FF:463-22H4
From FANTOM5_SSTAR
Name: | intestine, embryo E16, biol_rep1 |
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Species: | Mouse (Mus musculus) |
Library ID: | {{{library_id}}} |
Sample type: | {{{sample_category}}} |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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Download raw sequence, BAM & CTSS | ||||||||||||
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Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs10585
0 | 0 |
1 | 0 |
10 | 0 |
100 | 0 |
1000 | 0.107 |
1001 | 0.0627 |
1002 | 0.321 |
1003 | -0.038 |
1004 | 0 |
1005 | 0.038 |
1006 | -0.0706 |
1007 | 0.0044 |
1008 | 0 |
1009 | 0.0155 |
101 | 0.059 |
1010 | 0.205 |
1011 | -0.0923 |
1012 | 0 |
1013 | 0.0177 |
1014 | 0.218 |
1015 | 0.0279 |
1016 | 0.0522 |
1017 | 0 |
1018 | 0.205 |
1019 | 0 |
102 | 0 |
1020 | 0 |
1021 | 0 |
1022 | -0.0704 |
1023 | 0 |
1024 | -0.0101 |
1025 | 0.776 |
1026 | 0 |
1027 | 0.0318 |
1028 | 0 |
1029 | 0.27 |
103 | 0.116 |
1030 | 0 |
1031 | 0.278 |
1032 | 0.134 |
1033 | 0 |
1034 | 0 |
1035 | 0.0282 |
1036 | -0.00386 |
1037 | 0 |
1038 | 0.0146 |
1039 | -0.0982 |
104 | 0 |
1040 | 0 |
1041 | 0 |
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
no result for this sample
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10585
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10585
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.828 |
10 | 10 | 0.825 |
100 | 100 | 0.462 |
101 | 101 | 0.693 |
102 | 102 | 0.25 |
103 | 103 | 0.747 |
104 | 104 | 0.959 |
105 | 105 | 0.379 |
106 | 106 | 0.0538 |
107 | 107 | 0.0274 |
108 | 108 | 0.94 |
109 | 109 | 0.864 |
11 | 11 | 0.956 |
110 | 110 | 0.558 |
111 | 111 | 0.906 |
112 | 112 | 0.388 |
113 | 113 | 0.217 |
114 | 114 | 0.283 |
115 | 115 | 0.597 |
116 | 116 | 0.964 |
117 | 117 | 0.416 |
118 | 118 | 0.587 |
119 | 119 | 0.524 |
12 | 12 | 0.507 |
120 | 120 | 0.726 |
121 | 121 | 0.925 |
122 | 122 | 0.824 |
123 | 123 | 0.215 |
124 | 124 | 0.512 |
125 | 125 | 0.621 |
126 | 126 | 0.0393 |
127 | 127 | 0.795 |
128 | 128 | 0.738 |
129 | 129 | 0.886 |
13 | 13 | 1.74716e-4 |
130 | 130 | 0.257 |
131 | 131 | 0.914 |
132 | 132 | 0.429 |
133 | 133 | 0.119 |
134 | 134 | 0.39 |
135 | 135 | 0.419 |
136 | 136 | 0.407 |
137 | 137 | 0.45 |
138 | 138 | 0.0199 |
139 | 139 | 0.98 |
14 | 14 | 0.559 |
140 | 140 | 0.0371 |
141 | 141 | 0.418 |
142 | 142 | 0.48 |
143 | 143 | 0.0489 |
144 | 144 | 0.29 |
145 | 145 | 0.272 |
146 | 146 | 0.0274 |
147 | 147 | 0.302 |
148 | 148 | 0.857 |
149 | 149 | 0.363 |
15 | 15 | 0.744 |
150 | 150 | 0.358 |
151 | 151 | 0.703 |
152 | 152 | 0.0763 |
153 | 153 | 0.097 |
154 | 154 | 0.365 |
155 | 155 | 0.991 |
156 | 156 | 0.319 |
157 | 157 | 0.625 |
158 | 158 | 0.374 |
159 | 159 | 0.0311 |
160 | 160 | 0.0186 |
161 | 161 | 0.551 |
162 | 162 | 0.967 |
163 | 163 | 0.462 |
164 | 164 | 0.692 |
165 | 165 | 0.698 |
166 | 166 | 0.49 |
167 | 167 | 0.642 |
168 | 168 | 0.189 |
169 | 169 | 0.271 |
17 | 17 | 0.586 |
18 | 18 | 0.0429 |
19 | 19 | 0.0509 |
2 | 2 | 0.287 |
20 | 20 | 0.423 |
21 | 21 | 0.955 |
22 | 22 | 0.267 |
23 | 23 | 0.684 |
24 | 24 | 0.351 |
25 | 25 | 0.522 |
26 | 26 | 0.0885 |
27 | 27 | 0.632 |
28 | 28 | 0.222 |
29 | 29 | 0.966 |
3 | 3 | 0.801 |
30 | 30 | 0.19 |
31 | 31 | 0.636 |
32 | 32 | 0.77 |
33 | 33 | 0.0921 |
34 | 34 | 0.355 |
35 | 35 | 0.499 |
36 | 36 | 0.836 |
37 | 37 | 0.381 |
38 | 38 | 0.999 |
39 | 39 | 0.314 |
4 | 4 | 0.369 |
40 | 40 | 0.154 |
41 | 41 | 0.181 |
42 | 42 | 0.696 |
43 | 43 | 0.903 |
44 | 44 | 0.501 |
45 | 45 | 0.0798 |
46 | 46 | 0.785 |
47 | 47 | 0.983 |
48 | 48 | 0.94 |
49 | 49 | 0.226 |
5 | 5 | 0.555 |
50 | 50 | 0.391 |
51 | 51 | 0.752 |
52 | 52 | 0.0268 |
53 | 53 | 0.623 |
54 | 54 | 0.941 |
55 | 55 | 0.128 |
56 | 56 | 0.905 |
57 | 57 | 0.0926 |
58 | 58 | 0.956 |
59 | 59 | 0.673 |
6 | 6 | 0.869 |
60 | 60 | 0.145 |
61 | 61 | 0.265 |
62 | 62 | 0.118 |
63 | 63 | 0.889 |
64 | 64 | 0.949 |
65 | 65 | 0.908 |
66 | 66 | 0.79 |
67 | 67 | 0.0649 |
68 | 68 | 0.469 |
69 | 69 | 0.337 |
7 | 7 | 0.151 |
70 | 70 | 0.284 |
71 | 71 | 0.433 |
72 | 72 | 0.767 |
73 | 73 | 0.814 |
74 | 74 | 0.895 |
75 | 75 | 0.973 |
76 | 76 | 0.168 |
77 | 77 | 0.0373 |
78 | 78 | 0.401 |
79 | 79 | 0.287 |
8 | 8 | 0.466 |
80 | 80 | 0.148 |
81 | 81 | 0.367 |
82 | 82 | 0.787 |
83 | 83 | 0.391 |
84 | 84 | 0.399 |
85 | 85 | 0.919 |
86 | 86 | 0.484 |
87 | 87 | 0.858 |
88 | 88 | 0.579 |
89 | 89 | 0.664 |
9 | 9 | 0.792 |
90 | 90 | 0.431 |
91 | 91 | 0.148 |
92 | 92 | 0.977 |
93 | 93 | 0.386 |
94 | 94 | 0.0331 |
95 | 95 | 0.924 |
96 | 96 | 0.113 |
97 | 97 | 0.288 |
98 | 98 | 0.643 |
99 | 99 | 0.0661 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10585
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
{{{is_a}}}
part_of relathionship
{{{part_of}}}
has_quality relathionship
{{{has_quality}}}
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000061 (anatomical structure)
0000160 (intestine)
0000465 (material anatomical entity)
0000467 (anatomical system)
0000468 (multi-cellular organism)
0000479 (tissue)
0000480 (anatomical group)
0000481 (multi-tissue structure)
0000922 (embryo)
0000923 (germ layer)
0000925 (endoderm)
0001007 (digestive system)
0001062 (anatomical entity)
0001555 (digestive tract)
0002050 (embryonic structure)
0002532 (epiblast (generic))
0004119 (endoderm-derived structure)
0004185 (endodermal part of digestive tract)
0004921 (subdivision of digestive tract)
0005409 (gastrointestinal system)
0005423 (developing anatomical structure)
0007026 (primitive gut)
FF: FANTOM5
NA
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA