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MacroAPE 1083:Motif GGCNCA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;0;52;0!02;0;0;52;0!03;0;52;0;0!04;0;0;0;52!05;0;52;0;0!06;52;0;0;0 |macroape_1083_sample_pvalues=11376-118A8;0.719572!11327-117E4;0.8679...")
 
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0788-110H5;0.943491!10792-110H9;0.925391!10765-110E9;0.454661!10829-111D1;0.891522!10830-111D2;0.761699!10831-111D3;0.936779!10832-111D4;0.633451!10833-111D5;0.739753!10764-110E8;0.761477!10770-110F5;0.850069!10399-106A3;0.832467!10400-106A4;0.788165!10405-106A9;0.794686!10834-111D6;0.811829!10835-111D7;0.716886!10836-111D8;0.466869!10837-111D9;0.531384!10699-109G6;0.475206!10802-111A1;0.798536!10796-110I4;0.402846!10010-101C1;0.692866!10810-111A9;0.427273!10421-106C7;0.264945!10708-109H6;0.483995!12235-129G3;0.424498!12236-129G4;0.130848!12237-129G5;0.869121!10167-103B5;0.0304358!10151-102I7;0.659303!10428-106D5;0.528765!10795-110I3;0.993751!10805-111A4;0.45227!10052-101G7;0.453537!10189-103D9;0.479025!10589-108D4;0.465542!10425-106D2;0.582583!10427-106D4;0.409278!10702-109G9;0.343896!10432-106D9;0.899775!10496-107C1;0.561565!10718-109I7;0.909938!10011-101C2;0.721727!10053-101G8;0.624984!10686-109F2;0.317474!10084-102B3;0.0576386!10012-101C3;0.488926!10085-102B4;0.529855!10482-107A5;0.516058!10419-106C5;0.408153!10080-102A8;0.397318!10760-110E4;0.50921!10709-109H7;0.397374!10710-109H8;0.485916!10703-109H1;0.411093!10719-109I8;0.619839!10642-109A3;0.18384!10177-103C6;0.680832!10164-103B2;0.555982!10173-103C2;0.486778!10166-103B4;0.706484!10083-102B2;0.608106!10188-103D8;0.586016!10552-107I3;0.588575!10553-107I4;0.420094!10013-101C4;0.316285!10536-107G5;0.443008!10618-108G6;0.00394794!10423-106C9;0.602519!10785-110H2;0.472467!12238-129G6;0.618051!12239-129G7;0.838114!12240-129G8;0.512393!10416-106C2;0.613056!10801-110I9;0.538832!10766-110F1;0.910791!10824-111C5;0.5932!10825-111C6;0.703431!10826-111C7;0.685152!10454-106G4;0.675971!10409-106B4;0.653243!10638-108I8;0.529917!10636-108I6;0.369904!10513-107D9;0.636684!10420-106C6;0.373587!10082-102B1;0.191513!10014-101C5;0.557349!10070-101I7;0.38658!10452-106G2;0.665353!10453-106G3;0.543096!10449-106F8;0.475669!10042-101F6;0.582654!10069-101I6;0.392781!10193-103E4;0.707936!10631-108I1;0.431198!10438-106E6;0.559005!10488-107B2;0.721448!10196-103E7;0.252074!10071-101I8;0.684247!10071-101I8;0.481122!10041-101F5;0.692102!10451-106G1;0.317908!10450-106F9;0.435151!10604-108F1;0.317538!10605-108F2;0.120534!10606-108F3;0.111829!10603-108E9;0.13132!10497-107C2;0.171882!10448-106F7;0.388043!10643-109A4;0.214984!10426-106D3;0.419626!10431-106D8;0.437306!10197-103E8;0.375132!10443-106F2;0.511497!10815-111B5;0.374284!10816-111B6;0.501686!10817-111B7;0.48282!10015-101C6;0.526249!10410-106B5;0.527772!10054-101G9;0.370512!10758-110E2;0.291937!10711-109H9;0.194981!10040-101F4;0.35483!10470-106I2;0.627353!10415-106C1;0.545052!10198-103E9;0.443207!10614-108G2;0.325584!10612-108F9;0.216685!10549-107H9;0.608335!10615-108G3;0.459676!10487-107B1;0.231451!10433-106E1;0.309374!10688-109F4;0.425821!10444-106F3;0.928482!10444-106F3;0.0953168!10485-107A8;0.156433!10413-106B8;0.270701!10175-103C4;0.882668!10161-103A8;0.509893!12131-128D7;0.37461!10624-108H3;0.858362!10712-109I1;0.338794!10205-103F7;0.204009!10206-103F8;0.621317!10207-103F9;0.609881!10050-101G5;0.980407!10051-101G6;0.478643!10016-101C7;0.617995!10046-101G1;0.666946!10778-110G4;0.622667!10633-108I3;0.832854!10818-111B8;0.486438!10819-111B9;0.603308!10820-111C1;0.589096!10484-107A7;0.548082!10808-111A7;0.317487!10169-103B7;0.445993!10153-102I9;0.503003!13425-144D5;0.407882!13433-144E4;0.68555!13437-144E8;0.584143!11904-125F5;0.584873!11905-125F6;0.888919!10039-101F3;0.974304!10791-110H8;0.612449!10017-101C8;0.27206!10045-101F9;0.376973!10509-107D5;0.488474!10839-111E2;0.132835!10692-109F8;0.00781548!10079-102A7;0.482606!10078-102A6;0.749657!10721-110A1;0.873319!10569-108B2;0.378793!10570-108B3;0.345884!10571-108B4;0.7262!10647-109A8;0.384207!10752-110D5;0.237324!10782-110G8;0.684365!10726-110A6;0.239564!10018-101C9;0.699936!10086-102B5;0.665048!10182-103D2;0.533584!10165-103B3;0.420665!10499-107C4;0.501227!10408-106B3;0.144939!10019-101D1;0.645855!10068-101I5;0.32766!10075-102A3;0.530731!10077-102A5;0.322641!10727-110A7;0.282983!10775-110G1;0.480846!10412-106B7;0.567871!12231-129F8;0.665808!12232-129F9;0.967505!12233-129G1;0.772655!12234-129G2;0.679792!10414-106B9;0.87925!10170-103B8;0.285145!10183-103D3;0.602729!10150-102I6;0.634055!10174-103C3;0.519995!10155-103A2;0.467524!10038-101F2;0.411484!10838-111E1;0.433441!10759-110E3;0.516457!10514-107E1;0.269107!10465-106H6;0.135217!10691-109F7;0.0931139!10843-111E6;0.193838!10844-111E7;0.513353!11747-123G1;0.880871!11748-123G2;0.368375!11749-123G3;0.499012!11750-123G4;0.695268!11751-123G5;0.433296!11840-124H4;0.954849!11752-123G6;0.888089!11753-123G7;0.677422!11754-123G8;0.898428!11755-123G9;0.826583!11756-123H1;0.615809!11833-124G6;0.832626!11760-123H5;0.829927!11836-124G9;0.69623!11758-123H3;0.849114!11835-124G8;0.847973!11762-123H7;0.588692!11838-124H2;0.79775!11757-123H2;0.888156!11759-123H4;0.603271!11761-123H6;0.819516!11842-124H6;0.43444!11837-124H1;0.543486!10568-108B1;0.632414!13230-141I8;0.162068!13231-141I9;0.984173!10696-109G3;0.835217!10493-107B7;0.494111!10494-107B8;0.336788!10850-111F4;0.959186!10851-111F5;0.836851!10852-111F6;0.716469!10853-111F7;0.396345!10854-111F8;0.525146!10855-111F9;0.263814!10856-111G1;0.54206!10847-111F1;0.855068!10846-111E9;0.736693!10848-111F2;0.950314!10845-111E8;0.540989!10857-111G2;0.458009!10858-111G3;0.303342!10156-103A3;0.0878592!11901-125F2;0.569225!11902-125F3;0.754445!11903-125F4;0.813783!10689-109F5;0.625945!10648-109A9;0.336367!10784-110H1;0.0139811!10744-110C6;0.408671!10772-110F7;0.493246!10474-106I6;0.947941!10600-108E6;0.362938!10684-109E9;0.156914!12226-129F3;0.812355!12227-129F4;0.670409!10508-107D4;0.191276!10539-107G8;0.673472!10607-108F4;0.775407!10555-107I6;0.538084!10774-110F9;0.71208!10637-108I7;0.28662!10663-109C6;0.0865281!10728-110A8;0.265175!10729-110A9;0.327968!10430-106D7;0.778129!10730-110B1;0.594298!10813-111B3;0.491306!10812-111B2;0.573704!10037-101F1;0.895186!10172-103C1;0.589971!10163-103B1;0.695549!10076-102A4;0.47096!10073-102A1;0.650991!10036-101E9;0.767524!10195-103E6;0.538863!10277-104E7;0.602157!10434-106E2;0.850059!10550-107I1;0.335589!10545-107H5;0.432332!10544-107H4;0.329672!10704-109H2;0.428767!10510-107D6;0.0217013!10558-107I9;0.20943!10020-101D2;0.0143415!10732-110B3;0.683347!10049-101G4;0.0100059!10698-109G5;0.488474!10437-106E5;0.378919!10417-106C3;0.277108!10035-101E8;0.785651!10171-103B9;0.615872!10157-103A4;0.658993!10034-101E7;0.526974!10072-101I9;0.612466!10199-103F1;0.736315!10200-103F2;0.321961!10697-109G4;0.481097!10723-110A3;0.337229!10179-103C8;0.404488!10160-103A7;0.565081!10180-103C9;0.459083!10162-103A9;0.89549!10021-101D3;0.841384!10840-111E3;0.60823!10706-109H4;0.401853!10033-101E6;0.000356399!10032-101E5;0.602878!10490-107B4;0.554595!10439-106E7;0.547033!10022-101D4;0.354264!10176-103C5;0.568486!10469-106I1;0.485282!10067-101I4;0.367874!10411-106B6;0.602773!10471-106I3;0.473402!10030-101E3;0.279287!10475-106I7;0.369458!10787-110H4;0.460041!10477-106I9;0.472262!10695-109G2;0.482254!11771-123I7;0.619192!11772-123I8;0.00669808!11773-123I9;0.0258447!10093-102C3;0.742335!10442-106F1;0.431703!10442-106F1;0.174111!10201-103F3;0.261052!10639-108I9;0.616037!11843-124H7;0.939699!11841-124H5;0.0530186!10693-109F9;0.562773!10436-106E4;0.437641!10483-107A6;0.745616!10282-104F3;0.944393!10023-101D5;0.943518!10066-101I3;0.718871!10065-101I2;0.518585!10800-110I8;0.511836!10610-108F7;0.340574!10841-111E4;0.730628!10541-107H1;0.457934!10842-111E5;0.662028!10562-108A4;0.309309!10024-101D6;0.790773!10064-101I1;0.315831!10609-108F6;0.365736!10048-101G3;0.797539!10781-110G7;0.942184!10181-103D1;0.737313!10159-103A6;0.482657!10056-101H2;0.490509!10737-110B8;0.433856!10025-101D7;0.773937!10044-101F8;0.269023!10424-106D1;0.158691!10463-106H4;0.329434!10616-108G4;0.359264!10486-107A9;0.117431!10062-101H8;0.255533!10202-103F4;0.646062!10158-103A5;0.31475!10441-106E9;0.461585!10031-101E4;0.3789!10063-101H9;0.511436!10063-101H9;0.826688!11763-123H8;0.460126!11765-123I1;0.689399!11768-123I4;0.85887!10807-111A6;0.88571!10790-110H7;0.49821!10798-110I6;0.499081!10786-110H3;0.558311!10591-108D6;0.938584!10593-108D8;0.948763!10590-108D5;0.939958!10026-101D8;0.450996!10096-102C6;0.764547!10168-103B6;0.435437!10154-103A1;0.48616!10209-103G2;0.474682!10061-101H7;0.361506!10027-101D9;0.468982!10043-101F7;0.677492!10783-110G9;0.287884!10028-101E1;0.935918!10060-101H6;0.551091!10203-103F5;0.439242!10059-101H5;0.57367!10047-101G2;0.615975!10029-101E2;0.207766!10058-101H4;0.259551!10418-106C4;0.544419!10492-107B6;0.507137!10694-109G1;0.189336!10797-110I5;0.72054!10057-101H3;0.665519!10100-102D1;0.624466!10055-101H1;0.735599!10204-103F6;0.610262!10191-103E2;0.735696!10563-108A5;0.391006
|name=motif_GGCNCA
|name=motif_GGCNCA
|tomtom_result=AP1#MA0099.2;1;0.00682079;3.2467;1;6;GGCTCA;TGACTCA;+!usp#MA0016.1;1;0.00872773;4.1544;1;6;GGCTCA;GGGGTCACGG;+!CRZ1#MA0285.1;2;0.0103755;4.93875;1;6;GGCTCA;GTGGCTTAG;-!MAC1#MA0326.1;2;0.0109267;5.20113;1;6;GGCTCA;TTTGCTCA;+!Fos#MA0099.1;1;0.0131054;6.23817;1;6;GGCTCA;TGACTCAC;-!Six4#MA0204.1;0;0.0202619;9.64467;1;6;GGCTCA;GTATCA;-
}}
}}

Latest revision as of 12:38, 7 September 2012

Full Name: motif_GGCNCA

Motif matrix
POACGT
0100520
0200520
0305200
0400052
0505200
0652000

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
AP1#MA0099.210.006820793.246716GGCTCATGACTCA+
usp#MA0016.110.008727734.154416GGCTCAGGGGTCACGG+
CRZ1#MA0285.120.01037554.9387516GGCTCAGTGGCTTAG-
MAC1#MA0326.120.01092675.2011316GGCTCATTTGCTCA+
Fos#MA0099.110.01310546.2381716GGCTCATGACTCAC-
Six4#MA0204.100.02026199.6446716GGCTCAGTATCA-
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