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MCL coexpression mm9:2800: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002113!9.99e-21!14;UBERON:0003918!9.99e-21!14;UBERON:0011143!9.99e-21!14;UBERON:0005095!9.99e-21!14;UBERON:0007687!9.99e-21!14;UBERON:0001008!3.17e-20!19;UBERON:0006554!2.60e-18!18;UBERON:0000489!8.24e-13!21;UBERON:0000474!2.16e-11!9;UBERON:0003134!2.00e-09!8;UBERON:0003100!4.31e-09!11;UBERON:0003103!6.19e-09!43;UBERON:0005156!4.48e-08!26;UBERON:0000990!4.48e-08!26;UBERON:0000992!9.39e-07!3
}}
}}

Revision as of 19:03, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr12:8308787..8308801,-p1@Gdf7
Mm9::chr12:8308812..8308824,-p2@Gdf7
Mm9::chr6:117887704..117887715,-p3@Fxyd4


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
kidney9.99e-2114
kidney mesenchyme9.99e-2114
upper urinary tract9.99e-2114
kidney rudiment9.99e-2114
kidney field9.99e-2114
renal system3.17e-2019
urinary system structure2.60e-1818
cavitated compound organ8.24e-1321
female reproductive system2.16e-119
female reproductive organ2.00e-098
female organism4.31e-0911
compound organ6.19e-0943
reproductive structure4.48e-0826
reproductive system4.48e-0826
female gonad9.39e-073


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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