MCL coexpression mm9:3507
From FANTOM5_SSTAR
Phase1 CAGE Peaks
| Short description | |
|---|---|
| Mm9::chr5:137463371..137463439,- | p1@Znhit1 |
| Mm9::chr5:137974440..137974518,- | p1@Epo p1@Gnb2 |
| Mm9::chr5:137974525..137974539,- | p3@Gnb2 |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
| GO ID | GO name | FDR corrected p-value |
|---|---|---|
| GO:0042744 | hydrogen peroxide catabolic process | 0.0279268370927454 |
| GO:0042743 | hydrogen peroxide metabolic process | 0.0279268370927454 |
| GO:0042542 | response to hydrogen peroxide | 0.0279268370927454 |
| GO:0000302 | response to reactive oxygen species | 0.0335011872033904 |
| GO:0006800 | oxygen and reactive oxygen species metabolic process | 0.0345159216351491 |
| GO:0004601 | peroxidase activity | 0.0345159216351491 |
| GO:0016684 | oxidoreductase activity, acting on peroxide as acceptor | 0.0345159216351491 |
| GO:0005834 | heterotrimeric G-protein complex | 0.0345159216351491 |
| GO:0006979 | response to oxidative stress | 0.0417985017757417 |
| GO:0019897 | extrinsic to plasma membrane | 0.0417985017757417 |
Relative expression of the co-expression cluster over median <br>Analyst:
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>
| Ontology term | p-value | n |
|---|---|---|
| embryonic cell | 5.58e-13 | 70 |
| neural cell | 9.30e-12 | 43 |
| ectodermal cell | 9.32e-12 | 44 |
| neurectodermal cell | 9.32e-12 | 44 |
| non-terminally differentiated cell | 2.51e-11 | 49 |
| CNS neuron (sensu Vertebrata) | 2.45e-10 | 23 |
| neuroblast (sensu Vertebrata) | 2.45e-10 | 23 |
| neuron | 7.18e-08 | 33 |
| neuronal stem cell | 7.18e-08 | 33 |
| neuroblast | 7.18e-08 | 33 |
| electrically signaling cell | 7.18e-08 | 33 |
| electrically responsive cell | 1.48e-07 | 39 |
| electrically active cell | 1.48e-07 | 39 |
| Ontology term | p-value | n |
|---|---|---|
| nervous system | 3.18e-13 | 75 |
| central nervous system | 4.21e-13 | 73 |
| gray matter | 9.37e-13 | 34 |
| regional part of nervous system | 1.33e-11 | 54 |
| regional part of forebrain | 8.18e-11 | 39 |
| forebrain | 8.18e-11 | 39 |
| future forebrain | 8.18e-11 | 39 |
| neural tube | 1.75e-10 | 52 |
| neural rod | 1.75e-10 | 52 |
| future spinal cord | 1.75e-10 | 52 |
| neural keel | 1.75e-10 | 52 |
| brain grey matter | 1.80e-10 | 29 |
| regional part of telencephalon | 1.80e-10 | 29 |
| telencephalon | 1.80e-10 | 29 |
| anterior neural tube | 3.53e-10 | 40 |
| regional part of brain | 7.92e-09 | 46 |
| brain | 9.98e-09 | 47 |
| future brain | 9.98e-09 | 47 |
| ectoderm-derived structure | 1.22e-08 | 95 |
| ectoderm | 1.22e-08 | 95 |
| presumptive ectoderm | 1.22e-08 | 95 |
| cerebral cortex | 4.19e-08 | 21 |
| cerebral hemisphere | 4.19e-08 | 21 |
| pallium | 4.19e-08 | 21 |
| neurectoderm | 4.08e-07 | 64 |
| neural plate | 4.08e-07 | 64 |
| presumptive neural plate | 4.08e-07 | 64 |
| structure with developmental contribution from neural crest | 9.33e-07 | 92 |
TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
| MA0003.1 | 0.526413 |
| MA0004.1 | 0.801718 |
| MA0006.1 | 0.60285 |
| MA0007.1 | 0.784593 |
| MA0009.1 | 1.27673 |
| MA0014.1 | 0.133574 |
| MA0017.1 | 0.635031 |
| MA0019.1 | 1.08369 |
| MA0024.1 | 1.23079 |
| MA0025.1 | 1.51835 |
| MA0027.1 | 2.9431 |
| MA0028.1 | 0.61552 |
| MA0029.1 | 1.20789 |
| MA0030.1 | 1.21482 |
| MA0031.1 | 1.17722 |
| MA0038.1 | 0.963265 |
| MA0040.1 | 1.28983 |
| MA0041.1 | 0.714279 |
| MA0042.1 | 0.69885 |
| MA0043.1 | 1.3775 |
| MA0046.1 | 1.31428 |
| MA0048.1 | 0.353763 |
| MA0050.1 | 0.845669 |
| MA0051.1 | 0.973068 |
| MA0052.1 | 1.29825 |
| MA0055.1 | 3.14815 |
| MA0056.1 | 0 |
| MA0057.1 | 0.896032 |
| MA0058.1 | 1.65098 |
| MA0059.1 | 0.705317 |
| MA0060.1 | 0.502699 |
| MA0061.1 | 0.5406 |
| MA0063.1 | 0 |
| MA0066.1 | 0.951196 |
| MA0067.1 | 1.63197 |
| MA0068.1 | 0.343188 |
| MA0069.1 | 1.29861 |
| MA0070.1 | 1.28847 |
| MA0071.1 | 0.844726 |
| MA0072.1 | 1.2796 |
| MA0073.1 | 0.439282 |
| MA0074.1 | 0.911576 |
| MA0076.1 | 0.657929 |
| MA0077.1 | 1.2569 |
| MA0078.1 | 1.0091 |
| MA0081.1 | 0.732313 |
| MA0083.1 | 1.37668 |
| MA0084.1 | 1.96428 |
| MA0087.1 | 1.33189 |
| MA0088.1 | 0.27999 |
| MA0089.1 | 0 |
| MA0090.1 | 0.762482 |
| MA0091.1 | 0.816659 |
| MA0092.1 | 0.762845 |
| MA0093.1 | 0.62555 |
| MA0095.1 | 0 |
| MA0098.1 | 0 |
| MA0100.1 | 2.07939 |
| MA0101.1 | 0.71579 |
| MA0103.1 | 0.647985 |
| MA0105.1 | 0.405648 |
| MA0106.1 | 1.01755 |
| MA0107.1 | 0.640607 |
| MA0108.2 | 1.10817 |
| MA0109.1 | 0 |
| MA0111.1 | 0.778753 |
| MA0113.1 | 0.986839 |
| MA0114.1 | 0.537669 |
| MA0115.1 | 1.38041 |
| MA0116.1 | 0.602598 |
| MA0117.1 | 1.34691 |
| MA0119.1 | 0.716476 |
| MA0122.1 | 1.36752 |
| MA0124.1 | 1.57762 |
| MA0125.1 | 1.5017 |
| MA0130.1 | 0 |
| MA0131.1 | 1.07881 |
| MA0132.1 | 0 |
| MA0133.1 | 0 |
| MA0135.1 | 1.4152 |
| MA0136.1 | 0.933582 |
| MA0139.1 | 0.462282 |
| MA0140.1 | 0.898603 |
| MA0141.1 | 0.671467 |
| MA0142.1 | 1.16183 |
| MA0143.1 | 1.00467 |
| MA0144.1 | 0.541532 |
| MA0145.1 | 1.44606 |
| MA0146.1 | 0.900029 |
| MA0147.1 | 0.556853 |
| MA0148.1 | 0.820161 |
| MA0149.1 | 0.722227 |
| MA0062.2 | 0.412742 |
| MA0035.2 | 0.903829 |
| MA0039.2 | 0.71803 |
| MA0138.2 | 1.07027 |
| MA0002.2 | 0.466067 |
| MA0137.2 | 1.60348 |
| MA0104.2 | 0.48458 |
| MA0047.2 | 0.962424 |
| MA0112.2 | 0.29236 |
| MA0065.2 | 0.292912 |
| MA0150.1 | 0.784464 |
| MA0151.1 | 0 |
| MA0152.1 | 0.962542 |
| MA0153.1 | 1.43238 |
| MA0154.1 | 0.35067 |
| MA0155.1 | 0.312898 |
| MA0156.1 | 0.656895 |
| MA0157.1 | 1.12772 |
| MA0158.1 | 0 |
| MA0159.1 | 0.569393 |
| MA0160.1 | 0.823568 |
| MA0161.1 | 0 |
| MA0162.1 | 1.53682 |
| MA0163.1 | 0.157796 |
| MA0164.1 | 0.933981 |
| MA0080.2 | 0.64167 |
| MA0018.2 | 0.944669 |
| MA0099.2 | 1.06348 |
| MA0079.2 | 0.890297 |
| MA0102.2 | 2.01714 |
| MA0258.1 | 0.520639 |
| MA0259.1 | 0.543506 |
| MA0442.1 | 0 |
