CL:0002569: Difference between revisions
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|def="A mesenchymal stem cell of the umbilical cord." [GOC:tfm] | |def="A mesenchymal stem cell of the umbilical cord." [GOC:tfm] | ||
|xref= | |xref= | ||
|is_a=CL:0000134 | |is_a=CL:0000134;;CL:0000349 | ||
|synonym= | |synonym= | ||
|comment= | |comment= | ||
| Line 14: | Line 14: | ||
|obo_creation_date=2011-03-01T09:55:12Z | |obo_creation_date=2011-03-01T09:55:12Z | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:27, 26 June 2012
| Name: | mesenchymal stem cell of umbilical cord |
|---|---|
| Namespace: | cell |
| Definition: | "A mesenchymal stem cell of the umbilical cord." [GOC:tfm] |
| Created by: | tmeehan |
| Creation date: | 2011-03-01T09:55:12Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000134(mesenchymal cell),CL:0000349(extraembryonic cell) |
|---|
Children
| is a: | CL:0002568 (mesenchymal stem cell of Wharton's jelly) |
|---|---|
| derives from: | FF:0000094 (human mesenchymal stem cell of umbilical cord-Sciencell sample),FF:0000117 (human mesenchymal stem cell of umbilical cord blood sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11214-116A8 (Mesenchymal stem cells - umbilical, donor0)
- 11539-120A9 (Mesenchymal Stem Cells - umbilical, donor1)
- 11548-120B9 (Mesenchymal Stem Cells - Wharton's Jelly, donor1)
- 11549-120C1 (Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1)
- 11619-122A8 (Mesenchymal Stem Cells - umbilical, donor2)
- 11628-122B8
- 11629-122B9 (Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor2)
- 11700-123A8 (Mesenchymal Stem Cells - umbilical, donor3)
Mouse (Mus musculus)
- 11214-116A8 (Mesenchymal stem cells - umbilical, donor0)
- 11539-120A9 (Mesenchymal Stem Cells - umbilical, donor1)
- 11548-120B9 (Mesenchymal Stem Cells - Wharton's Jelly, donor1)
- 11549-120C1 (Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1)
- 11619-122A8 (Mesenchymal Stem Cells - umbilical, donor2)
- 11628-122B8
- 11629-122B9 (Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor2)
- 11700-123A8 (Mesenchymal Stem Cells - umbilical, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002569 (mesenchymal stem cell of umbilical cord), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 9.96e-60 | FFCP PHASE2:Hg19::chr3:162256416..162256425,-#_41c2842c19ae990c1ffff0be9fb354ca | p@chr3:162256416..162256425, - |
| 9.96e-60 | FFCP PHASE1:Hg19::chr3:162256416..162256425,-#_41c2842c19ae990c1ffff0be9fb354ca | p@chr3:162256416..162256425, - |
| 5.62e-43 | FFCP PHASE2:Hg19::chr3:154801312..154801336,+#_173d13a953e045cdee2751ea04d6ead6 | p29@MME |
| 5.62e-43 | FFCP PHASE1:Hg19::chr3:154801312..154801336,+#_173d13a953e045cdee2751ea04d6ead6 | p29@MME |
| 4.27e-34 | FFCP PHASE2:Hg19::chr6:11354777..11354778,+#_005feb395b0446ebbdf0f3120e8fb78a | p@chr6:11354777..11354778, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr6:11354777..11354778,+#_005feb395b0446ebbdf0f3120e8fb78a | p@chr6:11354777..11354778, + |
| 1.67e-25 | FFCP PHASE2:Hg19::chr17:47039342..47039353,-#_3b2c8ba7f2f3997827da3cae5e4823a8 | p@chr17:47039342..47039353, - |
| 1.67e-25 | FFCP PHASE1:Hg19::chr17:47039342..47039353,-#_3b2c8ba7f2f3997827da3cae5e4823a8 | p@chr17:47039342..47039353, - |
| 6.78e-23 | FFCP PHASE2:Hg19::chr15:68805200..68805208,+#_75b788521b79ae72f27d126a024805fe | p@chr15:68805200..68805208, + |
| 6.78e-23 | FFCP PHASE1:Hg19::chr15:68805200..68805208,+#_75b788521b79ae72f27d126a024805fe | p@chr15:68805200..68805208, + |
| 7.58e-23 | FFCP PHASE2:Hg19::chr13:110840203..110840210,-#_f6f3684e35a52975f0be6b6f14d877a0 | p@chr13:110840203..110840210, - |
| 7.58e-23 | FFCP PHASE1:Hg19::chr13:110840203..110840210,-#_f6f3684e35a52975f0be6b6f14d877a0 | p@chr13:110840203..110840210, - |
| 7.72e-22 | FFCP PHASE1:Hg19::chr8:19615538..19615541,-#_f9faf8a6bd38368dc7111b45c521d120 | p12@CSGALNACT1 |
| 7.72e-22 | FFCP PHASE2:Hg19::chr8:19615538..19615541,-#_f9faf8a6bd38368dc7111b45c521d120 | p12@CSGALNACT1 |
| 2.4e-20 | FFCP PHASE2:Hg19::chr4:174429652..174429665,+#_d5b000900041229066e5ca222eb6c633 | p@chr4:174429652..174429665, + |
| 2.4e-20 | FFCP PHASE1:Hg19::chr4:174429652..174429665,+#_d5b000900041229066e5ca222eb6c633 | p@chr4:174429652..174429665, + |
| 5.89e-20 | FFCP PHASE2:Hg19::chr3:162156271..162156273,-#_ba263175cbcd02df1aac2fe217276b3c | p@chr3:162156271..162156273, - |
| 5.89e-20 | FFCP PHASE1:Hg19::chr3:162156271..162156273,-#_ba263175cbcd02df1aac2fe217276b3c | p@chr3:162156271..162156273, - |
| 7.13e-20 | FFCP PHASE2:Hg19::chr4:174427862..174427899,+#_c09fb7f1ae657455e061bb5af91cdc5b | p@chr4:174427862..174427899, + |
| 7.13e-20 | FFCP PHASE1:Hg19::chr4:174427862..174427899,+#_c09fb7f1ae657455e061bb5af91cdc5b | p@chr4:174427862..174427899, + |
| 1.95e-18 | FFCP PHASE1:Hg19::chr6:137243433..137243444,+#_d6c5a434842905321d5ac4199d91a03f | p2@SLC35D3 |
| 1.95e-18 | FFCP PHASE2:Hg19::chr6:137243433..137243444,+#_d6c5a434842905321d5ac4199d91a03f | p2@SLC35D3 |
| 9.07e-18 | FFCP PHASE2:Hg19::chr5:115626749..115626788,+#_115884388a522f2337475320aa3eb2e0 | p6@COMMD10 |
| 9.07e-18 | FFCP PHASE2:Hg19::chr3:194215033..194215040,-#_115884388a522f2337475320aa3eb2e0 | p@chr3:194215033..194215040, - |
| 9.07e-18 | FFCP PHASE2:Hg19::chr18:43690139..43690142,+#_115884388a522f2337475320aa3eb2e0 | p@chr18:43690139..43690142, + |
| 9.07e-18 | FFCP PHASE1:Hg19::chrX:11502822..11502831,-#_115884388a522f2337475320aa3eb2e0 | p@chrX:11502822..11502831, - |
| 9.07e-18 | FFCP PHASE1:Hg19::chr9:132596981..132596990,-#_115884388a522f2337475320aa3eb2e0 | p6@C9orf78 |
| 9.07e-18 | FFCP PHASE2:Hg19::chrX:11502822..11502831,-#_115884388a522f2337475320aa3eb2e0 | p@chrX:11502822..11502831, - |
| 9.07e-18 | FFCP PHASE2:Hg19::chr9:132596981..132596990,-#_115884388a522f2337475320aa3eb2e0 | p6@C9orf78 |
| 9.07e-18 | FFCP PHASE1:Hg19::chr5:115626749..115626788,+#_115884388a522f2337475320aa3eb2e0 | p6@COMMD10 |
| 9.07e-18 | FFCP PHASE1:Hg19::chr22:31495739..31495756,+#_115884388a522f2337475320aa3eb2e0 | p33@SMTN |
| 9.07e-18 | FFCP PHASE1:Hg19::chr19:18543312..18543351,+#_115884388a522f2337475320aa3eb2e0 | p@chr19:18543312..18543351, + |
| 9.07e-18 | FFCP PHASE1:Hg19::chr3:194215033..194215040,-#_115884388a522f2337475320aa3eb2e0 | p@chr3:194215033..194215040, - |
| 9.07e-18 | FFCP PHASE2:Hg19::chr5:131543465..131543475,-#_115884388a522f2337475320aa3eb2e0 | p@chr5:131543465..131543475, - |
| 9.07e-18 | FFCP PHASE1:Hg19::chr8:42623701..42623709,-#_115884388a522f2337475320aa3eb2e0 | p4@CHRNA6 |
| 9.07e-18 | FFCP PHASE2:Hg19::chr14:101159742..101159785,+#_115884388a522f2337475320aa3eb2e0 | p@chr14:101159742..101159785, + |
| 9.07e-18 | FFCP PHASE2:Hg19::chr8:42623701..42623709,-#_115884388a522f2337475320aa3eb2e0 | p4@CHRNA6 |
| 9.07e-18 | FFCP PHASE1:Hg19::chr14:101159742..101159785,+#_115884388a522f2337475320aa3eb2e0 | p@chr14:101159742..101159785, + |
| 9.07e-18 | FFCP PHASE2:Hg19::chr7:101461145..101461152,+#_115884388a522f2337475320aa3eb2e0 | p@chr7:101461145..101461152, + |
| 9.07e-18 | FFCP PHASE1:Hg19::chr18:43690139..43690142,+#_115884388a522f2337475320aa3eb2e0 | p@chr18:43690139..43690142, + |
| 9.07e-18 | FFCP PHASE1:Hg19::chr7:101461145..101461152,+#_115884388a522f2337475320aa3eb2e0 | p@chr7:101461145..101461152, + |
| 9.07e-18 | FFCP PHASE2:Hg19::chr12:56912838..56912839,+#_115884388a522f2337475320aa3eb2e0 | p@chr12:56912838..56912839, + |
| 9.07e-18 | FFCP PHASE1:Hg19::chr12:56912838..56912839,+#_115884388a522f2337475320aa3eb2e0 | p@chr12:56912838..56912839, + |
| 9.07e-18 | FFCP PHASE1:Hg19::chr5:131543465..131543475,-#_115884388a522f2337475320aa3eb2e0 | p@chr5:131543465..131543475, - |
| 9.07e-18 | FFCP PHASE2:Hg19::chr22:31495739..31495756,+#_115884388a522f2337475320aa3eb2e0 | p33@SMTN |
| 9.07e-18 | FFCP PHASE2:Hg19::chr19:18543312..18543351,+#_115884388a522f2337475320aa3eb2e0 | p@chr19:18543312..18543351, + |
| 1.57e-17 | FFCP PHASE1:Hg19::chr8:37003588..37003608,-#_a7929cd8b6477903b67c6db69f9bbdd6 | p@chr8:37003588..37003608, - |
| 1.57e-17 | FFCP PHASE2:Hg19::chr8:37003588..37003608,-#_a7929cd8b6477903b67c6db69f9bbdd6 | p@chr8:37003588..37003608, - |
| 3.38e-16 | FFCP PHASE1:Hg19::chr1:229041596..229041602,-#_b06ad102618eb39b71627b30d9a786e4 | p@chr1:229041596..229041602, - |
| 3.38e-16 | FFCP PHASE2:Hg19::chr1:229041596..229041602,-#_b06ad102618eb39b71627b30d9a786e4 | p@chr1:229041596..229041602, - |
| 1.07e-15 | FFCP PHASE2:Hg19::chr8:11653468..11653496,+#_1fdffa63be18a434eaccbe7b1882e1a7 | p9@FDFT1 |
| 1.07e-15 | FFCP PHASE1:Hg19::chr8:11653468..11653496,+#_1fdffa63be18a434eaccbe7b1882e1a7 | p9@FDFT1 |
| 1.13e-15 | FFCP PHASE2:Hg19::chr6:25004775..25004790,-#_3d190778fdfeccb7f49e1d7fbaf832c8 | p@chr6:25004775..25004790, - |
| 1.13e-15 | FFCP PHASE1:Hg19::chr6:25004775..25004790,-#_3d190778fdfeccb7f49e1d7fbaf832c8 | p@chr6:25004775..25004790, - |
| 1.22e-15 | FFCP PHASE2:Hg19::chr17:20824400..20824414,+#_f9dba3668b8bb04fb8a0942c797553a3 | p4@ENST00000443508 |
| 1.22e-15 | FFCP PHASE1:Hg19::chr17:20824400..20824414,+#_f9dba3668b8bb04fb8a0942c797553a3 | p4@ENST00000443508 |
| 1.63e-15 | FFCP PHASE2:Hg19::chr5:172901990..172901996,+#_3ed42d22f375aa13ab35acc4f90330c9 | p@chr5:172901990..172901996, + |
| 1.63e-15 | FFCP PHASE1:Hg19::chr5:172901990..172901996,+#_3ed42d22f375aa13ab35acc4f90330c9 | p@chr5:172901990..172901996, + |
| 1.08e-14 | FFCP PHASE2:Hg19::chr17:38698622..38698655,-#_56bc416424d1b372c37b6bb45b498125 | p@chr17:38698622..38698655, - |
| 1.08e-14 | FFCP PHASE1:Hg19::chr17:38698622..38698655,-#_56bc416424d1b372c37b6bb45b498125 | p@chr17:38698622..38698655, - |
| 1.19e-14 | FFCP PHASE1:Hg19::chr2:45233119..45233139,-#_6ac300dbc315c73cae781cc70cb5fc72 | p@chr2:45233119..45233139, - |
| 1.19e-14 | FFCP PHASE2:Hg19::chr2:45233119..45233139,-#_6ac300dbc315c73cae781cc70cb5fc72 | p@chr2:45233119..45233139, - |
| 1.19e-14 | FFCP PHASE2:Hg19::chr7:94060437..94060448,+#_6ac300dbc315c73cae781cc70cb5fc72 | p@chr7:94060437..94060448, + |
| 1.19e-14 | FFCP PHASE1:Hg19::chr7:94060437..94060448,+#_6ac300dbc315c73cae781cc70cb5fc72 | p@chr7:94060437..94060448, + |
| 2.89e-14 | FFCP PHASE2:Hg19::chr11:76381029..76381041,-#_493a9666b38b0c0bc9c259eb33704473 | p6@LRRC32 |
| 2.89e-14 | FFCP PHASE1:Hg19::chr11:76381029..76381041,-#_493a9666b38b0c0bc9c259eb33704473 | p6@LRRC32 |
| 3.04e-14 | FFCP PHASE2:Hg19::chr18:73967189..73967200,-#_60887234d10b41421474048312acb827 | p@chr18:73967189..73967200, - |
| 3.04e-14 | FFCP PHASE1:Hg19::chr18:73967189..73967200,-#_60887234d10b41421474048312acb827 | p@chr18:73967189..73967200, - |
| 3.25e-14 | FFCP PHASE2:Hg19::chr4:8296194..8296199,+#_18c34f99f7a15d09c529f917402ce66c | p@chr4:8296194..8296199, + |
| 3.25e-14 | FFCP PHASE1:Hg19::chr4:8296194..8296199,+#_18c34f99f7a15d09c529f917402ce66c | p@chr4:8296194..8296199, + |
| 1.66e-13 | FFCP PHASE1:Hg19::chr22:43042955..43042964,-#_5abfd694ff80071609ea57ccae2d5192 | p23@CYB5R3 |
| 1.66e-13 | FFCP PHASE2:Hg19::chr22:43042955..43042964,-#_5abfd694ff80071609ea57ccae2d5192 | p23@CYB5R3 |
| 1.9e-13 | FFCP PHASE2:Hg19::chr4:111536708..111536738,-#_2ca72d0276781e55eef7cfd3e38cf9a7 | p1@ENST00000513690 |
| 1.9e-13 | FFCP PHASE1:Hg19::chr4:111536708..111536738,-#_2ca72d0276781e55eef7cfd3e38cf9a7 | p1@ENST00000513690 |
| 3.14e-13 | FFCP PHASE2:Hg19::chr4:1160761..1160774,-#_a03699ba9023f547ee27a7dfa53e7977 | p@chr4:1160761..1160774, - |
| 3.14e-13 | FFCP PHASE1:Hg19::chr4:1160761..1160774,-#_a03699ba9023f547ee27a7dfa53e7977 | p@chr4:1160761..1160774, - |
| 3.49e-13 | FFCP PHASE1:Hg19::chr1:246023985..246024006,-#_85fd793b254b7c467261c0b8fb5759b1 | p@chr1:246023985..246024006, - |
| 3.49e-13 | FFCP PHASE2:Hg19::chr1:246023985..246024006,-#_85fd793b254b7c467261c0b8fb5759b1 | p@chr1:246023985..246024006, - |
| 3.61e-13 | FFCP PHASE2:Hg19::chr11:46316699..46316719,+#_aab2168cb91d60b585f682f7f5d2486a | p10@CREB3L1 |
| 3.61e-13 | FFCP PHASE1:Hg19::chr11:46316699..46316719,+#_aab2168cb91d60b585f682f7f5d2486a | p10@CREB3L1 |
| 4.81e-13 | FFCP PHASE2:Hg19::chr5:59792105..59792117,-#_05d2cbad9dccaa2f0544724398f841ec | p@chr5:59792105..59792117, - |
| 4.81e-13 | FFCP PHASE1:Hg19::chr5:59792105..59792117,-#_05d2cbad9dccaa2f0544724398f841ec | p@chr5:59792105..59792117, - |
| 5.76e-13 | FFCP PHASE2:Hg19::chr6:72970377..72970387,+#_cf489b8c007a43738fb16ca25ec8ed5b | p20@RIMS1 |
| 5.76e-13 | FFCP PHASE1:Hg19::chr6:72970377..72970387,+#_cf489b8c007a43738fb16ca25ec8ed5b | p20@RIMS1 |
| 8.38e-13 | FFCP PHASE2:Hg19::chr4:111558118..111558133,-#_38584f2986238d1573bbc4400339c497 | p5@PITX2 |
| 8.38e-13 | FFCP PHASE1:Hg19::chr4:111558118..111558133,-#_38584f2986238d1573bbc4400339c497 | p5@PITX2 |
| 2.19e-12 | FFCP PHASE2:Hg19::chr7:95979117..95979120,+#_6b2186e99d4e7c2f9f5ce1274938c24a | p@chr7:95979117..95979120, + |
| 2.19e-12 | FFCP PHASE2:Hg19::chr4:26862218..26862221,-#_6b2186e99d4e7c2f9f5ce1274938c24a | p2@ENST00000467484 |
| 2.19e-12 | FFCP PHASE2:Hg19::chr4:114901128..114901136,-#_6b2186e99d4e7c2f9f5ce1274938c24a | p20@ARSJ |
| 2.19e-12 | FFCP PHASE1:Hg19::chr7:95979117..95979120,+#_6b2186e99d4e7c2f9f5ce1274938c24a | p@chr7:95979117..95979120, + |
| 2.19e-12 | FFCP PHASE1:Hg19::chr21:45467027..45467028,-#_6b2186e99d4e7c2f9f5ce1274938c24a | p1@H2AFZP1 |
| 2.19e-12 | FFCP PHASE2:Hg19::chr4:120446538..120446544,-#_6b2186e99d4e7c2f9f5ce1274938c24a | p@chr4:120446538..120446544, - |
| 2.19e-12 | FFCP PHASE1:Hg19::chr4:26862218..26862221,-#_6b2186e99d4e7c2f9f5ce1274938c24a | p2@ENST00000467484 |
| 2.19e-12 | FFCP PHASE1:Hg19::chr4:114901128..114901136,-#_6b2186e99d4e7c2f9f5ce1274938c24a | p20@ARSJ |
| 2.19e-12 | FFCP PHASE2:Hg19::chr3:123522645..123522646,-#_6b2186e99d4e7c2f9f5ce1274938c24a | p@chr3:123522645..123522646, - |
| 2.19e-12 | FFCP PHASE2:Hg19::chr21:45467027..45467028,-#_6b2186e99d4e7c2f9f5ce1274938c24a | p1@H2AFZP1 |
| 2.19e-12 | FFCP PHASE1:Hg19::chr4:120446538..120446544,-#_6b2186e99d4e7c2f9f5ce1274938c24a | p@chr4:120446538..120446544, - |
| 2.19e-12 | FFCP PHASE1:Hg19::chr3:123522645..123522646,-#_6b2186e99d4e7c2f9f5ce1274938c24a | p@chr3:123522645..123522646, - |
| 2.45e-12 | FFCP PHASE2:Hg19::chr22:50942880..50942889,-#_bfd53e1e8420df477f9e6bd2d0edf27b | p@chr22:50942880..50942889, - |
| 2.45e-12 | FFCP PHASE1:Hg19::chr8:67372487..67372498,+#_bfd53e1e8420df477f9e6bd2d0edf27b | p14@C8orf46 |
