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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000540!5.67e-19!33;CL:0000047!5.67e-19!33;CL:0000031!5.67e-19!33;CL:0000404!5.67e-19!33;CL:0000221!1.32e-16!44;CL:0000133!1.32e-16!44;CL:0002319!1.68e-16!43;CL:0000117!4.68e-16!23;CL:0000337!4.68e-16!23;CL:0000393!5.39e-14!39;CL:0000211!5.39e-14!39;CL:0000055!1.03e-12!49
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0001017!2.42e-40!73;UBERON:0002346!1.92e-39!64;UBERON:0003075!1.92e-39!64;UBERON:0007284!1.92e-39!64;UBERON:0001016!2.03e-39!75;UBERON:0004121!5.55e-39!95;UBERON:0000924!5.55e-39!95;UBERON:0006601!5.55e-39!95;UBERON:0010371!3.93e-33!73;UBERON:0003056!8.53e-33!49;UBERON:0000073!1.49e-32!54;UBERON:0001049!8.54e-31!52;UBERON:0005068!8.54e-31!52;UBERON:0006241!8.54e-31!52;UBERON:0007135!8.54e-31!52;UBERON:0000955!7.10e-28!47;UBERON:0006238!7.10e-28!47;UBERON:0002616!3.55e-27!46;UBERON:0003080!8.44e-26!40;UBERON:0002780!2.41e-25!39;UBERON:0001890!2.41e-25!39;UBERON:0006240!2.41e-25!39;UBERON:0010314!4.41e-23!92;UBERON:0002020!6.87e-23!34;UBERON:0003528!5.76e-20!29;UBERON:0002791!5.76e-20!29;UBERON:0001893!5.76e-20!29;UBERON:0000956!1.32e-14!21;UBERON:0001869!1.32e-14!21;UBERON:0000203!1.32e-14!21;UBERON:0002619!9.92e-12!17;UBERON:0002021!1.67e-09!10;UBERON:0000411!1.67e-09!10;UBERON:0001950!1.67e-09!10;UBERON:0000970!1.61e-07!9;UBERON:0000019!1.61e-07!9;UBERON:0000047!1.61e-07!9;UBERON:0010312!1.61e-07!9;UBERON:0004088!1.61e-07!9;UBERON:0002104!1.61e-07!9;UBERON:0001456!1.61e-07!9;UBERON:0003072!1.61e-07!9;UBERON:0004128!1.61e-07!9;UBERON:0003071!1.61e-07!9
}}
}}

Revision as of 17:14, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr13:83860887..83860890,+p4@ENSMUST00000131907
Mm9::chr3:94282276..94282288,+p2@Celf3
Mm9::chr6:112897240..112897271,-p1@Srgap3
Mm9::chr7:71646573..71646588,+p3@Apba2
Mm9::chr7:71646613..71646624,+p9@Apba2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
central nervous system2.42e-4073
neurectoderm1.92e-3964
neural plate1.92e-3964
presumptive neural plate1.92e-3964
nervous system2.03e-3975
ectoderm-derived structure5.55e-3995
ectoderm5.55e-3995
presumptive ectoderm5.55e-3995
ecto-epithelium3.93e-3373
pre-chordal neural plate8.53e-3349
regional part of nervous system1.49e-3254
neural tube8.54e-3152
neural rod8.54e-3152
future spinal cord8.54e-3152
neural keel8.54e-3152
brain7.10e-2847
future brain7.10e-2847
regional part of brain3.55e-2746
anterior neural tube8.44e-2640
regional part of forebrain2.41e-2539
forebrain2.41e-2539
future forebrain2.41e-2539
structure with developmental contribution from neural crest4.41e-2392
gray matter6.87e-2334
brain grey matter5.76e-2029
regional part of telencephalon5.76e-2029
telencephalon5.76e-2029
cerebral cortex1.32e-1421
cerebral hemisphere1.32e-1421
pallium1.32e-1421
regional part of cerebral cortex9.92e-1217
occipital lobe1.67e-0910
visual cortex1.67e-0910
neocortex1.67e-0910
eye1.61e-079
camera-type eye1.61e-079
simple eye1.61e-079
immature eye1.61e-079
ocular region1.61e-079
visual system1.61e-079
face1.61e-079
optic cup1.61e-079
optic vesicle1.61e-079
eye primordium1.61e-079


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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