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MCL coexpression mm9:1422

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Phase1 CAGE Peaks

 Short description
Mm9::chr1:135811366..135811375,-p@chr1:135811366..135811375
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Mm9::chr1:135811991..135811998,-p@chr1:135811991..135811998
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Mm9::chr1:135817923..135817934,-p3@Prelp
Mm9::chr1:135817938..135817969,-p1@Prelp
Mm9::chr1:135817970..135817986,-p2@Prelp
Mm9::chr8:131209294..131209358,+p5@Itgb1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0042685cardioblast cell fate specification0.00569769352983071
GO:0042684cardioblast cell fate commitment0.00569769352983071
GO:0010002cardioblast differentiation0.0113947627233114
GO:0045214sarcomere organization0.0182211315066188
GO:0031594neuromuscular junction0.0182211315066188
GO:0030239myofibril assembly0.0182211315066188
GO:0055002striated muscle cell development0.0182211315066188
GO:0055001muscle cell development0.0182211315066188
GO:0035051cardiac cell differentiation0.0182211315066188
GO:0031032actomyosin structure organization and biogenesis0.0182211315066188
GO:0048628myoblast maturation0.0182211315066188
GO:0048627myoblast development0.0182211315066188
GO:0005178integrin binding0.0182211315066188
GO:0001708cell fate specification0.0182211315066188
GO:0000082G1/S transition of mitotic cell cycle0.0182211315066188
GO:0042383sarcolemma0.0194242790689466
GO:0051146striated muscle cell differentiation0.0194242790689466
GO:0008305integrin complex0.0215051615186753
GO:0045445myoblast differentiation0.0215705580130174
GO:0051325interphase0.0222237577923401
GO:0051329interphase of mitotic cell cycle0.0222237577923401
GO:0048513organ development0.0242452063641671
GO:0032403protein complex binding0.0242452063641671
GO:0019717synaptosome0.0246555107125972
GO:0005201extracellular matrix structural constituent0.0251050382667859
GO:0042692muscle cell differentiation0.0251050382667859
GO:0007160cell-matrix adhesion0.0251050382667859
GO:0048741skeletal muscle fiber development0.0251050382667859
GO:0048747muscle fiber development0.0251050382667859
GO:0031589cell-substrate adhesion0.0254036841775843
GO:0043235receptor complex0.0255021912101114
GO:0048731system development0.0255021912101114
GO:0048469cell maturation0.0255021912101114
GO:0045596negative regulation of cell differentiation0.0284229123324066
GO:0007229integrin-mediated signaling pathway0.0287339879187794
GO:0021700developmental maturation0.0287339879187794
GO:0007519skeletal muscle development0.0291396984880458
GO:0048856anatomical structure development0.0291396984880458
GO:0045165cell fate commitment0.0291396984880458
GO:0051093negative regulation of developmental process0.0295444077178587
GO:0001701in utero embryonic development0.0329521095651926
GO:0014706striated muscle development0.0329521095651926
GO:0007275multicellular organismal development0.0329521095651926
GO:0045595regulation of cell differentiation0.0388340955699746
GO:0030036actin cytoskeleton organization and biogenesis0.0388340955699746
GO:0030029actin filament-based process0.0400656162891692
GO:0007517muscle development0.0400656162891692
GO:0007507heart development0.0401718168432316
GO:0008284positive regulation of cell proliferation0.0407341498512422
GO:0001501skeletal development0.0408222322428206
GO:0032502developmental process0.0469809866053202
GO:0043009chordate embryonic development0.0469809866053202
GO:0009792embryonic development ending in birth or egg hatching0.0469809866053202
GO:0000278mitotic cell cycle0.0469809866053202



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br><br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.04894
MA0004.10.536396
MA0006.11.68531
MA0007.10.52077
MA0009.10.987341
MA0014.10.883128
MA0017.10.387481
MA0019.10.800946
MA0024.10.942716
MA0025.11.22395
MA0027.12.64231
MA0028.10.370592
MA0029.10.920529
MA0030.10.927235
MA0031.10.890871
MA0038.10.686534
MA0040.11.00009
MA0041.10.457338
MA0042.10.443591
MA0043.11.08567
MA0046.11.02391
MA0048.10.161427
MA0050.10.57678
MA0051.10.695779
MA0052.11.00829
MA0055.14.94171
MA0056.10
MA0057.10.895081
MA0058.10.436487
MA0059.10.449345
MA0060.10.275911
MA0061.10.307097
MA0063.10
MA0066.10.675169
MA0067.11.33603
MA0068.10.153907
MA0069.11.00864
MA0070.10.998765
MA0071.10.575909
MA0072.10.990133
MA0073.13.64966
MA0074.11.54084
MA0076.10.407465
MA0077.10.968053
MA0078.10.729877
MA0081.11.19271
MA0083.11.08487
MA0084.11.66561
MA0087.11.04109
MA0088.11.19273
MA0089.10
MA0090.10.500693
MA0091.10.55008
MA0092.10.501022
MA0093.10.379257
MA0095.10
MA0098.10
MA0100.10.626021
MA0101.11.16089
MA0103.10.398766
MA0105.10.57901
MA0106.10.737893
MA0107.11.0169
MA0108.20.824407
MA0109.10
MA0111.10.515457
MA0113.10.708789
MA0114.10.304661
MA0115.11.08851
MA0116.10.944657
MA0117.11.05576
MA0119.10.459301
MA0122.11.07591
MA0124.11.28237
MA0125.11.20757
MA0130.10
MA0131.10.796279
MA0132.10
MA0133.10
MA0135.11.1226
MA0136.10.658622
MA0139.10.243463
MA0140.10.625902
MA0141.10.419361
MA0142.10.876028
MA0143.10.725672
MA0144.10.307873
MA0145.10.119202
MA0146.10.0392287
MA0147.10.320675
MA0148.10.553294
MA0149.10.464445
MA0062.20.204999
MA0035.20.630778
MA0039.21.76222
MA0138.20.788113
MA0002.20.246463
MA0137.20.416331
MA0104.20.261255
MA0047.20.685741
MA0112.20.119197
MA0065.21.24784
MA0150.10.520653
MA0151.10
MA0152.10.685852
MA0153.11.13945
MA0154.10.159217
MA0155.10.822245
MA0156.10.406559
MA0157.10.843181
MA0158.10
MA0159.10.331229
MA0160.10.556423
MA0161.10
MA0162.10.0465447
MA0163.10.664494
MA0164.10.658997
MA0080.20.393257
MA0018.20.669032
MA0099.20.781628
MA0079.23.41496
MA0102.21.7182
MA0258.10.290587
MA0259.10.309517
MA0442.10
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