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MacroAPE 1083:2-CCTTTTAA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;0.576;521.856;22.464;31.104!2;0.576;548.352;26.496;0.576!3;18.432;65.664;0.576;491.328!4;9.216;27.648;0.576;538.56!5;111.168;53.568;22.464;3...")
 
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9A2;0.0164751!12181-129A3;0.042362!12176-128I7;0.106752!12177-128I8;0.0282795!12182-129A4;0.0296876!12183-129A5;0.069714!12184-129A6;0.0427502!10809-111A8;0.184351!10597-108E3;0.0522785!10717-109I6;0.340021!10455-106G5;0.589045!10534-107G3;0.00250319!10429-106D6;5.40662e-07!10464-106H5;0.0065361!10827-111C8;0.0424412!10789-110H6;0.00115187!10828-111C9;0.000489028!10788-110H5;0.00127844!10792-110H9;8.10908e-05!10765-110E9;0.000219294!10829-111D1;0.00366751!10830-111D2;0.000368109!10831-111D3;0.000160938!10832-111D4;0.0028642!10833-111D5;0.00253607!10764-110E8;0.0259538!10770-110F5;0.223133!10399-106A3;0.00368156!10400-106A4;0.0105019!10405-106A9;0.0129299!10834-111D6;0.00413067!10835-111D7;0.0120141!10836-111D8;0.000804578!10837-111D9;0.00146098!10699-109G6;0.00145411!10802-111A1;2.64874e-05!10796-110I4;0.0192445!10010-101C1;0.375163!10810-111A9;0.183186!10421-106C7;0.965506!10708-109H6;0.00727056!12235-129G3;0.334325!12236-129G4;0.838888!12237-129G5;0.238093!10167-103B5;0.893773!10151-102I7;0.66649!10428-106D5;0.865622!10795-110I3;0.135467!10805-111A4;0.0238657!10052-101G7;0.116613!10189-103D9;2.52995e-07!10589-108D4;0.246963!10425-106D2;0.0585274!10427-106D4;0.421984!10702-109G9;0.0728941!10432-106D9;0.301453!10496-107C1;0.673599!10718-109I7;0.404532!10011-101C2;0.0870674!10053-101G8;0.0674012!10686-109F2;0.470703!10084-102B3;0.702655!10012-101C3;0.197216!10085-102B4;0.994124!10482-107A5;0.426162!10419-106C5;0.505113!10080-102A8;0.570148!10760-110E4;0.00754409!10709-109H7;0.290708!10710-109H8;0.841705!10703-109H1;0.275735!10719-109I8;0.0886918!10642-109A3;0.0777069!10177-103C6;0.440265!10164-103B2;0.342853!10173-103C2;0.481401!10166-103B4;0.246921!10083-102B2;0.586278!10188-103D8;0.604373!10552-107I3;0.286487!10553-107I4;0.0454982!10013-101C4;0.183385!10536-107G5;0.111549!10618-108G6;0.0564387!10423-106C9;0.700304!10785-110H2;0.690253!12238-129G6;0.959477!12239-129G7;0.256051!12240-129G8;0.232088!10416-106C2;0.65707!10801-110I9;0.0240487!10766-110F1;0.00211874!10824-111C5;0.080025!10825-111C6;0.00148698!10826-111C7;0.00127518!10454-106G4;0.0027758!10409-106B4;0.0012052!10638-108I8;0.0166005!10636-108I6;0.736991!10513-107D9;0.414486!10420-106C6;0.486659!10082-102B1;0.039228!10014-101C5;0.00192405!10070-101I7;0.0244741!10452-106G2;0.0789528!10453-106G3;0.117138!10449-106F8;0.0431865!10042-101F6;0.0204009!10069-101I6;0.410857!10193-103E4;0.69026!10631-108I1;0.843435!10438-106E6;0.000111228!10488-107B2;0.245579!10196-103E7;0.402603!10071-101I8;0.199829!10071-101I8;0.0757!10041-101F5;0.482466!10451-106G1;0.212791!10450-106F9;0.670831!10604-108F1;0.0653166!10605-108F2;0.255848!10606-108F3;0.0108299!10603-108E9;0.0864876!10497-107C2;0.621012!10448-106F7;0.342224!10643-109A4;0.197621!10426-106D3;0.70314!10431-106D8;0.346857!10197-103E8;0.617506!10443-106F2;0.171188!10815-111B5;0.899047!10816-111B6;0.712374!10817-111B7;0.619749!10015-101C6;0.686579!10410-106B5;0.0479075!10054-101G9;0.596015!10758-110E2;0.172704!10711-109H9;0.734155!10040-101F4;0.0105752!10470-106I2;0.629235!10415-106C1;0.349738!10198-103E9;0.330596!10614-108G2;0.011005!10612-108F9;0.0037507!10549-107H9;0.40919!10615-108G3;0.156272!10487-107B1;0.0821362!10433-106E1;0.0720694!10688-109F4;0.660418!10444-106F3;0.602925!10444-106F3;0.146008!10485-107A8;0.178289!10413-106B8;0.918808!10175-103C4;0.506657!10161-103A8;0.840918!12131-128D7;0.828192!10624-108H3;0.0244693!10712-109I1;0.0727483!10205-103F7;0.65727!10206-103F8;0.470776!10207-103F9;0.494298!10050-101G5;0.0187495!10051-101G6;0.12313!10016-101C7;0.385522!10046-101G1;0.41632!10778-110G4;0.795025!10633-108I3;0.0919122!10818-111B8;0.212663!10819-111B9;0.339202!10820-111C1;0.324248!10484-107A7;0.299971!10808-111A7;0.410825!10169-103B7;0.00959659!10153-102I9;0.618684!13425-144D5;0.919351!13433-144E4;0.203984!13437-144E8;0.573354!11904-125F5;0.892604!11905-125F6;0.834569!10039-101F3;0.239767!10791-110H8;0.768444!10017-101C8;0.8078!10045-101F9;0.0434128!10509-107D5;0.193201!10839-111E2;0.226307!10692-109F8;0.0087585!10079-102A7;0.0974681!10078-102A6;0.702026!10721-110A1;0.583991!10569-108B2;0.178234!10570-108B3;0.176897!10571-108B4;0.375665!10647-109A8;0.891352!10752-110D5;0.613942!10782-110G8;0.026141!10726-110A6;0.609346!10018-101C9;0.141192!10086-102B5;0.55438!10182-103D2;0.128788!10165-103B3;0.637481!10499-107C4;0.794324!10408-106B3;0.430279!10019-101D1;0.621472!10068-101I5;0.0468683!10075-102A3;0.473331!10077-102A5;0.0774966!10727-110A7;0.825036!10775-110G1;0.0756246!10412-106B7;0.00143545!12231-129F8;0.872001!12232-129F9;0.000784357!12233-129G1;0.0184531!12234-129G2;0.0219298!10414-106B9;0.0985634!10170-103B8;0.10231!10183-103D3;0.479222!10150-102I6;0.319345!10174-103C3;0.475065!10155-103A2;0.748533!10038-101F2;0.697835!10838-111E1;0.388762!10759-110E3;0.75252!10514-107E1;0.813328!10465-106H6;0.383274!10691-109F7;0.257003!10843-111E6;0.0142301!10844-111E7;0.0481688!11747-123G1;0.289101!11748-123G2;0.66027!11749-123G3;0.511078!11750-123G4;0.780667!11751-123G5;0.419455!11840-124H4;0.661795!11752-123G6;0.866677!11753-123G7;0.348575!11754-123G8;0.461923!11755-123G9;0.88659!11756-123H1;0.837947!11833-124G6;0.514068!11760-123H5;0.753796!11836-124G9;0.210369!11758-123H3;0.493849!11835-124G8;0.368039!11762-123H7;0.0423015!11838-124H2;0.0496105!11757-123H2;0.101418!11759-123H4;0.682569!11761-123H6;0.206637!11842-124H6;0.399091!11837-124H1;0.0457805!10568-108B1;0.0951398!13230-141I8;0.874198!13231-141I9;0.810116!10696-109G3;0.500953!10493-107B7;0.512496!10494-107B8;0.00596895!10850-111F4;0.65781!10851-111F5;1.2474e-08!10852-111F6;0.0611911!10853-111F7;0.125867!10854-111F8;0.512779!10855-111F9;0.863003!10856-111G1;0.0107382!10847-111F1;0.39349!10846-111E9;0.671763!10848-111F2;0.745901!10845-111E8;0.47842!10857-111G2;0.253768!10858-111G3;0.0135034!10156-103A3;0.0740269!11901-125F2;0.568177!11902-125F3;0.46998!11903-125F4;0.752754!10689-109F5;0.379818!10648-109A9;0.10904!10784-110H1;0.0416097!10744-110C6;0.653394!10772-110F7;0.804075!10474-106I6;0.00354974!10600-108E6;0.009598!10684-109E9;0.240785!12226-129F3;0.222278!12227-129F4;0.199741!10508-107D4;0.608585!10539-107G8;0.0996479!10607-108F4;0.191225!10555-107I6;0.128388!10774-110F9;0.0755708!10637-108I7;0.309709!10663-109C6;0.051167!10728-110A8;0.982865!10729-110A9;0.384809!10430-106D7;0.129434!10730-110B1;0.000162734!10813-111B3;0.0139158!10812-111B2;0.227264!10037-101F1;0.304332!10172-103C1;0.708102!10163-103B1;0.240365!10076-102A4;0.746224!10073-102A1;0.931503!10036-101E9;0.346846!10195-103E6;0.572396!10277-104E7;0.802195!10434-106E2;0.064394!10550-107I1;0.0698448!10545-107H5;0.432375!10544-107H4;0.222799!10704-109H2;0.564057!10510-107D6;0.0972999!10558-107I9;0.848866!10020-101D2;0.925809!10732-110B3;0.315377!10049-101G4;0.0100434!10698-109G5;0.868936!10437-106E5;0.336339!10417-106C3;0.758781!10035-101E8;0.0387648!10171-103B9;0.897727!10157-103A4;0.477094!10034-101E7;0.565483!10072-101I9;0.921606!10199-103F1;0.147389!10200-103F2;0.36366!10697-109G4;0.101458!10723-110A3;0.224451!10179-103C8;0.79916!10160-103A7;0.54116!10180-103C9;0.0257679!10162-103A9;0.280832!10021-101D3;0.0462107!10840-111E3;0.799999!10706-109H4;0.00270976!10033-101E6;0.96776!10032-101E5;0.756654!10490-107B4;0.759056!10439-106E7;0.584211!10022-101D4;0.989324!10176-103C5;0.358437!10469-106I1;0.37687!10067-101I4;0.672028!10411-106B6;0.0853531!10471-106I3;0.926339!10030-101E3;0.833608!10475-106I7;0.137513!10787-110H4;0.0389485!10477-106I9;0.0615965!10695-109G2;0.0496999!11771-123I7;0.667106!11772-123I8;0.439899!11773-123I9;0.220315!10093-102C3;0.0294616!10442-106F1;0.651107!10442-106F1;0.0339944!10201-103F3;0.068453!10639-108I9;0.323166!11843-124H7;0.539937!11841-124H5;0.0176129!10693-109F9;0.995255!10436-106E4;0.00437498!10483-107A6;0.246601!10282-104F3;0.181741!10023-101D5;0.838564!10066-101I3;0.686531!10065-101I2;0.108756!10800-110I8;0.194462!10610-108F7;0.189461!10841-111E4;0.0774891!10541-107H1;0.656105!10842-111E5;0.016718!10562-108A4;0.349015!10024-101D6;0.351111!10064-101I1;0.146944!10609-108F6;0.296528!10048-101G3;0.0804251!10781-110G7;0.0833033!10181-103D1;0.0100182!10159-103A6;0.7153!10056-101H2;0.350626!10737-110B8;0.160859!10025-101D7;0.282376!10044-101F8;0.604071!10424-106D1;0.127764!10463-106H4;0.0295557!10616-108G4;0.226846!10486-107A9;0.90453!10062-101H8;0.0416414!10202-103F4;0.0472614!10158-103A5;0.194663!10441-106E9;0.772034!10031-101E4;0.12782!10063-101H9;0.51384!10063-101H9;0.32953!11763-123H8;0.505592!11765-123I1;0.738878!11768-123I4;0.447217!10807-111A6;0.430743!10790-110H7;0.935418!10798-110I6;0.200972!10786-110H3;0.863936!10591-108D6;0.22215!10593-108D8;0.539999!10590-108D5;0.585716!10026-101D8;0.0113717!10096-102C6;0.271239!10168-103B6;0.704603!10154-103A1;0.570414!10209-103G2;0.78014!10061-101H7;0.102175!10027-101D9;0.784437!10043-101F7;0.115076!10783-110G9;0.90357!10028-101E1;0.174694!10060-101H6;0.380344!10203-103F5;0.337171!10059-101H5;0.133965!10047-101G2;0.244729!10029-101E2;0.596243!10058-101H4;0.0636344!10418-106C4;0.592114!10492-107B6;0.821551!10694-109G1;0.761698!10797-110I5;0.816309!10057-101H3;0.0448638!10100-102D1;0.222!10055-101H1;0.325533!10204-103F6;0.188622!10191-103E2;0.241789!10563-108A5;0.0459287
|name=2-CCTTTTAA,CNhs10616,BestGuess:TBP.p2.SwissRegulon.nucfreq(0.686755716817853),T:576.0(32.43%),B:9446.6(20.01%),P:1e-34
|name=2-CCTTTTAA,CNhs10616,BestGuess:TBP.p2.SwissRegulon.nucfreq(0.686755716817853),T:576.0(32.43%),B:9446.6(20.01%),P:1e-34
|tomtom_result=RME1#MA0370.1;2;0.00521366;2.4817;1;8;CCTTTTAA;TTCCTTTGGA;-!Hltf#MA0109.1;2;0.0064242;3.05792;1;8;CCTTTTAA;AACCTTATAT;+!TBP#MA0108.2;5;0.0139327;6.63195;1;8;CCTTTTAA;CCCCGCCTTTTATAC;-!TBP#MA0108.2;5;0.0139327;6.63195;1;8;CCTTTTAA;CCCCGCCTTTTATAC;-!B-H1#MA0168.1;-1;0.0168756;8.03278;1;7;CCTTTTAA;CAATTAA;-!Kr#MA0452.1;4;0.0203833;9.70247;1;7;CCTTTTAA;TAACCCTTTTG;-
}}
}}

Latest revision as of 13:33, 7 September 2012

Full Name: 2-CCTTTTAA,CNhs10616,BestGuess:TBP.p2.SwissRegulon.nucfreq(0.686755716817853),T:576.0(32.43%),B:9446.6(20.01%),P:1e-34

Motif matrix
POACGT
10.576521.85622.46431.104
20.576548.35226.4960.576
318.43265.6640.576491.328
49.21627.6480.576538.56
5111.16853.56822.464388.8
60.5760.5760.576574.272
7504.57653.5680.57617.28
8461.37620.73643.77650.112

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
RME1#MA0370.120.005213662.481718CCTTTTAATTCCTTTGGA-
Hltf#MA0109.120.00642423.0579218CCTTTTAAAACCTTATAT+
TBP#MA0108.250.01393276.6319518CCTTTTAACCCCGCCTTTTATAC-
TBP#MA0108.250.01393276.6319518CCTTTTAACCCCGCCTTTTATAC-
B-H1#MA0168.1-10.01687568.0327817CCTTTTAACAATTAA-
Kr#MA0452.140.02038339.7024717CCTTTTAATAACCCTTTTG-
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