UBERON:0005721: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0005721
|name=pronephric mesoderm
|namespace=
|def=
|xref=AAO:0011090;;EFO:0003479;;TAO:0000067;;VHOG:0001239;;XAO:0000264;;ZFA:0000067
|is_a=UBERON:...") |
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|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
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Revision as of 17:23, 15 June 2012
| Name: | pronephric mesoderm | ||
|---|---|---|---|
| Xrefs: |
| ||
| Synonyms: |
"pronephric anlage" RELATED [XAO:0000264] "pronephric bulge" RELATED [XAO:0000264] "pronephric mesenchyme" RELATED [XAO:0000264] "pronephric primordium" RELATED [XAO:0000264] | ||
| Comments: | the intermediate mesoderm of the chick embryo acquires its ability to form kidneys through its interactions with the paraxial mesoderm [ISBN:9780878932504 "Developmental Biology", PMID:10720431 "Signals from trunk paraxial mesoderm induce pronephros formation in chick intermediate mesoderm"]. These interactions induce the expression of TFs including Lim1, Pax2 and Pax6 that cause the intermediate mesoderm to form the kidney |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000926(mesoderm),UBERON:0004120(mesoderm-derived structure) |
|---|---|
| develops_from: | UBERON:0007297(presumptive pronephric mesoderm) |
| part_of: | UBERON:0003064(intermediate mesoderm) |
Children
| develops from: | UBERON:0002120 (pronephros),UBERON:0003060 (pronephric duct) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005721 (pronephric mesoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.83e-65 | FFCP PHASE2:Mm9::chr14:63665679..63665688,+#_5b4f10e1e871e010ff8b4325fc13cddc | p4@Defb42 |
| 2.83e-65 | FFCP PHASE2:Mm9::chr14:63585028..63585037,-#_5b4f10e1e871e010ff8b4325fc13cddc | p@chr14:63585028..63585037, - |
| 2.83e-65 | FFCP PHASE2:Mm9::chr10:127470655..127470664,+#_5b4f10e1e871e010ff8b4325fc13cddc | p@chr10:127470655..127470664, + |
| 2.83e-65 | FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_5b4f10e1e871e010ff8b4325fc13cddc | p4@Spink12 |
| 2.83e-65 | FFCP PHASE1:Mm9::chr10:127470655..127470664,+#_5b4f10e1e871e010ff8b4325fc13cddc | p@chr10:127470655..127470664, + |
| 2.83e-65 | FFCP PHASE1:Mm9::chr14:63585028..63585037,-#_5b4f10e1e871e010ff8b4325fc13cddc | p@chr14:63585028..63585037, - |
| 2.83e-65 | FFCP PHASE1:Mm9::chr14:63665679..63665688,+#_5b4f10e1e871e010ff8b4325fc13cddc | p4@Defb42 |
| 2.83e-65 | FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_5b4f10e1e871e010ff8b4325fc13cddc | p4@Spink12 |
| 3.99e-50 | FFCP PHASE2:Mm9::chr2:152388713..152388729,+#_68c9c90a59166e7c7e8ce48d580d375c | p@chr2:152388713..152388729, + |
| 3.99e-50 | FFCP PHASE1:Mm9::chr2:152388713..152388729,+#_68c9c90a59166e7c7e8ce48d580d375c | p@chr2:152388713..152388729, + |
| 5.6e-50 | FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_1b592bcb80aaa8c83d159ca2476524ae | p@chr2:120409486..120409492, + |
| 5.6e-50 | FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_1b592bcb80aaa8c83d159ca2476524ae | p@chr2:120409486..120409492, + |
| 1.6e-49 | FFCP PHASE2:Mm9::chr11:76361451..76361499,+#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr11:76361451..76361499, + |
| 1.6e-49 | FFCP PHASE1:Mm9::chr14:63585020..63585025,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr14:63585020..63585025, - |
| 1.6e-49 | FFCP PHASE2:Mm9::chr14:63585048..63585062,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr14:63585048..63585062, - |
| 1.6e-49 | FFCP PHASE2:Mm9::chr9:35597686..35597691,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p2@D730048I06Rik, p2@Gm17727 |
| 1.6e-49 | FFCP PHASE1:Mm9::chr11:105797641..105797656,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p4@Cyb561 |
| 1.6e-49 | FFCP PHASE1:Mm9::chr9:35597686..35597691,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p2@D730048I06Rik, p2@Gm17727 |
| 1.6e-49 | FFCP PHASE1:Mm9::chr14:63585048..63585062,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr14:63585048..63585062, - |
| 1.6e-49 | FFCP PHASE1:Mm9::chr11:76361451..76361499,+#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr11:76361451..76361499, + |
| 1.6e-49 | FFCP PHASE2:Mm9::chr11:105797641..105797656,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p4@Cyb561 |
| 1.6e-49 | FFCP PHASE2:Mm9::chr14:63585020..63585025,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr14:63585020..63585025, - |
| 2.33e-49 | FFCP PHASE2:Mm9::chr14:63627556..63627564,-#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr14:63627556..63627564, - |
| 2.33e-49 | FFCP PHASE1:Mm9::chr14:51734043..51734054,+#_5c9c897ce680f33de396c5ef1c1a8ca6 | p2@Eddm3b |
| 2.33e-49 | FFCP PHASE2:Mm9::chr14:51734043..51734054,+#_5c9c897ce680f33de396c5ef1c1a8ca6 | p2@Eddm3b |
| 2.33e-49 | FFCP PHASE2:Mm9::chr9:26611246..26611253,-#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr9:26611246..26611253, - |
| 2.33e-49 | FFCP PHASE2:Mm9::chr9:26732045..26732085,+#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr9:26732045..26732085, + |
| 2.33e-49 | FFCP PHASE1:Mm9::chr9:26611246..26611253,-#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr9:26611246..26611253, - |
| 2.33e-49 | FFCP PHASE1:Mm9::chr14:63627556..63627564,-#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr14:63627556..63627564, - |
| 2.33e-49 | FFCP PHASE1:Mm9::chr9:26732045..26732085,+#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr9:26732045..26732085, + |
| 3.4e-49 | FFCP PHASE2:Mm9::chr2:69981027..69981032,+#_a87d0bddc857d252f012012cedd7c844 | p@chr2:69981027..69981032, + |
| 3.4e-49 | FFCP PHASE1:Mm9::chr2:69981027..69981032,+#_a87d0bddc857d252f012012cedd7c844 | p@chr2:69981027..69981032, + |
| 9.75e-45 | FFCP PHASE2:Hg19::chr14:68644730..68644737,+#_79579161d4c4b30afc39427ef7e168db | p@chr14:68644730..68644737, + |
| 9.75e-45 | FFCP PHASE1:Hg19::chr14:68644730..68644737,+#_79579161d4c4b30afc39427ef7e168db | p@chr14:68644730..68644737, + |
| 9.75e-45 | FFCP PHASE1:Hg19::chr10:102505655..102505689,+#_79579161d4c4b30afc39427ef7e168db | p10@PAX2 |
| 9.75e-45 | FFCP PHASE2:Hg19::chr1:172416185..172416189,-#_79579161d4c4b30afc39427ef7e168db | p@chr1:172416185..172416189, - |
| 9.75e-45 | FFCP PHASE1:Hg19::chr1:172416185..172416189,-#_79579161d4c4b30afc39427ef7e168db | p@chr1:172416185..172416189, - |
| 9.75e-45 | FFCP PHASE2:Hg19::chr10:102505655..102505689,+#_79579161d4c4b30afc39427ef7e168db | p10@PAX2 |
| 4.54e-44 | FFCP PHASE1:Mm9::chrX:75798157..75798162,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chrX:75798157..75798162, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr9:42151966..42151976,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p9@Tecta |
| 4.54e-44 | FFCP PHASE1:Mm9::chrX:130496372..130496393,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chrX:130496372..130496393, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:96150839..96150842,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr11:96150839..96150842, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr5:35930706..35930717,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr5:35930706..35930717, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr14:51680551..51680555,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr14:51680551..51680555, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr13:21379107..21379136,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:21379107..21379136, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr10:56515486..56515496,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr10:56515486..56515496, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr1:36016859..36016897,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr1:36016859..36016897, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:101958855..101958871,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr11:101958855..101958871, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr2:152302813..152302821,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p3@Defb20 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr8:25706249..25706254,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr8:25706249..25706254, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr1:90155923..90155932,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr1:90155923..90155932, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr8:23045782..23045791,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr8:23045782..23045791, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:34107586..34107593,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr11:34107586..34107593, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr13:21379159..21379162,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:21379159..21379162, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr9:70761885..70761895,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr9:70761885..70761895, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr9:26704579..26704582,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr9:26704579..26704582, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr14:103837894..103837900,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr14:103837894..103837900, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr16:28323634..28323657,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr16:28323634..28323657, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr11:105797824..105797838,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p13@Cyb561 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr13:21381777..21381789,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:21381777..21381789, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chrX:12571679..12571688,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chrX:12571679..12571688, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr7:65995799..65995810,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr7:65995799..65995810, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr7:25563187..25563205,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr7:25563187..25563205, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr5:66513886..66513897,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr5:66513886..66513897, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr17:24670830..24670845,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr17:24670830..24670845, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr3:103650730..103650741,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr3:103650730..103650741, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr9:35657485..35657490,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p3@Gm3428 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr2:148676919..148676930,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p3@9230104L09Rik |
| 4.54e-44 | FFCP PHASE1:Mm9::chr15:75304900..75304907,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr15:75304900..75304907, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr9:26727675..26727681,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr9:26727675..26727681, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr5:35930667..35930691,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr5:35930667..35930691, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr12:103896102..103896116,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr12:103896102..103896116, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr1:89596972..89596981,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr1:89596972..89596981, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr8:22061721..22061728,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p2@Gm6040, p2@LOC100503992 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr1:90156002..90156013,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr1:90156002..90156013, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr14:51680551..51680555,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr14:51680551..51680555, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:53955299..53955306,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr11:53955299..53955306, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr9:34813361..34813403,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr9:34813361..34813403, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr13:21379372..21379404,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:21379372..21379404, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr4:123977104..123977120,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p1@ENSMUST00000139012, p1@uc008uqo.1 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr14:51627586..51627595,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p4@Rnase10 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr13:21378296..21378303,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:21378296..21378303, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr8:126604677..126604701,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr8:126604677..126604701, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr9:35585507..35585517,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p4@Gm17727 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr4:123977104..123977120,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p1@ENSMUST00000139012, p1@uc008uqo.1 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr1:39707572..39707583,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr1:39707572..39707583, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr15:54678902..54678911,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr15:54678902..54678911, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr12:103896102..103896116,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr12:103896102..103896116, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chrX:50280181..50280192,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chrX:50280181..50280192, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr5:31379845..31379855,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr5:31379845..31379855, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr1:11079838..11079844,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr1:11079838..11079844, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:167480413..167480463,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr2:167480413..167480463, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr7:109379339..109379349,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p15@Pgap2 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr13:21380610..21380620,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:21380610..21380620, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr8:19141471..19141518,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr8:19141471..19141518, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr13:24270118..24270122,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:24270118..24270122, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr13:21378871..21378901,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:21378871..21378901, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr5:31379972..31379981,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr5:31379972..31379981, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:148676919..148676930,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p3@9230104L09Rik |
| 4.54e-44 | FFCP PHASE1:Mm9::chr11:101959159..101959163,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr11:101959159..101959163, + |
