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MCL coexpression mm9:160

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:40423484..40423502,+p@chr10:40423484..40423502
+
Mm9::chr10:80267978..80267994,+p1@Amh
Mm9::chr10:80269144..80269155,+p@chr10:80269144..80269155
+
Mm9::chr10:80270378..80270405,-p@chr10:80270378..80270405
-
Mm9::chr11:100939668..100939675,+p5@Hsd17b1
Mm9::chr11:64252028..64252033,+p@chr11:64252028..64252033
+
Mm9::chr11:78218076..78218085,-p@chr11:78218076..78218085
-
Mm9::chr11:78218088..78218109,-p@chr11:78218088..78218109
-
Mm9::chr11:78218124..78218138,-p@chr11:78218124..78218138
-
Mm9::chr12:70419557..70419568,-p@chr12:70419557..70419568
-
Mm9::chr13:22002790..22002800,+p@chr13:22002790..22002800
+
Mm9::chr13:22002808..22002818,+p@chr13:22002808..22002818
+
Mm9::chr13:22002835..22002844,+p@chr13:22002835..22002844
+
Mm9::chr13:22027290..22027293,+p@chr13:22027290..22027293
+
Mm9::chr13:22028056..22028060,+p@chr13:22028056..22028060
+
Mm9::chr13:64190777..64190808,-p7@Hsd17b3
Mm9::chr14:26688270..26688295,+p@chr14:26688270..26688295
+
Mm9::chr14:26688313..26688342,+p@chr14:26688313..26688342
+
Mm9::chr14:63940369..63940380,-p@chr14:63940369..63940380
-
Mm9::chr14:63940381..63940388,-p@chr14:63940381..63940388
-
Mm9::chr14:63940401..63940406,-p@chr14:63940401..63940406
-
Mm9::chr15:51621796..51621814,-p@chr15:51621796..51621814
-
Mm9::chr15:51621825..51621843,-p@chr15:51621825..51621843
-
Mm9::chr15:98728889..98728898,-p2@Dhh
Mm9::chr16:57350661..57350691,-p@chr16:57350661..57350691
-
Mm9::chr17:26343402..26343411,-p@chr17:26343402..26343411
-
Mm9::chr17:26343432..26343443,-p@chr17:26343432..26343443
-
Mm9::chr17:28644419..28644434,-p9@Fkbp5
Mm9::chr17:28644459..28644474,-p7@Fkbp5
Mm9::chr17:89026087..89026115,+p4@Ston1
Mm9::chr19:46747373..46747390,-p1@Cyp17a1
Mm9::chr1:157079806..157079834,-p1@uc007dbe.1
Mm9::chr1:157079840..157079859,-p1@BC034090
Mm9::chr1:34154110..34154139,+p@chr1:34154110..34154139
+
Mm9::chr2:148625363..148625390,+p@chr2:148625363..148625390
+
Mm9::chr2:148625392..148625410,+p@chr2:148625392..148625410
+
Mm9::chr2:148625440..148625453,+p@chr2:148625440..148625453
+
Mm9::chr2:148625478..148625492,+p@chr2:148625478..148625492
+
Mm9::chr2:74976903..74976916,+p@chr2:74976903..74976916
+
Mm9::chr3:138189138..138189142,+p1@Eif4e
Mm9::chr3:87587211..87587233,-p3@Ntrk1
Mm9::chr4:107020023..107020048,+p@chr4:107020023..107020048
+
Mm9::chr4:140652853..140652865,+p@chr4:140652853..140652865
+
Mm9::chr4:140652996..140653007,+p@chr4:140652996..140653007
+
Mm9::chr4:43270640..43270649,+p@chr4:43270640..43270649
+
Mm9::chr4:43270733..43270747,+p@chr4:43270733..43270747
+
Mm9::chr5:65438116..65438120,-p@chr5:65438116..65438120
-
Mm9::chr5:73008621..73008630,-p@chr5:73008621..73008630
-
Mm9::chr5:75547405..75547425,+p@chr5:75547405..75547425
+
Mm9::chr5:75548184..75548211,+p5@Pdgfra
Mm9::chr5:75548299..75548322,+p3@Pdgfra
Mm9::chr5:75548341..75548392,+p1@Pdgfra
Mm9::chr6:48389611..48389623,-p@chr6:48389611..48389623
-
Mm9::chr7:104599810..104599819,+p3@Kctd14
Mm9::chr7:104599826..104599841,+p2@Kctd14
Mm9::chr7:109015811..109015852,-p6@Folr1
Mm9::chr7:124523532..124523544,+p@chr7:124523532..124523544
+
Mm9::chr7:133016191..133016234,+p@chr7:133016191..133016234
+
Mm9::chr7:134830340..134830354,-p@chr7:134830340..134830354
-
Mm9::chr7:151635672..151635690,-p2@Cttn
Mm9::chr7:52312425..52312434,-p@chr7:52312425..52312434
-
Mm9::chr8:73162767..73162778,-p@chr8:73162767..73162778
-
Mm9::chr8:74210633..74210673,+p@chr8:74210633..74210673
+
Mm9::chr8:74210687..74210707,+p@chr8:74210687..74210707
+
Mm9::chr8:80248811..80248822,-p9@Ednra
Mm9::chr8:97334346..97334361,+p1@Ccl17
Mm9::chr9:45136577..45136591,+p@chr9:45136577..45136591
+
Mm9::chr9:86651061..86651063,+p@chr9:86651061..86651063
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0045137development of primary sexual characteristics0.00564388892742367
GO:0006694steroid biosynthetic process0.00564388892742367
GO:0007548sex differentiation0.00564388892742367
GO:0003006reproductive developmental process0.0069094056575987
GO:0016229steroid dehydrogenase activity0.0134672247436423
GO:0046546development of primary male sexual characteristics0.0135048765320258
GO:0046661male sex differentiation0.0146140807144875
GO:0008202steroid metabolic process0.0146140807144875
GO:0042446hormone biosynthetic process0.0222495706780046
GO:0007506gonadal mesoderm development0.0257206979977026
GO:0046655folic acid metabolic process0.0257206979977026
GO:0004508steroid 17-alpha-monooxygenase activity0.0257206979977026
GO:0047045testosterone 17-beta-dehydrogenase (NADP+) activity0.0257206979977026
GO:0022414reproductive process0.0257206979977026
GO:0008406gonad development0.0267817631548365
GO:0048608reproductive structure development0.0271045687618472
GO:0008610lipid biosynthetic process0.0289954205108826
GO:0004714transmembrane receptor protein tyrosine kinase activity0.0289954205108826
GO:0005515protein binding0.0289954205108826
GO:0008429phosphatidylethanolamine binding0.0289954205108826
GO:0006703estrogen biosynthetic process0.0289954205108826
GO:0004962endothelin receptor activity0.0289954205108826
GO:0048407platelet-derived growth factor binding0.0289954205108826
GO:0033327Leydig cell differentiation0.0289954205108826
GO:0019199transmembrane receptor protein kinase activity0.0306867376359688
GO:0042445hormone metabolic process0.0306867376359688
GO:0030809negative regulation of nucleotide biosynthetic process0.0306867376359688
GO:0006620posttranslational protein targeting to membrane0.0306867376359688
GO:0030908protein splicing0.0306867376359688
GO:0030818negative regulation of cAMP biosynthetic process0.0306867376359688
GO:0016539intein-mediated protein splicing0.0306867376359688
GO:0030815negative regulation of cAMP metabolic process0.0306867376359688
GO:0030803negative regulation of cyclic nucleotide biosynthetic process0.0306867376359688
GO:0030800negative regulation of cyclic nucleotide metabolic process0.0306867376359688
GO:0008210estrogen metabolic process0.0375225372766592
GO:0045980negative regulation of nucleotide metabolic process0.0375225372766592
GO:0008517folic acid transporter activity0.0375225372766592
GO:0009058biosynthetic process0.0375225372766592
GO:0030817regulation of cAMP biosynthetic process0.0434324089209833
GO:0006704glucocorticoid biosynthetic process0.0434324089209833
GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor0.0445127194766519
GO:0030539male genitalia development0.047248571028189
GO:0005160transforming growth factor beta receptor binding0.047248571028189
GO:0030814regulation of cAMP metabolic process0.047248571028189
GO:0016614oxidoreductase activity, acting on CH-OH group of donors0.047248571028189



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.12.49477e-09
MA0004.10.263095
MA0006.10.0512761
MA0007.10.112717
MA0009.10.149897
MA0014.10.00535677
MA0017.10.0723449
MA0019.10.0665798
MA0024.10.126874
MA0025.10.299033
MA0027.11.59306
MA0028.10.00590512
MA0029.10.11612
MA0030.10.119321
MA0031.10.102488
MA0038.10.133807
MA0040.12.83502
MA0041.10.661545
MA0042.10.854935
MA0043.10.206742
MA0046.10.507544
MA0048.10.00395684
MA0050.10.850929
MA0051.10.596646
MA0052.10.161323
MA0055.10.030998
MA0056.10
MA0057.10.275308
MA0058.10.0513007
MA0059.10.42044
MA0060.10.0128056
MA0061.10.607544
MA0063.10
MA0066.10.547234
MA0067.10.382513
MA0068.13.67219
MA0069.10.943367
MA0070.10.15608
MA0071.12.48183
MA0072.10.901177
MA0073.114.9205
MA0074.10.462514
MA0076.10.0015666
MA0077.10.139722
MA0078.10.383546
MA0081.10.492595
MA0083.10.594808
MA0084.10.659146
MA0087.11.01872
MA0088.10.210244
MA0089.10
MA0090.10.579546
MA0091.10.751313
MA0092.10.367789
MA0093.10.240778
MA0095.10
MA0098.10
MA0100.10.229158
MA0101.10.666889
MA0103.10.446589
MA0105.10.460735
MA0106.10.176188
MA0107.11.11674
MA0108.20.552839
MA0109.10
MA0111.10.107999
MA0113.10.628677
MA0114.10.104607
MA0115.10.2085
MA0116.10.482915
MA0117.10.188603
MA0119.10.449602
MA0122.10.581692
MA0124.10.341692
MA0125.10.783298
MA0130.10
MA0131.10.064945
MA0132.10
MA0133.10
MA0135.11.88943
MA0136.10.50879
MA0139.10.074862
MA0140.10.710009
MA0141.110.4603
MA0142.10.655046
MA0143.11.97111
MA0144.10.2997
MA0145.10.0323089
MA0146.10.0146031
MA0147.10.128727
MA0148.11.0786
MA0149.10.00371969
MA0062.20.000493024
MA0035.21.90766
MA0039.20.0391946
MA0138.20.484934
MA0002.20.217327
MA0137.20.194222
MA0104.20.100688
MA0047.21.75164
MA0112.23.48036
MA0065.20.00400335
MA0150.10.415319
MA0151.10
MA0152.10.572638
MA0153.11.25644
MA0154.10.107891
MA0155.10.0522177
MA0156.10.305197
MA0157.10.0824096
MA0158.10
MA0159.10.377797
MA0160.15.10615
MA0161.10
MA0162.10.0017483
MA0163.11.1138
MA0164.10.509649
MA0080.20.428202
MA0018.20.0291998
MA0099.20.473167
MA0079.22.47483
MA0102.20.706336
MA0258.12.35958
MA0259.10.193476
MA0442.10
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