Personal tools

NonredundantMotifs:201

From FANTOM5_SSTAR

Revision as of 10:22, 30 May 2013 by Autoedit (talk | contribs) (Autoedit moved page NonredundantMotifs:Motif201 to NonredundantMotifs:201 without leaving a redirect: NSchange)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant201
  • db :SWISSREGULON
  • Id :ALX1.p2
  • name :ALX1
  • score :0.04904433568073474
  • External refs:
EntrezGene:ALX1
UniProt:ALX1

  • Internal refs:
EntrezGene:ALX1


Motif matrix
POACGT
179.33480230.18707511.67102339.11148
275.75895139.80469533.9576110.783124
349.26410646.80961810.77678153.453875
41.6243450.7491180157.930917
5136.3733944.45255.36993714.108549
6158.727167001.577213
71.5083667.6789330.690944150.426137
80.69553411.38170513.351513134.875628
988.00498521.99811616.72094633.580333
1047.75826139.50631924.61303848.426762
1131.13620260.8681097.84026960.4598
12145.3953510.96293210.8068923.139205
130.69226810.0593741.564066147.988672
149.511747.8901050142.902535
15118.0528983.53107827.49273811.227666
1614.30497927.68241231.51337286.803617
1717.67233266.13687411.20633665.288838
1858.63963421.0579818.92882161.677945

Sub Motif Members