MCL coexpression mm9:437
From FANTOM5_SSTAR
Phase1 CAGE Peaks
Short description | |
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Mm9::chr10:69227401..69227417,+ | p@chr10:69227401..69227417 + |
Mm9::chr14:55674497..55674515,+ | p@chr14:55674497..55674515 + |
Mm9::chr14:65036618..65036627,- | p@chr14:65036618..65036627 - |
Mm9::chr16:42921903..42921908,+ | p@chr16:42921903..42921908 + |
Mm9::chr16:42921959..42921969,+ | p@chr16:42921959..42921969 + |
Mm9::chr16:42921974..42921981,+ | p@chr16:42921974..42921981 + |
Mm9::chr16:77421892..77421903,+ | p@chr16:77421892..77421903 + |
Mm9::chr16:91868147..91868189,+ | p@chr16:91868147..91868189 + |
Mm9::chr18:69679247..69679264,+ | p@chr18:69679247..69679264 + |
Mm9::chr18:69679337..69679354,+ | p@chr18:69679337..69679354 + |
Mm9::chr1:179393159..179393161,- | p@chr1:179393159..179393161 - |
Mm9::chr2:52182494..52182501,- | p@chr2:52182494..52182501 - |
Mm9::chr2:77655482..77655519,- | p22@Zfp385b |
Mm9::chr2:77655548..77655551,- | p28@Zfp385b |
Mm9::chr4:153471214..153471223,- | p3@Trp73 |
Mm9::chr5:123435005..123435006,- | p33@Kdm2b |
Mm9::chr5:17080335..17080346,+ | p12@Sema3c |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
GO ID | GO name | FDR corrected p-value |
---|---|---|
GO:0009791 | post-embryonic development | 0.00287473216175041 |
GO:0033326 | cerebrospinal fluid secretion | 0.0125631121505351 |
GO:0030215 | semaphorin receptor binding | 0.0125631121505351 |
GO:0051864 | histone demethylase activity (H3-K36 specific) | 0.0125631121505351 |
GO:0043508 | negative regulation of JNK activity | 0.0125631121505351 |
GO:0032452 | histone demethylase activity | 0.0125631121505351 |
GO:0002039 | p53 binding | 0.018840022401468 |
GO:0032451 | demethylase activity | 0.018840022401468 |
GO:0045793 | positive regulation of cell size | 0.018840022401468 |
GO:0021766 | hippocampus development | 0.018840022401468 |
GO:0021761 | limbic system development | 0.0318673956740005 |
GO:0001836 | release of cytochrome c from mitochondria | 0.0318673956740005 |
GO:0007589 | fluid secretion | 0.0318673956740005 |
GO:0048546 | digestive tract morphogenesis | 0.033219782953293 |
GO:0021543 | pallium development | 0.033219782953293 |
GO:0043506 | regulation of JNK activity | 0.033219782953293 |
GO:0001974 | blood vessel remodeling | 0.033219782953293 |
GO:0043407 | negative regulation of MAP kinase activity | 0.033916940711099 |
GO:0008270 | zinc ion binding | 0.033916940711099 |
GO:0008637 | apoptotic mitochondrial changes | 0.035199655579238 |
GO:0009887 | organ morphogenesis | 0.035199655579238 |
GO:0001755 | neural crest cell migration | 0.0360566569316459 |
GO:0043524 | negative regulation of neuron apoptosis | 0.0360566569316459 |
GO:0021537 | telencephalon development | 0.0360566569316459 |
GO:0016706 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 0.0376181525092354 |
GO:0007399 | nervous system development | 0.0407061218599463 |
GO:0014032 | neural crest cell development | 0.0407061218599463 |
GO:0014033 | neural crest cell differentiation | 0.0407061218599463 |
GO:0046914 | transition metal ion binding | 0.0407061218599463 |
GO:0043523 | regulation of neuron apoptosis | 0.0407061218599463 |
GO:0006469 | negative regulation of protein kinase activity | 0.0407061218599463 |
GO:0033673 | negative regulation of kinase activity | 0.0407061218599463 |
GO:0051402 | neuron apoptosis | 0.0407061218599463 |
GO:0051348 | negative regulation of transferase activity | 0.0407061218599463 |
GO:0048762 | mesenchymal cell differentiation | 0.0407061218599463 |
GO:0014031 | mesenchymal cell development | 0.0407061218599463 |
GO:0007050 | cell cycle arrest | 0.0456766426830352 |
GO:0043086 | negative regulation of catalytic activity | 0.0464436380388674 |
GO:0008632 | apoptotic program | 0.0471706680793689 |
Relative expression of the co-expression cluster over median <br>Analyst:
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>
Ontology term | p-value | n |
---|---|---|
neuron of cerebral cortex | 1.08e-12 | 6 |
Ontology term | p-value | n |
---|---|---|
cerebral cortex | 3.28e-10 | 21 |
cerebral hemisphere | 3.28e-10 | 21 |
pallium | 3.28e-10 | 21 |
brain grey matter | 3.01e-09 | 29 |
regional part of telencephalon | 3.01e-09 | 29 |
telencephalon | 3.01e-09 | 29 |
regional part of forebrain | 2.34e-08 | 39 |
forebrain | 2.34e-08 | 39 |
future forebrain | 2.34e-08 | 39 |
anterior neural tube | 4.08e-08 | 40 |
gray matter | 9.93e-08 | 34 |
regional part of brain | 6.97e-07 | 46 |
TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
Motifs | -log10(p-value) |
---|---|
MA0003.1 | 0.000624928 |
MA0004.1 | 0.206012 |
MA0006.1 | 0.0950487 |
MA0007.1 | 0.195085 |
MA0009.1 | 0.576798 |
MA0014.1 | 0.00199206 |
MA0017.1 | 0.110433 |
MA0019.1 | 0.413421 |
MA0024.1 | 0.536784 |
MA0025.1 | 0.795679 |
MA0027.1 | 2.19092 |
MA0028.1 | 0.331378 |
MA0029.1 | 0.51708 |
MA0030.1 | 0.523021 |
MA0031.1 | 0.490954 |
MA0038.1 | 0.319246 |
MA0040.1 | 0.588314 |
MA0041.1 | 0.464691 |
MA0042.1 | 0.442876 |
MA0043.1 | 0.666547 |
MA0046.1 | 0.609938 |
MA0048.1 | 0.0160841 |
MA0050.1 | 0.235075 |
MA0051.1 | 0.871644 |
MA0052.1 | 0.595747 |
MA0055.1 | 0.0306466 |
MA0056.1 | 0 |
MA0057.1 | 0.0640642 |
MA0058.1 | 0.139612 |
MA0059.1 | 0.147666 |
MA0060.1 | 0.442997 |
MA0061.1 | 0.241633 |
MA0063.1 | 0 |
MA0066.1 | 1.51042 |
MA0067.1 | 0.902253 |
MA0068.1 | 0.0674589 |
MA0069.1 | 0.59606 |
MA0070.1 | 0.587119 |
MA0071.1 | 0.234437 |
MA0072.1 | 0.579318 |
MA0073.1 | 4.65699e-06 |
MA0074.1 | 0.281183 |
MA0076.1 | 0.386726 |
MA0077.1 | 2.35617 |
MA0078.1 | 0.933078 |
MA0081.1 | 0.163204 |
MA0083.1 | 0.665805 |
MA0084.1 | 1.22195 |
MA0087.1 | 0.625609 |
MA0088.1 | 0.101322 |
MA0089.1 | 0 |
MA0090.1 | 0.534933 |
MA0091.1 | 0.617309 |
MA0092.1 | 0.535473 |
MA0093.1 | 0.105788 |
MA0095.1 | 0 |
MA0098.1 | 0 |
MA0100.1 | 0.271974 |
MA0101.1 | 0.153616 |
MA0103.1 | 0.116929 |
MA0105.1 | 0.269753 |
MA0106.1 | 0.947606 |
MA0107.1 | 0.113208 |
MA0108.2 | 0.433384 |
MA0109.1 | 0 |
MA0111.1 | 0.559312 |
MA0113.1 | 0.337108 |
MA0114.1 | 0.0673452 |
MA0115.1 | 0.669167 |
MA0116.1 | 0.0949327 |
MA0117.1 | 0.639033 |
MA0119.1 | 0.154009 |
MA0122.1 | 0.657549 |
MA0124.1 | 0.851049 |
MA0125.1 | 0.780232 |
MA0130.1 | 0 |
MA0131.1 | 0.409473 |
MA0132.1 | 0 |
MA0133.1 | 0 |
MA0135.1 | 1.67153 |
MA0136.1 | 0.297196 |
MA0139.1 | 0.0414323 |
MA0140.1 | 0.271883 |
MA0141.1 | 0.129134 |
MA0142.1 | 0.477975 |
MA0143.1 | 0.350815 |
MA0144.1 | 0.520464 |
MA0145.1 | 0.420675 |
MA0146.1 | 0.00335407 |
MA0147.1 | 0.0750034 |
MA0148.1 | 1.16864 |
MA0149.1 | 0.157322 |
MA0062.2 | 0.117092 |
MA0035.2 | 0.275617 |
MA0039.2 | 0.00191438 |
MA0138.2 | 0.402586 |
MA0002.2 | 0.37393 |
MA0137.2 | 0.400341 |
MA0104.2 | 0.0483916 |
MA0047.2 | 1.54044 |
MA0112.2 | 0.420656 |
MA0065.2 | 0.241475 |
MA0150.1 | 0.195003 |
MA0151.1 | 0 |
MA0152.1 | 0.318703 |
MA0153.1 | 0.716409 |
MA0154.1 | 0.366592 |
MA0155.1 | 0.138235 |
MA0156.1 | 0.121496 |
MA0157.1 | 0.4495 |
MA0158.1 | 0 |
MA0159.1 | 0.0802352 |
MA0160.1 | 0.220282 |
MA0161.1 | 0 |
MA0162.1 | 0.000667848 |
MA0163.1 | 0.000516301 |
MA0164.1 | 0.297489 |
MA0080.2 | 0.365149 |
MA0018.2 | 0.305372 |
MA0099.2 | 0.397135 |
MA0079.2 | 3.62376e-05 |
MA0102.2 | 1.27355 |
MA0258.1 | 0.219649 |
MA0259.1 | 0.0696308 |
MA0442.1 | 0 |