Personal tools

UBERON:0001556

From FANTOM5_SSTAR

Revision as of 10:55, 24 February 2012 by Autoedit (talk | contribs) (Created page with "{{UBERON |id=UBERON:0001556 |name=lower urinary tract |namespace= |def="Subdivision of urinary system which consists of the urinary bladder and the urethra." [] |xref=FMA...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Name:lower urinary tract
Definition:"Subdivision of urinary system which consists of the urinary bladder and the urethra." []
Xrefs:
links:

FMA:45659
galen:LowerUrinaryTract
MA:0002636

SCTID:181420004
Comments:TODO - add superclass urinary tract?
Alt_id: UBERON:FMA_45659-MA_0002636
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000061(anatomical structure),UBERON:0006554(urinary system structure)
part_of:UBERON:0001008(renal system)



Children

part of:UBERON:0000057 (urethra),UBERON:0001255 (urinary bladder),CL:1000600 (lower urinary tract cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001556 (lower urinary tract), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.55e-98FFCP PHASE1:Hg19::chr10:5660248..5660254,-#_04efdebd7ddf5a36c16380bc827c0a40p2@ENST00000427341
1.55e-98FFCP PHASE2:Hg19::chr5:148796190..148796191,+#_04efdebd7ddf5a36c16380bc827c0a40p@chr5:148796190..148796191, +
1.55e-98FFCP PHASE2:Hg19::chr9:125155637..125155639,+#_04efdebd7ddf5a36c16380bc827c0a40p@chr9:125155637..125155639, +
1.55e-98FFCP PHASE1:Hg19::chr5:148796190..148796191,+#_04efdebd7ddf5a36c16380bc827c0a40p@chr5:148796190..148796191, +
1.55e-98FFCP PHASE1:Hg19::chr9:125155637..125155639,+#_04efdebd7ddf5a36c16380bc827c0a40p@chr9:125155637..125155639, +
1.55e-98FFCP PHASE2:Hg19::chr17:3808512..3808513,-#_04efdebd7ddf5a36c16380bc827c0a40p@chr17:3808512..3808513, -
1.55e-98FFCP PHASE1:Hg19::chr17:3808512..3808513,-#_04efdebd7ddf5a36c16380bc827c0a40p@chr17:3808512..3808513, -
1.55e-98FFCP PHASE2:Hg19::chr1:184801068..184801075,-#_04efdebd7ddf5a36c16380bc827c0a40p@chr1:184801068..184801075, -
1.55e-98FFCP PHASE2:Hg19::chr15:99673979..99673984,+#_04efdebd7ddf5a36c16380bc827c0a40p27@SYNM
1.55e-98FFCP PHASE1:Hg19::chr15:101282110..101282113,+#_04efdebd7ddf5a36c16380bc827c0a40p@chr15:101282110..101282113, +
1.55e-98FFCP PHASE1:Hg19::chr1:184801068..184801075,-#_04efdebd7ddf5a36c16380bc827c0a40p@chr1:184801068..184801075, -
1.55e-98FFCP PHASE2:Hg19::chr10:5660248..5660254,-#_04efdebd7ddf5a36c16380bc827c0a40p2@ENST00000427341
1.55e-98FFCP PHASE1:Hg19::chr15:99673979..99673984,+#_04efdebd7ddf5a36c16380bc827c0a40p27@SYNM
1.55e-98FFCP PHASE2:Hg19::chr15:101282110..101282113,+#_04efdebd7ddf5a36c16380bc827c0a40p@chr15:101282110..101282113, +
3.07e-86FFCP PHASE1:Mm9::chr9:109794961..109794968,-#_337cba022326c0967d1013fd253cd7e3p@chr9:109794961..109794968, -
3.07e-86FFCP PHASE1:Mm9::chr12:80992302..80992309,+#_337cba022326c0967d1013fd253cd7e3p@chr12:80992302..80992309, +
3.07e-86FFCP PHASE2:Mm9::chr9:109794961..109794968,-#_337cba022326c0967d1013fd253cd7e3p@chr9:109794961..109794968, -
3.07e-86FFCP PHASE1:Mm9::chr14:29722238..29722242,-#_337cba022326c0967d1013fd253cd7e3p@chr14:29722238..29722242, -
3.07e-86FFCP PHASE1:Mm9::chr15:84847637..84847642,+#_337cba022326c0967d1013fd253cd7e3p3@Upk3a
3.07e-86FFCP PHASE2:Mm9::chr19:58073599..58073605,+#_337cba022326c0967d1013fd253cd7e3p@chr19:58073599..58073605, +
3.07e-86FFCP PHASE1:Mm9::chr11:89595040..89595050,-#_337cba022326c0967d1013fd253cd7e3p@chr11:89595040..89595050, -
3.07e-86FFCP PHASE1:Mm9::chr9:74005044..74005065,+#_337cba022326c0967d1013fd253cd7e3p@chr9:74005044..74005065, +
3.07e-86FFCP PHASE2:Mm9::chr18:44429795..44429800,+#_337cba022326c0967d1013fd253cd7e3p3@Npy6r
3.07e-86FFCP PHASE2:Mm9::chr10:61188929..61188936,+#_337cba022326c0967d1013fd253cd7e3p@chr10:61188929..61188936, +
3.07e-86FFCP PHASE2:Mm9::chr9:74005044..74005065,+#_337cba022326c0967d1013fd253cd7e3p@chr9:74005044..74005065, +
3.07e-86FFCP PHASE2:Mm9::chr19:34791339..34791346,-#_337cba022326c0967d1013fd253cd7e3p@chr19:34791339..34791346, -
3.07e-86FFCP PHASE1:Mm9::chr17:24078882..24078896,+#_337cba022326c0967d1013fd253cd7e3p2@Sbp
3.07e-86FFCP PHASE2:Mm9::chr10:77520043..77520048,+#_337cba022326c0967d1013fd253cd7e3p@chr10:77520043..77520048, +
3.07e-86FFCP PHASE2:Mm9::chr14:68331267..68331286,-#_337cba022326c0967d1013fd253cd7e3p@chr14:68331267..68331286, -
3.07e-86FFCP PHASE1:Mm9::chr7:31388578..31388584,-#_337cba022326c0967d1013fd253cd7e3p@chr7:31388578..31388584, -
3.07e-86FFCP PHASE1:Mm9::chr10:61188929..61188936,+#_337cba022326c0967d1013fd253cd7e3p@chr10:61188929..61188936, +
3.07e-86FFCP PHASE2:Mm9::chr7:31388578..31388584,-#_337cba022326c0967d1013fd253cd7e3p@chr7:31388578..31388584, -
3.07e-86FFCP PHASE1:Mm9::chr14:68331267..68331286,-#_337cba022326c0967d1013fd253cd7e3p@chr14:68331267..68331286, -
3.07e-86FFCP PHASE2:Mm9::chr15:84847637..84847642,+#_337cba022326c0967d1013fd253cd7e3p3@Upk3a
3.07e-86FFCP PHASE1:Mm9::chr18:44429795..44429800,+#_337cba022326c0967d1013fd253cd7e3p3@Npy6r
3.07e-86FFCP PHASE2:Mm9::chr15:36485068..36485103,-#_337cba022326c0967d1013fd253cd7e3p@chr15:36485068..36485103, -
3.07e-86FFCP PHASE1:Mm9::chr19:58073599..58073605,+#_337cba022326c0967d1013fd253cd7e3p@chr19:58073599..58073605, +
3.07e-86FFCP PHASE2:Mm9::chr14:29722238..29722242,-#_337cba022326c0967d1013fd253cd7e3p@chr14:29722238..29722242, -
3.07e-86FFCP PHASE1:Mm9::chr19:34791339..34791346,-#_337cba022326c0967d1013fd253cd7e3p@chr19:34791339..34791346, -
3.07e-86FFCP PHASE2:Mm9::chr11:89595040..89595050,-#_337cba022326c0967d1013fd253cd7e3p@chr11:89595040..89595050, -
3.07e-86FFCP PHASE1:Mm9::chr10:77520043..77520048,+#_337cba022326c0967d1013fd253cd7e3p@chr10:77520043..77520048, +
3.07e-86FFCP PHASE1:Mm9::chr15:36485068..36485103,-#_337cba022326c0967d1013fd253cd7e3p@chr15:36485068..36485103, -
3.07e-86FFCP PHASE2:Mm9::chr12:80992302..80992309,+#_337cba022326c0967d1013fd253cd7e3p@chr12:80992302..80992309, +
3.07e-86FFCP PHASE2:Mm9::chr17:24078882..24078896,+#_337cba022326c0967d1013fd253cd7e3p2@Sbp
2.74e-50FFCP PHASE1:Hg19::chr3:13992334..13992338,-#_12c0c4a90b4b20c598d0e653ae84e8d9p@chr3:13992334..13992338, -
2.74e-50FFCP PHASE2:Hg19::chr16:15850261..15850268,-#_12c0c4a90b4b20c598d0e653ae84e8d9p@chr16:15850261..15850268, -
2.74e-50FFCP PHASE2:Hg19::chr4:186567032..186567041,-#_12c0c4a90b4b20c598d0e653ae84e8d9p@chr4:186567032..186567041, -
2.74e-50FFCP PHASE1:Hg19::chr16:15850261..15850268,-#_12c0c4a90b4b20c598d0e653ae84e8d9p@chr16:15850261..15850268, -
2.74e-50FFCP PHASE2:Hg19::chr6:21664489..21664494,+#_12c0c4a90b4b20c598d0e653ae84e8d9p@chr6:21664489..21664494, +
2.74e-50FFCP PHASE1:Hg19::chr4:186567032..186567041,-#_12c0c4a90b4b20c598d0e653ae84e8d9p@chr4:186567032..186567041, -
2.74e-50FFCP PHASE2:Hg19::chr6:21666284..21666297,+#_12c0c4a90b4b20c598d0e653ae84e8d9p26@LINC00340
2.74e-50FFCP PHASE2:Hg19::chr6:21383702..21383704,+#_12c0c4a90b4b20c598d0e653ae84e8d9p@chr6:21383702..21383704, +
2.74e-50FFCP PHASE2:Hg19::chr21:39627877..39627884,+#_12c0c4a90b4b20c598d0e653ae84e8d9p@chr21:39627877..39627884, +
2.74e-50FFCP PHASE1:Hg19::chr6:21664489..21664494,+#_12c0c4a90b4b20c598d0e653ae84e8d9p@chr6:21664489..21664494, +
2.74e-50FFCP PHASE1:Hg19::chr6:21666284..21666297,+#_12c0c4a90b4b20c598d0e653ae84e8d9p26@LINC00340
2.74e-50FFCP PHASE1:Hg19::chr6:21383702..21383704,+#_12c0c4a90b4b20c598d0e653ae84e8d9p@chr6:21383702..21383704, +
2.74e-50FFCP PHASE2:Hg19::chr6:21588091..21588098,-#_12c0c4a90b4b20c598d0e653ae84e8d9p@chr6:21588091..21588098, -
2.74e-50FFCP PHASE1:Hg19::chr21:39627877..39627884,+#_12c0c4a90b4b20c598d0e653ae84e8d9p@chr21:39627877..39627884, +
2.74e-50FFCP PHASE1:Hg19::chr6:21588091..21588098,-#_12c0c4a90b4b20c598d0e653ae84e8d9p@chr6:21588091..21588098, -
2.74e-50FFCP PHASE2:Hg19::chr3:13992334..13992338,-#_12c0c4a90b4b20c598d0e653ae84e8d9p@chr3:13992334..13992338, -
4.52e-50FFCP PHASE2:Hg19::chr1:233430709..233430711,+#_a7422ae199baa236d81cb27ecd9e7d99p@chr1:233430709..233430711, +
4.52e-50FFCP PHASE1:Hg19::chr1:233430709..233430711,+#_a7422ae199baa236d81cb27ecd9e7d99p@chr1:233430709..233430711, +
4.52e-50FFCP PHASE2:Hg19::chr6:21876977..21876981,+#_a7422ae199baa236d81cb27ecd9e7d99p@chr6:21876977..21876981, +
4.52e-50FFCP PHASE1:Hg19::chr6:21876977..21876981,+#_a7422ae199baa236d81cb27ecd9e7d99p@chr6:21876977..21876981, +
2.74e-44FFCP PHASE2:Mm9::chr10:76337225..76337243,-#_ee9d66c544e7ff7a546a7b105283095ep@chr10:76337225..76337243, -
2.74e-44FFCP PHASE1:Mm9::chr2:135755239..135755248,+#_ee9d66c544e7ff7a546a7b105283095ep@chr2:135755239..135755248, +
2.74e-44FFCP PHASE1:Mm9::chr16:44943814..44943823,+#_ee9d66c544e7ff7a546a7b105283095ep4@Cd200r3
2.74e-44FFCP PHASE1:Mm9::chr7:31388822..31388831,-#_ee9d66c544e7ff7a546a7b105283095ep@chr7:31388822..31388831, -
2.74e-44FFCP PHASE1:Mm9::chr16:34922180..34922189,+#_ee9d66c544e7ff7a546a7b105283095ep@chr16:34922180..34922189, +
2.74e-44FFCP PHASE2:Mm9::chr7:31388822..31388831,-#_ee9d66c544e7ff7a546a7b105283095ep@chr7:31388822..31388831, -
2.74e-44FFCP PHASE1:Mm9::chr16:38783715..38783726,-#_ee9d66c544e7ff7a546a7b105283095ep@chr16:38783715..38783726, -
2.74e-44FFCP PHASE1:Mm9::chr15:36485291..36485294,-#_ee9d66c544e7ff7a546a7b105283095ep2@Snx31
2.74e-44FFCP PHASE2:Mm9::chr4:117650200..117650211,+#_ee9d66c544e7ff7a546a7b105283095ep@chr4:117650200..117650211, +
2.74e-44FFCP PHASE1:Mm9::chr7:31390216..31390224,-#_ee9d66c544e7ff7a546a7b105283095ep@chr7:31390216..31390224, -
2.74e-44FFCP PHASE1:Mm9::chr18:44429732..44429737,+#_ee9d66c544e7ff7a546a7b105283095ep2@Npy6r
2.74e-44FFCP PHASE1:Mm9::chr10:76337225..76337243,-#_ee9d66c544e7ff7a546a7b105283095ep@chr10:76337225..76337243, -
2.74e-44FFCP PHASE2:Mm9::chr7:31390216..31390224,-#_ee9d66c544e7ff7a546a7b105283095ep@chr7:31390216..31390224, -
2.74e-44FFCP PHASE1:Mm9::chr5:92827077..92827083,+#_ee9d66c544e7ff7a546a7b105283095ep@chr5:92827077..92827083, +
2.74e-44FFCP PHASE1:Mm9::chr2:35519156..35519171,+#_ee9d66c544e7ff7a546a7b105283095ep@chr2:35519156..35519171, +
2.74e-44FFCP PHASE2:Mm9::chr10:77520022..77520033,+#_ee9d66c544e7ff7a546a7b105283095ep@chr10:77520022..77520033, +
2.74e-44FFCP PHASE2:Mm9::chr4:41154091..41154099,-#_ee9d66c544e7ff7a546a7b105283095ep@chr4:41154091..41154099, -
2.74e-44FFCP PHASE2:Mm9::chr2:35519156..35519171,+#_ee9d66c544e7ff7a546a7b105283095ep@chr2:35519156..35519171, +
2.74e-44FFCP PHASE2:Mm9::chr16:34922180..34922189,+#_ee9d66c544e7ff7a546a7b105283095ep@chr16:34922180..34922189, +
2.74e-44FFCP PHASE1:Mm9::chr7:31388537..31388547,-#_ee9d66c544e7ff7a546a7b105283095ep@chr7:31388537..31388547, -
2.74e-44FFCP PHASE2:Mm9::chr7:31388537..31388547,-#_ee9d66c544e7ff7a546a7b105283095ep@chr7:31388537..31388547, -
2.74e-44FFCP PHASE1:Mm9::chr4:53416435..53416446,-#_ee9d66c544e7ff7a546a7b105283095ep1@ENSMUST00000154377
2.74e-44FFCP PHASE2:Mm9::chr5:92827077..92827083,+#_ee9d66c544e7ff7a546a7b105283095ep@chr5:92827077..92827083, +
2.74e-44FFCP PHASE1:Mm9::chr4:117650200..117650211,+#_ee9d66c544e7ff7a546a7b105283095ep@chr4:117650200..117650211, +
2.74e-44FFCP PHASE1:Mm9::chr7:31391935..31391967,+#_ee9d66c544e7ff7a546a7b105283095ep@chr7:31391935..31391967, +
2.74e-44FFCP PHASE2:Mm9::chr7:31391935..31391967,+#_ee9d66c544e7ff7a546a7b105283095ep@chr7:31391935..31391967, +
2.74e-44FFCP PHASE1:Mm9::chr4:41154091..41154099,-#_ee9d66c544e7ff7a546a7b105283095ep@chr4:41154091..41154099, -
2.74e-44FFCP PHASE2:Mm9::chr9:48260437..48260446,+#_ee9d66c544e7ff7a546a7b105283095ep@chr9:48260437..48260446, +
2.74e-44FFCP PHASE2:Mm9::chr19:34791405..34791413,-#_ee9d66c544e7ff7a546a7b105283095ep@chr19:34791405..34791413, -
2.74e-44FFCP PHASE2:Mm9::chr5:87332887..87332894,+#_ee9d66c544e7ff7a546a7b105283095ep@chr5:87332887..87332894, +
2.74e-44FFCP PHASE1:Mm9::chr5:87332887..87332894,+#_ee9d66c544e7ff7a546a7b105283095ep@chr5:87332887..87332894, +
2.74e-44FFCP PHASE1:Mm9::chr10:77520022..77520033,+#_ee9d66c544e7ff7a546a7b105283095ep@chr10:77520022..77520033, +
2.74e-44FFCP PHASE2:Mm9::chr2:135755239..135755248,+#_ee9d66c544e7ff7a546a7b105283095ep@chr2:135755239..135755248, +
2.74e-44FFCP PHASE1:Mm9::chr7:31388597..31388604,-#_ee9d66c544e7ff7a546a7b105283095ep@chr7:31388597..31388604, -
2.74e-44FFCP PHASE2:Mm9::chr7:31388597..31388604,-#_ee9d66c544e7ff7a546a7b105283095ep@chr7:31388597..31388604, -
2.74e-44FFCP PHASE2:Mm9::chr18:44429732..44429737,+#_ee9d66c544e7ff7a546a7b105283095ep2@Npy6r

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0001556&oldid=414673"