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MCL coexpression mm9:826

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Phase1 CAGE Peaks

 Short description
Mm9::chr15:66118158..66118223,-p1@Kcnq3
Mm9::chr1:50984355..50984387,+p1@Tmeff2
Mm9::chr3:127111962..127111982,-p6@Ank2
Mm9::chr4:109959186..109959222,-p2@Elavl4
Mm9::chr4:109959224..109959246,-p3@Elavl4
Mm9::chr4:109960084..109960139,-p1@Elavl4
Mm9::chr6:149357401..149357412,+p3@Bicd1
Mm9::chr6:149357495..149357560,+p1@Bicd1
Mm9::chr6:77929476..77929494,-p3@Ctnna2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
nervous system1.86e-3175
central nervous system1.93e-3173
ectoderm-derived structure1.75e-2895
ectoderm1.75e-2895
presumptive ectoderm1.75e-2895
neurectoderm1.15e-2664
neural plate1.15e-2664
presumptive neural plate1.15e-2664
regional part of nervous system3.86e-2354
ecto-epithelium1.13e-2273
neural tube7.29e-2252
neural rod7.29e-2252
future spinal cord7.29e-2252
neural keel7.29e-2252
structure with developmental contribution from neural crest1.46e-2192
pre-chordal neural plate1.43e-1949
brain9.65e-1947
future brain9.65e-1947
regional part of brain3.14e-1846
gray matter1.52e-1734
anterior neural tube4.43e-1740
regional part of forebrain1.81e-1639
forebrain1.81e-1639
future forebrain1.81e-1639
brain grey matter1.28e-1429
regional part of telencephalon1.28e-1429
telencephalon1.28e-1429
cerebral cortex1.09e-1021
cerebral hemisphere1.09e-1021
pallium1.09e-1021
multi-cellular organism4.18e-09333
regional part of cerebral cortex7.00e-0917
occipital lobe1.08e-0710
visual cortex1.08e-0710
neocortex1.08e-0710


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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