Personal tools

NonredundantMotifs:118

From FANTOM5_SSTAR

Revision as of 10:47, 13 May 2013 by Autoedit (talk | contribs)
Jump to: navigation, search

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :known118
  • db :SWISSREGULON
  • Id :POU6F1.p2
  • name  :
  • score :0.03323062020154045
  • External refs:
  • Internal refs:


Motif matrix
POACGT
142.5571381.724301138.7665520.892626
224.987809140.9684612.5849815.399367
3160.7976410.9142767.61483914.613861
418.0097812.6802973.733417159.517122
5152.0609418.2138055.30281818.363053
6169.2401983.7267287.365613.608081
760.8554642.8105370.939475119.335141
87.98162700175.95899
918.15379817.4849175.424454142.877448
10182.1532490.85463100.932737
111.8274095.5986657.345752169.168791

Sub Motif Members