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NonredundantMotifs:20

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Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :known20
  • db :UNIPROBE
  • Id :Gmeb1_primary
  • name :SCI09
  • score :0.6275573267230993
  • External refs:
EntrezGene:10691
UniProt:10691

  • Internal refs:
EntrezGene:10691


Motif matrix
P0ACGT
10.1665687668562090.2646271083885540.3455691424848320.223234982270405
20.335599285977410.3144506109277750.1533355279479110.196614575146903
30.1053501779624220.2318385743064080.3480179565366480.314793291194522
40.1312735466279420.2156233546355150.2912881210532640.361814977683279
50.1255696948283120.07234054330393330.4048479226268420.397241839240913
60.04987871963642930.03911027102741040.3251666613108530.585844348025307
70.7050978928002640.0092016164010070.2847573797722870.000943111026442243
80.003534996981104370.9869830625317750.00427537729055850.00520656319656203
90.005206563196562030.00427537729055850.9869830625317750.00353499698110437
100.0009431110264422430.2847573797722870.0092016164010070.705097892800264
110.5858443480253070.3251666613108530.03911027102741040.0498787196364293
120.3972418392409130.4048479226268420.07234054330393330.125569694828312
130.206856997479340.2345549867147720.3717305568026140.186857459003274
140.4359567623453710.1451148197416330.1810325944939670.237895823419029
150.1761037866326410.2601268093669490.2307697006448020.332999703355608
160.2721015804757960.2133653851592420.3120318115535310.202501222811432
170.2374021227723890.2509817589571960.2669767653347940.244639352935621

Sub Motif Members