.461541,0.386339,0.382854,0.232374,6.09746e-05,0.611661,0.319747,0.136743,0.557967,0.0153563,0.282281,0.612712,0.2536,0.246827,0.202347,0.12664,0.387134,0.198743,0.358813,0.668972,0.0554837,0.148933,0.346636,0.457747,0.348802,0.476541,0.579645,0.447581,0.42505,0.254628,0.713293,0.479347,0.416962,0.632833,0.378333,0.738545,0.264038,0.22798,0.00544189,0.350933,0.263896,0.0446972,0.24452,0.0613938,0.242783,0.0947248,0.000852417,0.210656,0.246234,0.211271,0.0439036,0.267248,0.118257,0.125087,0.215123,0.321224,0.469461,0.0597961,0.266651,0.00871319,0.231754,0.249415,0.283107,0.285648,0.427316,0.391071,0.279553,0.25563,0.240967,0.160955,0.256687,0.0432189,0.122439,0.16188,0.23235,0.290415,0.353147,0.112422,0.170886,0.267687,0.315656,0.284866,0.0887542,0.267811,0.338547,0.147872,0.189388,0.293546,0.210125,0.292967,0.218414,0.0509944,0.0871471,0.0689852,0.0602698,0.341188,0.259328,0.437467,0.201057,0.15696,0.129351,0.141936,0.0786166,0.276997,0.205513,0.282389,0.251421,0.162089,0.330223,0.387837,0.233244,0.207281,0.327401,0.195748,0.27845,0.161712,0.237871,0.239139,0.095257,0.328852,0.332769,0.262022,0.274403,0.266687,0.184534,0.248707,0.31749,0.15156,0.287598,0.313858,0.223773,0.25788,0.181895,0.035332,0.30702,0.202977,0.170837,0.327002,0.28543,0.222656,0.028353,0.127111,0.259989,0.390754,0.355805,0.279739,0.108118,0.259901,0.139723,0.0708274,0.0710478,0.196248,0.102645,0.0539258,0.0709978,0.401939,0.332746,0.271338,0.242121,0.298673,0.244395,0.106889,0.128632,0.0845989,0.159153,0.0842401,0.13698,0.0874421,0.100355,0.167854,0.142846,0.0583767,0.088258,0.117657,0.0486914,0.175784,0.262778,0.373453,0.362662,0.433518,0.184359,0.334474,0.325785,0.257476,0.291176,0.376537,0.0588457,0.229571,0.359036,0.335984,0.171704,0.208256,0.265058,0.256405,0.362898,0.302133,0.0976762,0.151361,0.279606,0.00499935,0.150674,0.251128,0.246177,0.35674,0.35852,0.318525,0.213257,0.287217,0.122782,0.0167026,0.289049,0.266974,0.125746,0.112897,0.398354,0.222091,0.205977,0.0675312,0.0936726,0.0671916,0.132374,0.285122,0.22741,0.203996,0.0424072,0.321965,0.264707,0.450113
}}
}}

Revision as of 12:05, 19 October 2012


Full id: C2123_pituitary_thyroid_esophagus_kidney_tongue_salivary_throat



Phase1 CAGE Peaks

Hg19::chr11:27062483..27062497,+p10@BBOX1
Hg19::chr11:27062502..27062512,+p13@BBOX1
Hg19::chr11:27062521..27062534,+p11@BBOX1
Hg19::chr11:27062537..27062557,+p9@BBOX1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data


No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
CD1a-positive Langerhans cell5.13e-082
immature CD1a-positive Langerhans cell5.13e-082
acinar cell4.20e-075
Uber Anatomy
Ontology termp-valuen
adult organism8.52e-15114
neck1.83e-1110
male genital duct5.57e-113
internal male genitalia5.57e-113
pharynx1.09e-1011
pituitary gland9.55e-092
chordate pharynx2.08e-0810
pharyngeal region of foregut2.08e-0810
duct of male reproductive system2.45e-084
throat2.82e-082
open tracheal system trachea8.92e-082
orifice1.46e-0736
locus ceruleus2.70e-072
brainstem nucleus2.70e-072
hindbrain nucleus2.70e-072
gland4.96e-0759
oral opening6.42e-0722


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data


(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
CEBPB#105147.971147625824820.0002476385788090830.00267568027438876
STAT3#6774410.51946499715428.16377768286615e-050.00122890858665445



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data


This analysis result is provided for C0 - C305 clusters.