Personal tools

UBERON:0003902

From FANTOM5_SSTAR

Revision as of 17:42, 12 September 2014 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Name:retinal neural layer
Namespace:FANTOM
Definition:"The layer of nerve cells in the retina[XAO]. The part of the retina that contains neurons and photoreceptor cells[GO]." [GO:0003407, XAO:0003216]
Xrefs:
links:

AAO:0011095
BTO:0000929
EHDAA2:0001253
EHDAA:4763
EMAPA:17171
EMAPA:18590
FMA:58628
MA:0000277
ncithesaurus:Neural_Retina
TAO:0000046
VHOG:0000535
XAO:0003216

ZFA:0000046
Synonyms: "neural layer of retina" EXACT [FMA:58628]
"neural retina" EXACT [XAO:0003216, ZFA:0000046]
"neural retinal epithelium" RELATED [MA:000027]
"neuroretina" EXACT [ZFA:0000046]
"stratum nervosum (retina)" EXACT [FMA:58628]
Comments:editor note - we follow ontologies such as FMA and ZFA in first dividing into pigmented and neural layers; the neural layers are further divided into 9 layers. Note that in MA this class is a leaf node.
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001781(layer of retina)
develops_from:UBERON:0005425(presumptive neural retina)



Children

develops from:UBERON:0000941 (cranial nerve II)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003902 (retinal neural layer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr12:57628762..57628773,-#_6092a75c3cc5832f2304dfb768edd4fbp@chr12:57628762..57628773, -
5.42e-195FFCP PHASE2:Hg19::chr12:57628762..57628773,-#_6092a75c3cc5832f2304dfb768edd4fbp@chr12:57628762..57628773, -
9.37e-99FFCP PHASE1:Hg19::chr7:15056365..15056368,-#_c497e6b096e6f3ed0d221e00db461687p@chr7:15056365..15056368, -
9.37e-99FFCP PHASE2:Hg19::chr5:151258901..151258902,+#_c497e6b096e6f3ed0d221e00db461687p@chr5:151258901..151258902, +
9.37e-99FFCP PHASE2:Hg19::chr18:74702556..74702558,-#_c497e6b096e6f3ed0d221e00db461687p@chr18:74702556..74702558, -
9.37e-99FFCP PHASE2:Hg19::chr1:62928606..62928608,+#_c497e6b096e6f3ed0d221e00db461687p@chr1:62928606..62928608, +
9.37e-99FFCP PHASE1:Hg19::chr1:62928606..62928608,+#_c497e6b096e6f3ed0d221e00db461687p@chr1:62928606..62928608, +
9.37e-99FFCP PHASE2:Hg19::chr5:149250331..149250335,-#_c497e6b096e6f3ed0d221e00db461687p@chr5:149250331..149250335, -
9.37e-99FFCP PHASE2:Hg19::chr2:188432107..188432111,+#_c497e6b096e6f3ed0d221e00db461687p@chr2:188432107..188432111, +
9.37e-99FFCP PHASE2:Hg19::chr7:15056365..15056368,-#_c497e6b096e6f3ed0d221e00db461687p@chr7:15056365..15056368, -
9.37e-99FFCP PHASE1:Hg19::chr4:127394496..127394500,-#_c497e6b096e6f3ed0d221e00db461687p@chr4:127394496..127394500, -
9.37e-99FFCP PHASE2:Hg19::chr14:105807545..105807554,+#_c497e6b096e6f3ed0d221e00db461687p@chr14:105807545..105807554, +
9.37e-99FFCP PHASE1:Hg19::chr2:188432107..188432111,+#_c497e6b096e6f3ed0d221e00db461687p@chr2:188432107..188432111, +
9.37e-99FFCP PHASE1:Hg19::chr18:74702556..74702558,-#_c497e6b096e6f3ed0d221e00db461687p@chr18:74702556..74702558, -
9.37e-99FFCP PHASE2:Hg19::chr2:60133192..60133194,-#_c497e6b096e6f3ed0d221e00db461687p@chr2:60133192..60133194, -
9.37e-99FFCP PHASE1:Hg19::chr5:151258901..151258902,+#_c497e6b096e6f3ed0d221e00db461687p@chr5:151258901..151258902, +
9.37e-99FFCP PHASE2:Hg19::chr18:25161980..25161984,-#_c497e6b096e6f3ed0d221e00db461687p@chr18:25161980..25161984, -
9.37e-99FFCP PHASE1:Hg19::chr5:149250331..149250335,-#_c497e6b096e6f3ed0d221e00db461687p@chr5:149250331..149250335, -
9.37e-99FFCP PHASE1:Hg19::chr14:105807545..105807554,+#_c497e6b096e6f3ed0d221e00db461687p@chr14:105807545..105807554, +
9.37e-99FFCP PHASE1:Hg19::chr18:25161980..25161984,-#_c497e6b096e6f3ed0d221e00db461687p@chr18:25161980..25161984, -
9.37e-99FFCP PHASE1:Hg19::chr2:60133192..60133194,-#_c497e6b096e6f3ed0d221e00db461687p@chr2:60133192..60133194, -
9.37e-99FFCP PHASE2:Hg19::chr4:127394496..127394500,-#_c497e6b096e6f3ed0d221e00db461687p@chr4:127394496..127394500, -
2.55e-98FFCP PHASE2:Hg19::chr11:2435409..2435443,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr11:2435409..2435443, -
2.55e-98FFCP PHASE1:Hg19::chr10:62149979..62149980,-#_82099c57e0a429e7776f0c5a4c5e0b92p59@ANK3
2.55e-98FFCP PHASE2:Hg19::chr15:69850503..69850506,+#_82099c57e0a429e7776f0c5a4c5e0b92p3@ENST00000558781
2.55e-98FFCP PHASE1:Hg19::chr13:64423563..64423566,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr13:64423563..64423566, +
2.55e-98FFCP PHASE2:Hg19::chr4:139590958..139590961,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr4:139590958..139590961, -
2.55e-98FFCP PHASE2:Hg19::chr8:133945378..133945386,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr8:133945378..133945386, +
2.55e-98FFCP PHASE1:Hg19::chr19:20382476..20382481,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr19:20382476..20382481, -
2.55e-98FFCP PHASE1:Hg19::chr5:54763740..54763746,-#_82099c57e0a429e7776f0c5a4c5e0b92p10@PPAP2A
2.55e-98FFCP PHASE2:Hg19::chr15:36402459..36402465,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr15:36402459..36402465, -
2.55e-98FFCP PHASE2:Hg19::chr2:30144229..30144240,-#_82099c57e0a429e7776f0c5a4c5e0b92p10@ALK
2.55e-98FFCP PHASE1:Hg19::chr17:12935401..12935405,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr17:12935401..12935405, -
2.55e-98FFCP PHASE2:Hg19::chr11:79291300..79291301,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr11:79291300..79291301, +
2.55e-98FFCP PHASE2:Hg19::chr9:74167667..74167687,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr9:74167667..74167687, -
2.55e-98FFCP PHASE2:Hg19::chr8:90420477..90420478,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr8:90420477..90420478, -
2.55e-98FFCP PHASE2:Hg19::chr9:19514976..19514978,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr9:19514976..19514978, -
2.55e-98FFCP PHASE1:Hg19::chr14:68527802..68527806,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr14:68527802..68527806, +
2.55e-98FFCP PHASE2:Hg19::chr1:1413227..1413230,+#_82099c57e0a429e7776f0c5a4c5e0b92p2@ATAD3B
2.55e-98FFCP PHASE2:Hg19::chr2:134472430..134472432,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr2:134472430..134472432, +
2.55e-98FFCP PHASE2:Hg19::chr6:121951983..121951986,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr6:121951983..121951986, +
2.55e-98FFCP PHASE1:Hg19::chr11:30166055..30166059,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr11:30166055..30166059, -
2.55e-98FFCP PHASE1:Hg19::chr14:88034381..88034386,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr14:88034381..88034386, -
2.55e-98FFCP PHASE2:Hg19::chr8:22000519..22000525,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr8:22000519..22000525, -
2.55e-98FFCP PHASE2:Hg19::chr1:218214846..218214850,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr1:218214846..218214850, -
2.55e-98FFCP PHASE2:Hg19::chr2:133035182..133035195,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr2:133035182..133035195, -
2.55e-98FFCP PHASE2:Hg19::chr14:76447439..76447452,-#_82099c57e0a429e7776f0c5a4c5e0b92p18@TGFB3
2.55e-98FFCP PHASE2:Hg19::chr22:30951607..30951613,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr22:30951607..30951613, -
2.55e-98FFCP PHASE2:Hg19::chr11:20791058..20791067,+#_82099c57e0a429e7776f0c5a4c5e0b92p10@NELL1
2.55e-98FFCP PHASE2:Hg19::chr7:95704857..95704906,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr7:95704857..95704906, +
2.55e-98FFCP PHASE1:Hg19::chr21:22483836..22483880,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr21:22483836..22483880, +
2.55e-98FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr5:172318159..172318160, +
2.55e-98FFCP PHASE1:Hg19::chr5:33229308..33229311,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr5:33229308..33229311, -
2.55e-98FFCP PHASE2:Hg19::chr5:111570472..111570478,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr5:111570472..111570478, -
2.55e-98FFCP PHASE1:Hg19::chr10:22768515..22768517,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr10:22768515..22768517, +
2.55e-98FFCP PHASE1:Hg19::chr15:69850503..69850506,+#_82099c57e0a429e7776f0c5a4c5e0b92p3@ENST00000558781
2.55e-98FFCP PHASE2:Hg19::chr12:72875355..72875358,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr12:72875355..72875358, +
2.55e-98FFCP PHASE2:Hg19::chr2:29484252..29484254,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr2:29484252..29484254, -
2.55e-98FFCP PHASE1:Hg19::chr1:154942133..154942148,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr1:154942133..154942148, -
2.55e-98FFCP PHASE2:Hg19::chr16:70563415..70563420,+#_82099c57e0a429e7776f0c5a4c5e0b92p4@SNORD111B
2.55e-98FFCP PHASE2:Hg19::chr6:168558338..168558388,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr6:168558338..168558388, -
2.55e-98FFCP PHASE2:Hg19::chr5:1414652..1414695,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr5:1414652..1414695, +
2.55e-98FFCP PHASE2:Hg19::chr3:181328472..181328478,+#_82099c57e0a429e7776f0c5a4c5e0b92p25@SOX2-OT
2.55e-98FFCP PHASE2:Hg19::chr8:126163123..126163134,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr8:126163123..126163134, +
2.55e-98FFCP PHASE2:Hg19::chr4:188536760..188536764,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr4:188536760..188536764, -
2.55e-98FFCP PHASE1:Hg19::chr12:296753..296755,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr12:296753..296755, -
2.55e-98FFCP PHASE1:Hg19::chr7:73444812..73444816,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr7:73444812..73444816, +
2.55e-98FFCP PHASE1:Hg19::chr3:27750995..27750997,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr3:27750995..27750997, -
2.55e-98FFCP PHASE2:Hg19::chr14:106176908..106176916,-#_82099c57e0a429e7776f0c5a4c5e0b92p3@BC098451
2.55e-98FFCP PHASE2:Hg19::chr19:48479835..48479841,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr19:48479835..48479841, -
2.55e-98FFCP PHASE2:Hg19::chr7:103086717..103086724,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr7:103086717..103086724, +
2.55e-98FFCP PHASE1:Hg19::chr14:85119696..85119699,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr14:85119696..85119699, +
2.55e-98FFCP PHASE2:Hg19::chr7:77789390..77789399,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr7:77789390..77789399, -
2.55e-98FFCP PHASE2:Hg19::chr19:35978717..35978722,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr19:35978717..35978722, -
2.55e-98FFCP PHASE2:Hg19::chr7:152790347..152790351,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr7:152790347..152790351, +
2.55e-98FFCP PHASE1:Hg19::chr16:51174920..51174928,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr16:51174920..51174928, -
2.55e-98FFCP PHASE2:Hg19::chr16:55740953..55740956,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr16:55740953..55740956, +
2.55e-98FFCP PHASE2:Hg19::chr1:7709325..7709329,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr1:7709325..7709329, +
2.55e-98FFCP PHASE2:Hg19::chr16:19586229..19586233,+#_82099c57e0a429e7776f0c5a4c5e0b92p12@C16orf62
2.55e-98FFCP PHASE1:Hg19::chr12:72875355..72875358,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr12:72875355..72875358, +
2.55e-98FFCP PHASE2:Hg19::chr10:22768515..22768517,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr10:22768515..22768517, +
2.55e-98FFCP PHASE2:Hg19::chr5:109466651..109466653,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr5:109466651..109466653, +
2.55e-98FFCP PHASE1:Hg19::chr2:30144229..30144240,-#_82099c57e0a429e7776f0c5a4c5e0b92p10@ALK
2.55e-98FFCP PHASE2:Hg19::chr18:45498690..45498695,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr18:45498690..45498695, -
2.55e-98FFCP PHASE2:Hg19::chr14:78718132..78718157,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr14:78718132..78718157, +
2.55e-98FFCP PHASE1:Hg19::chrX:25873187..25873209,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chrX:25873187..25873209, +
2.55e-98FFCP PHASE1:Hg19::chr1:1413227..1413230,+#_82099c57e0a429e7776f0c5a4c5e0b92p2@ATAD3B
2.55e-98FFCP PHASE1:Hg19::chr2:134472430..134472432,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr2:134472430..134472432, +
2.55e-98FFCP PHASE1:Hg19::chr8:130597061..130597068,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr8:130597061..130597068, +
2.55e-98FFCP PHASE2:Hg19::chr5:103200303..103200307,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr5:103200303..103200307, +
2.55e-98FFCP PHASE1:Hg19::chr14:68589926..68589929,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr14:68589926..68589929, +
2.55e-98FFCP PHASE1:Hg19::chr5:126962527..126962529,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr5:126962527..126962529, -
2.55e-98FFCP PHASE1:Hg19::chr1:218214846..218214850,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr1:218214846..218214850, -
2.55e-98FFCP PHASE1:Hg19::chr6:16317123..16317126,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr6:16317123..16317126, +
2.55e-98FFCP PHASE1:Hg19::chr2:133035182..133035195,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr2:133035182..133035195, -
2.55e-98FFCP PHASE2:Hg19::chrX:25873187..25873209,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chrX:25873187..25873209, +
2.55e-98FFCP PHASE2:Hg19::chr16:89970522..89970530,+#_82099c57e0a429e7776f0c5a4c5e0b92p9@TCF25
2.55e-98FFCP PHASE1:Hg19::chr22:30951607..30951613,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr22:30951607..30951613, -
2.55e-98FFCP PHASE2:Hg19::chr1:44991346..44991355,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr1:44991346..44991355, +
2.55e-98FFCP PHASE2:Hg19::chr12:59444098..59444102,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr12:59444098..59444102, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0003902&oldid=3277595"