Personal tools

NonredundantMotifs:45

From FANTOM5_SSTAR

Revision as of 16:46, 29 May 2013 by Autoedit (talk | contribs)
Jump to: navigation, search

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant45
  • db :SWISSREGULON
  • Id :MAFB.p2
  • name :MAFB
  • score :0.3684149589669981
  • External refs:
EntrezGene:MAFB
UniProt:MAFB

  • Internal refs:
EntrezGene:MAFB


Motif matrix
POACGT
100430.1438470
22.064792426.3286801.750375
3072.8108210.185366347.147661
45.3148980.713007423.4111310.704811
5396.95622731.4716901.71593
635.561664307.81293112.20358974.565663
761.5370363.110382293.07065472.425775
811.121476199.278785169.96565649.77793

Sub Motif Members