MCL coexpression mm9:646

Phase1 CAGE Peaks

	Short description
Mm9::chr11:102017653..102017728,-	p1@Tmem101
Mm9::chr4:118905501..118905561,+	p1@Lepre1
Mm9::chr5:141306409..141306421,-	p4@Gna12
Mm9::chr6:124807158..124807183,+	p@chr6:124807158..124807183 +
Mm9::chr6:124807705..124807723,-	p2@Leprel2
Mm9::chr6:124807725..124807773,-	p1@Leprel2
Mm9::chr7:52124998..52125094,-	p1@Ptov1
Mm9::chr7:52347053..52347075,-	p4@Rcn3
Mm9::chr7:52347083..52347104,-	p2@Rcn3
Mm9::chr7:52347500..52347551,-	p1@Rcn3
Mm9::chr9:114299751..114299805,-	p1@Crtap

Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

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GO ID	GO name	FDR corrected p-value
GO:0019797	procollagen-proline 3-dioxygenase activity	2.7414764005448e-05
GO:0031544	peptidyl-proline 3-dioxygenase activity	2.7414764005448e-05
GO:0031543	peptidyl-proline dioxygenase activity	6.84993630874524e-05
GO:0019798	procollagen-proline dioxygenase activity	6.84993630874524e-05
GO:0031418	L-ascorbic acid binding	0.000623232287222115
GO:0016706	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	0.000910159940640849
GO:0051213	dioxygenase activity	0.00355713241597084
GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	0.00355713241597084
GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	0.00355713241597084
GO:0019842	vitamin binding	0.00979460778428785
GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	0.0125925493366994
GO:0005783	endoplasmic reticulum	0.0192911193069523
GO:0005578	proteinaceous extracellular matrix	0.0497556147605712
GO:0042733	embryonic digit morphogenesis	0.0497556147605712
GO:0005506	iron ion binding	0.0497556147605712

Relative expression of the co-expression cluster over median <br>Analyst:

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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br><br><br>

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TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

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Novel motifs

JASPAR motifs

Motifs	-log10(p-value)
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