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Coexpression cluster:C1495

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Full id: C1495_CD14_Monocytederived_parietal_medial_occipital_spinal_neuroectodermal



Phase1 CAGE Peaks

Hg19::chr2:145147310..145147339,-p20@ZEB2
Hg19::chr2:145147356..145147376,-p24@ZEB2
Hg19::chr2:145156407..145156427,-p@chr2:145156407..145156427
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Hg19::chr2:145156527..145156640,-p@chr2:145156527..145156640
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Hg19::chr2:145157140..145157151,-p@chr2:145157140..145157151
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Hg19::chr2:145187381..145187401,-p@chr2:145187381..145187401
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data


No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
myeloid lineage restricted progenitor cell1.43e-3366
granulocyte monocyte progenitor cell4.26e-3267
monopoietic cell5.56e-3259
monocyte5.56e-3259
monoblast5.56e-3259
promonocyte5.56e-3259
macrophage dendritic cell progenitor7.32e-3161
defensive cell3.42e-3048
phagocyte3.42e-3048
myeloid leukocyte1.46e-2872
myeloid cell5.27e-27108
common myeloid progenitor5.27e-27108
classical monocyte1.75e-2642
CD14-positive, CD16-negative classical monocyte1.75e-2642
stuff accumulating cell1.61e-1687
hematopoietic stem cell1.18e-15168
angioblastic mesenchymal cell1.18e-15168
hematopoietic oligopotent progenitor cell1.59e-15161
hematopoietic multipotent progenitor cell1.59e-15161
hematopoietic lineage restricted progenitor cell4.38e-15120
nongranular leukocyte1.95e-14115
hematopoietic cell5.24e-14177
leukocyte4.93e-13136
mesenchymal cell3.29e-08354
connective tissue cell8.19e-08361
motile cell2.66e-07386
Uber Anatomy
Ontology termp-valuen
bone marrow1.35e-2976
bone element1.13e-2782
hematopoietic system2.20e-2498
blood island2.20e-2498
skeletal element4.06e-2490
skeletal system5.70e-24100
immune system6.65e-2193
hemolymphoid system7.02e-20108
adult organism9.91e-18114
musculoskeletal system1.18e-16167
neural tube5.40e-1456
neural rod5.40e-1456
future spinal cord5.40e-1456
neural keel5.40e-1456
regional part of nervous system1.57e-1253
regional part of brain1.57e-1253
regional part of forebrain2.51e-1241
forebrain2.51e-1241
anterior neural tube2.51e-1241
future forebrain2.51e-1241
brain grey matter6.30e-1234
gray matter6.30e-1234
telencephalon8.30e-1234
regional part of telencephalon6.02e-1132
cerebral hemisphere1.05e-1032
tissue3.35e-10773
central nervous system6.58e-1081
neurectoderm8.11e-1086
nervous system1.00e-0989
regional part of cerebral cortex2.59e-0922
brain4.11e-0968
future brain4.11e-0968
neural plate9.54e-0982
presumptive neural plate9.54e-0982
cerebral cortex2.81e-0825
pallium2.81e-0825
neocortex2.87e-0820
connective tissue3.70e-08371
lateral plate mesoderm1.79e-07203


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.10.00461978
MA0004.10.558729
MA0006.10.391183
MA0007.10.539222
MA0009.11.03681
MA0014.10.0254709
MA0017.10.432438
MA0019.10.7124
MA0024.10.929647
MA0025.11.17262
MA0027.12.65688
MA0028.10.408079
MA0029.10.949428
MA0030.10.937696
MA0031.10.871496
MA0038.10.665566
MA0040.10.955415
MA0041.10.578072
MA0042.10.544748
MA0043.11.03713
MA0046.11.02569
MA0048.10.152639
MA0050.10.545671
MA0051.10.661179
MA0052.10.959373
MA0055.10.0586456
MA0056.10
MA0057.10.882847
MA0058.10.458909
MA0059.10.457555
MA0060.10.267412
MA0061.10.23892
MA0063.10
MA0066.10.66601
MA0067.11.35893
MA0068.10.199491
MA0069.11.02175
MA0070.11.01032
MA0071.10.625297
MA0072.11.00572
MA0073.10.00076337
MA0074.10.660398
MA0076.10.475586
MA0077.10.997832
MA0078.10.763954
MA0081.10.457725
MA0083.11.04447
MA0084.11.5477
MA0087.11.00322
MA0088.10.0971959
MA0089.10
MA0090.10.490736
MA0091.10.561458
MA0092.10.522012
MA0093.11.02138
MA0095.10
MA0098.10
MA0100.10.679972
MA0101.11.02896
MA0103.10.381434
MA0105.10.134725
MA0106.10.70837
MA0107.10.320267
MA0108.20.868347
MA0109.10
MA0111.10.504913
MA0113.10.725375
MA0114.10.314898
MA0115.11.28169
MA0116.10.323925
MA0117.11.07516
MA0119.10.440684
MA0122.11.10154
MA0124.11.23968
MA0125.11.15445
MA0130.10
MA0131.10.782708
MA0132.10
MA0133.10
MA0135.11.06778
MA0136.10.672893
MA0139.10.226048
MA0140.10.622527
MA0141.10.455728
MA0142.10.838805
MA0143.10.725558
MA0144.11.47313
MA0145.10.107156
MA0146.10.0213085
MA0147.10.327615
MA0148.10.584698
MA0149.10.612449
MA0062.20.658749
MA0035.20.621793
MA0039.20.00570825
MA0138.20.765223
MA0002.20.255126
MA0137.20.414885
MA0104.20.26661
MA0047.20.695777
MA0112.20.332548
MA0065.20.109623
MA0150.10.484557
MA0151.10
MA0152.10.629368
MA0153.11.13732
MA0154.10.132326
MA0155.10.0961854
MA0156.10.417278
MA0157.10.810597
MA0158.10
MA0159.10.875329
MA0160.10.600559
MA0161.10
MA0162.10.0383129
MA0163.10.0270301
MA0164.11.74929
MA0080.20.394469
MA0018.20.709805
MA0099.21.52352
MA0079.20.000444266
MA0102.21.58513
MA0258.10.788656
MA0259.10.336472
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data


No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data


This analysis result is provided for C0 - C305 clusters.