Personal tools

NonredundantMotifs:38

From FANTOM5_SSTAR

Revision as of 16:46, 29 May 2013 by Autoedit (talk | contribs)
Jump to: navigation, search

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant38
  • db :JASPAR
  • Id :MA0112.2
  • name :ESR1
  • score :0.6553463632180748
  • External refs:
EntrezGene:2099
UniProt:2099

  • Internal refs:
EntrezGene:2099


Motif matrix
P0ACGT
112212015471
210780164117
36417314982
4832296593
51342324757
6308288948
736838743
8191842018
9334191310
1043945324
11398132737
125825010760
13632765383
14642589756
1532198416
1621224266
173051063133
18104361217
1959353261
202616522262

Sub Motif Members